Wall clock time and date at job start Sat Apr 11 2020 05:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00104 * 2 1 4 4 H 1.48497 * 109.47146 * 240.00314 * 3 2 1 5 5 H 1.48498 * 109.46873 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47160 * 119.99989 * 3 2 1 7 7 C 1.38820 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99510 * 164.52033 * 7 2 1 9 9 N 1.36936 * 120.00123 * 344.52273 * 7 2 1 10 10 C 1.47003 * 121.37507 * 335.96662 * 9 7 2 11 11 C 1.50318 * 109.16607 * 222.97291 * 10 9 7 12 12 C 1.29455 * 123.65476 * 349.01875 * 11 10 9 13 13 C 1.50698 * 117.69764 * 180.86169 * 12 11 10 14 14 N 1.46494 * 109.47331 * 95.00486 * 13 12 11 15 15 C 1.34767 * 120.00200 * 180.02562 * 14 13 12 16 16 O 1.21491 * 120.00272 * 359.97438 * 15 14 13 17 17 C 1.48363 * 120.00209 * 179.97438 * 15 14 13 18 18 C 1.40163 * 119.20333 * 179.97438 * 17 15 14 19 19 C 1.36631 * 119.70656 * 179.67166 * 18 17 15 20 20 C 1.40596 * 118.20712 * 0.62984 * 19 18 17 21 21 C 1.40735 * 121.38988 * 179.67781 * 20 19 18 22 22 C 1.36581 * 118.13771 * 179.72238 * 21 20 19 23 23 C 1.39433 * 119.84885 * 0.02562 * 22 21 20 24 24 N 1.31020 * 121.83463 * 0.02562 * 23 22 21 25 25 C 1.33858 * 121.42383 * 359.96376 * 24 23 22 26 26 N 1.31886 * 119.20060 * 0.02562 * 17 15 14 27 27 C 1.49977 * 124.60495 * 1.14375 * 12 11 10 28 28 C 1.47338 * 121.37253 * 155.99144 * 9 7 2 29 29 H 0.96992 * 120.00020 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.52175 * 103.06552 * 10 9 7 31 31 H 1.09003 * 109.52409 * 342.87712 * 10 9 7 32 32 H 1.08004 * 118.17769 * 169.00194 * 11 10 9 33 33 H 1.08998 * 109.47104 * 335.00120 * 13 12 11 34 34 H 1.09005 * 109.46977 * 215.00179 * 13 12 11 35 35 H 0.97006 * 119.99890 * 359.97438 * 14 13 12 36 36 H 1.08001 * 120.15144 * 0.02562 * 18 17 15 37 37 H 1.08001 * 120.89854 * 180.27979 * 19 18 17 38 38 H 1.08008 * 120.93225 * 359.70339 * 21 20 19 39 39 H 1.07998 * 120.07702 * 180.02562 * 22 21 20 40 40 H 1.07997 * 119.08250 * 179.97438 * 23 22 21 41 41 H 1.09003 * 109.31201 * 101.01044 * 27 12 11 42 42 H 1.08999 * 109.30901 * 220.43257 * 27 12 11 43 43 H 1.09000 * 109.77596 * 237.78623 * 28 9 7 44 44 H 1.08998 * 109.77801 * 358.59724 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0609 -1.2190 -0.2502 9 7 1.3628 -2.3668 0.3154 10 6 0.1444 -2.3662 1.1378 11 6 0.2246 -3.4841 2.1395 12 6 1.1202 -4.4181 2.1021 13 6 1.0637 -5.4858 3.1641 14 7 0.3200 -6.6411 2.6560 15 6 0.1405 -7.7239 3.4379 16 8 0.5959 -7.7422 4.5641 17 6 -0.6131 -8.8938 2.9235 18 6 -0.7894 -10.0114 3.7509 19 6 -1.4875 -11.0916 3.2900 20 6 -1.9974 -11.0440 1.9807 21 6 -2.7204 -12.1216 1.4359 22 6 -3.1903 -12.0020 0.1591 23 6 -2.9467 -10.8348 -0.5636 24 7 -2.2723 -9.8341 -0.0534 25 6 -1.7835 -9.8846 1.1918 26 7 -1.1002 -8.8573 1.6984 27 6 2.2138 -4.5090 1.0797 28 6 1.8590 -3.6721 -0.1545 29 1 -0.4850 0.8400 0.0004 30 1 -0.7265 -2.5115 0.4988 31 1 0.0585 -1.4138 1.6611 32 1 -0.5055 -3.5095 2.9350 33 1 0.5634 -5.0921 4.0488 34 1 2.0766 -5.7921 3.4256 35 1 -0.0439 -6.6264 1.7569 36 1 -0.3801 -10.0163 4.7503 37 1 -1.6387 -11.9610 3.9127 38 1 -2.8983 -13.0182 2.0113 39 1 -3.7494 -12.8097 -0.2897 40 1 -3.3237 -10.7536 -1.5724 41 1 3.1441 -4.1421 1.5134 42 1 2.3436 -5.5496 0.7824 43 1 1.0847 -4.1738 -0.7349 44 1 2.7476 -3.5293 -0.7694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000710774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:19:29 Heat of formation + Delta-G solvation = 59.106351 kcal Electronic energy + Delta-G solvation = -27522.398553 eV Core-core repulsion = 23633.079393 eV Total energy + Delta-G solvation = -3889.319160 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.34253 -40.89955 -39.44839 -38.52600 -36.52335 -35.23353 -34.53742 -32.79049 -32.10495 -31.96178 -31.42845 -28.79176 -26.94125 -25.74606 -25.10223 -24.39398 -23.65395 -22.92702 -22.06089 -20.12568 -19.54549 -19.28616 -18.21356 -17.66481 -17.20241 -17.07713 -16.92753 -16.67418 -15.87836 -15.87437 -15.78647 -15.44379 -15.25811 -15.14081 -15.07116 -14.56317 -14.35894 -13.99416 -13.96728 -13.70895 -13.29924 -13.23297 -12.94241 -12.87115 -12.78984 -12.59463 -12.27754 -12.15435 -12.13920 -11.94768 -11.73090 -11.38740 -11.23903 -10.69306 -10.28577 -10.12661 -10.03188 -9.90989 -9.69640 -8.77356 -7.89004 -5.31041 -1.00939 -0.55752 0.82093 1.10912 1.25900 1.46612 1.49524 1.56166 2.09764 2.11288 2.50774 2.58501 3.04616 3.27627 3.36865 3.46086 3.58630 3.62466 3.76100 3.84309 3.93250 3.93423 4.05537 4.25448 4.39707 4.46730 4.49716 4.57255 4.66431 4.68589 4.79407 4.83065 4.87816 4.95080 5.06117 5.12836 5.17350 5.21188 5.22756 5.36227 5.44653 5.59532 5.60478 5.72078 6.10641 6.12515 6.32384 6.39922 6.90779 7.08228 7.11709 7.81172 8.36295 9.19757 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018564 B = 0.002236 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.927292 B =12517.055461 C =13519.761113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.056 4.056 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.259 4.259 8 H 0.072 0.928 9 N -0.614 5.614 10 C 0.206 3.794 11 C -0.141 4.141 12 C -0.142 4.142 13 C 0.164 3.836 14 N -0.695 5.695 15 C 0.565 3.435 16 O -0.557 6.557 17 C 0.126 3.874 18 C -0.143 4.143 19 C -0.023 4.023 20 C -0.153 4.153 21 C -0.040 4.040 22 C -0.162 4.162 23 C 0.158 3.842 24 N -0.514 5.514 25 C 0.268 3.732 26 N -0.470 5.470 27 C -0.083 4.083 28 C 0.139 3.861 29 H 0.250 0.750 30 H 0.011 0.989 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.414 0.586 36 H 0.166 0.834 37 H 0.199 0.801 38 H 0.190 0.810 39 H 0.189 0.811 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.022 0.978 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.096 -31.720 5.132 32.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.250 4.250 3 Si 0.799 3.201 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.389 4.389 8 H 0.089 0.911 9 N -0.338 5.338 10 C 0.080 3.920 11 C -0.161 4.161 12 C -0.143 4.143 13 C 0.042 3.958 14 N -0.345 5.345 15 C 0.350 3.650 16 O -0.435 6.435 17 C -0.030 4.030 18 C -0.164 4.164 19 C -0.050 4.050 20 C -0.158 4.158 21 C -0.066 4.066 22 C -0.181 4.181 23 C -0.019 4.019 24 N -0.224 5.224 25 C 0.030 3.970 26 N -0.184 5.184 27 C -0.122 4.122 28 C 0.013 3.987 29 H 0.059 0.941 30 H 0.029 0.971 31 H 0.078 0.922 32 H 0.131 0.869 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.251 0.749 36 H 0.183 0.817 37 H 0.216 0.784 38 H 0.207 0.793 39 H 0.206 0.794 40 H 0.211 0.789 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.040 0.960 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.515 -29.986 4.917 31.077 hybrid contribution -0.193 0.349 0.241 0.466 sum -6.708 -29.637 5.158 30.821 Atomic orbital electron populations 1.70176 1.06591 1.25927 1.56048 1.25796 0.96204 1.01491 1.01550 0.85273 0.77457 0.79010 0.78315 1.20012 1.22010 1.20501 1.19501 0.92596 0.85519 1.41242 0.91064 1.44401 1.29370 1.02136 1.57907 1.19398 0.87680 0.94970 0.89908 1.22986 0.97875 0.96298 0.98979 1.20618 0.98555 0.96484 0.98663 1.20412 0.96905 0.83762 0.94744 1.46045 1.54494 1.15243 1.18684 1.18190 0.79643 0.82488 0.84702 1.90754 1.51356 1.81937 1.19431 1.21324 0.96352 0.95188 0.90096 1.21984 0.99754 0.92510 1.02184 1.21983 0.91016 0.98901 0.93061 1.20057 1.01925 0.96867 0.96999 1.22043 0.91441 0.97274 0.95822 1.22550 1.00610 0.99808 0.95156 1.23862 0.89300 0.87566 1.01141 1.67625 1.11622 1.31851 1.11349 1.19507 0.96184 0.89672 0.91615 1.67215 1.09003 1.29294 1.12863 1.20714 0.96474 1.00023 0.94993 1.21158 0.97275 0.85889 0.94334 0.94076 0.97104 0.92151 0.86882 0.90987 0.90253 0.74947 0.81665 0.78379 0.79290 0.79361 0.78873 0.91207 0.90055 0.96011 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.99 11.08 21.65 0.24 -56.75 16 2 C -0.06 -3.19 5.01 84.86 0.43 -2.77 16 3 Si 0.97 45.99 29.58 68.60 2.03 48.02 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.26 -14.65 9.71 84.04 0.82 -13.83 16 8 H 0.07 3.89 7.88 -2.91 -0.02 3.87 16 9 N -0.61 -32.17 3.01 -703.04 -2.11 -34.28 16 10 C 0.21 10.45 5.23 85.42 0.45 10.90 16 11 C -0.14 -5.68 9.47 27.10 0.26 -5.42 16 12 C -0.14 -5.06 5.22 -15.14 -0.08 -5.14 16 13 C 0.16 5.02 5.66 85.63 0.48 5.51 16 14 N -0.69 -20.83 5.53 -469.23 -2.60 -23.42 16 15 C 0.56 16.89 7.81 86.94 0.68 17.57 16 16 O -0.56 -18.48 16.28 -3.69 -0.06 -18.54 16 17 C 0.13 3.31 6.75 42.30 0.29 3.60 16 18 C -0.14 -2.65 9.54 22.36 0.21 -2.44 16 19 C -0.02 -0.28 9.89 22.47 0.22 -0.06 16 20 C -0.15 -2.40 5.75 -21.20 -0.12 -2.52 16 21 C -0.04 -0.27 9.90 22.49 0.22 -0.05 16 22 C -0.16 -0.96 10.04 22.17 0.22 -0.74 16 23 C 0.16 2.07 11.14 85.10 0.95 3.02 16 24 N -0.51 -12.57 10.43 -193.76 -2.02 -14.59 16 25 C 0.27 6.74 7.61 135.12 1.03 7.77 16 26 N -0.47 -13.67 9.56 -182.97 -1.75 -15.42 16 27 C -0.08 -2.95 5.95 29.72 0.18 -2.77 16 28 C 0.14 5.97 6.59 86.32 0.57 6.54 16 29 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 3.42 6.41 -2.39 -0.02 3.41 16 32 H 0.11 4.08 7.73 -2.91 -0.02 4.06 16 33 H 0.07 2.20 7.78 -2.39 -0.02 2.18 16 34 H 0.08 2.33 8.11 -2.38 -0.02 2.31 16 35 H 0.41 12.76 7.77 -92.70 -0.72 12.04 16 36 H 0.17 2.63 7.60 -2.91 -0.02 2.61 16 37 H 0.20 0.30 8.06 -2.91 -0.02 0.27 16 38 H 0.19 -0.43 8.06 -2.91 -0.02 -0.45 16 39 H 0.19 -0.52 8.06 -2.91 -0.02 -0.55 16 40 H 0.19 1.24 8.06 -2.91 -0.02 1.22 16 41 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.06 2.55 7.96 -2.39 -0.02 2.53 16 Total: -1.00 -80.02 372.40 0.84 -79.17 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.32 Total: 16.66 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 6.80 Total: 19.16 kcal Atomic # 7 Polarization: -136.24 SS G_CDS: -8.24 Total: -144.47 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.06 Total: -18.54 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -80.02 0.84 -79.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000710774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.278 kcal (2) G-P(sol) polarization free energy of solvation -80.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds