Wall clock time and date at job start Sat Apr 11 2020 05:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99877 * 2 1 4 4 H 1.48499 * 109.47427 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47186 * 299.99982 * 3 2 1 6 6 H 1.48500 * 109.47198 * 59.99904 * 3 2 1 7 7 C 1.38808 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99987 * 190.39057 * 7 2 1 9 9 N 1.36941 * 119.99892 * 10.39411 * 7 2 1 10 10 C 1.48367 * 120.34638 * 27.80213 * 9 7 2 11 11 C 1.53882 * 107.41278 * 133.13117 * 10 9 7 12 12 H 1.09005 * 112.09765 * 181.86693 * 11 10 9 13 13 C 1.54551 * 107.83085 * 305.82803 * 11 10 9 14 14 C 1.54280 * 104.94410 * 89.62443 * 13 11 10 15 15 C 1.54796 * 104.72869 * 0.08634 * 14 13 11 16 16 H 1.09006 * 112.68935 * 146.64110 * 15 14 13 17 17 C 1.47160 * 120.70674 * 207.62254 * 9 7 2 18 18 N 1.48303 * 104.40417 * 24.62345 * 15 14 13 19 19 C 1.34775 * 128.07918 * 139.11814 * 18 15 14 20 20 O 1.21555 * 120.00044 * 175.10183 * 19 18 15 21 21 C 1.47897 * 120.00058 * 355.10823 * 19 18 15 22 22 N 1.32135 * 120.02952 * 354.86320 * 21 19 18 23 23 C 1.31983 * 122.76286 * 180.02562 * 22 21 19 24 24 C 1.37774 * 121.73412 * 359.97438 * 23 22 21 25 25 C 1.40391 * 118.72425 * 0.02562 * 24 23 22 26 26 C 1.40644 * 122.28213 * 180.02562 * 25 24 23 27 27 C 1.36644 * 117.95572 * 179.97438 * 26 25 24 28 28 C 1.39402 * 119.92094 * 359.97438 * 27 26 25 29 29 N 1.31203 * 121.85398 * 0.02562 * 28 27 26 30 30 C 1.33260 * 121.22261 * 359.66650 * 29 28 27 31 31 H 0.96997 * 120.00156 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.61140 * 13.37245 * 10 9 7 33 33 H 1.08998 * 109.49476 * 252.25692 * 10 9 7 34 34 H 1.09002 * 110.36380 * 208.52138 * 13 11 10 35 35 H 1.09000 * 110.36101 * 330.72340 * 13 11 10 36 36 H 1.08999 * 110.35965 * 118.90051 * 14 13 11 37 37 H 1.09005 * 110.36154 * 241.21654 * 14 13 11 38 38 H 1.09002 * 109.74866 * 107.63305 * 17 9 7 39 39 H 1.09004 * 109.79592 * 346.92351 * 17 9 7 40 40 H 1.08006 * 119.13222 * 179.97438 * 23 22 21 41 41 H 1.07998 * 120.64009 * 180.02562 * 24 23 22 42 42 H 1.08003 * 121.02587 * 359.97438 * 26 25 24 43 43 H 1.07988 * 120.03823 * 180.02562 * 27 26 25 44 44 H 1.08003 * 119.06948 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0770 -1.2098 0.1682 9 7 1.3424 -2.3782 -0.2150 10 6 0.0974 -2.3969 -1.0217 11 6 0.2142 -3.5603 -2.0221 12 1 -0.6526 -3.6241 -2.6799 13 6 1.5317 -3.3774 -2.8089 14 6 2.5960 -4.1294 -1.9831 15 6 1.8218 -4.7013 -0.7708 16 1 2.2159 -5.6604 -0.4347 17 6 1.8472 -3.6420 0.3451 18 7 0.4203 -4.8063 -1.2443 19 6 -0.4604 -5.8016 -1.0203 20 8 -1.6080 -5.6961 -1.4069 21 6 -0.0306 -7.0220 -0.3039 22 7 1.2385 -7.1821 0.0272 23 6 1.6809 -8.2490 0.6659 24 6 0.8381 -9.2753 1.0328 25 6 -0.5255 -9.1751 0.7143 26 6 -1.4517 -10.1778 1.0533 27 6 -2.7582 -9.9888 0.7004 28 6 -3.1355 -8.8285 0.0261 29 7 -2.2669 -7.8965 -0.2876 30 6 -0.9790 -8.0164 0.0329 31 1 -0.4850 0.8400 0.0004 32 1 -0.0242 -1.4578 -1.5615 33 1 -0.7583 -2.5591 -0.3663 34 1 1.4438 -3.8156 -3.8031 35 1 1.7859 -2.3200 -2.8824 36 1 3.0314 -4.9373 -2.5713 37 1 3.3726 -3.4414 -1.6488 38 1 1.2092 -3.9602 1.1697 39 1 2.8685 -3.5062 0.7010 40 1 2.7313 -8.3194 0.9073 41 1 1.2191 -10.1402 1.5555 42 1 -1.1399 -11.0697 1.5764 43 1 -3.4977 -10.7370 0.9444 44 1 -4.1719 -8.6931 -0.2459 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017624787.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:10 Heat of formation + Delta-G solvation = 96.621487 kcal Electronic energy + Delta-G solvation = -29796.666517 eV Core-core repulsion = 25908.974135 eV Total energy + Delta-G solvation = -3887.692382 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.43884 -39.79319 -38.17956 -37.40966 -33.95863 -33.84485 -31.86203 -31.18325 -31.01527 -30.19280 -30.03432 -26.29935 -25.45894 -24.28711 -23.78983 -23.44232 -22.51147 -20.80636 -19.97364 -19.16111 -18.29631 -17.67599 -17.23331 -16.63225 -15.87071 -15.33681 -15.23285 -15.03552 -14.70090 -14.55422 -14.37908 -13.93777 -13.68046 -13.35374 -13.27729 -12.95885 -12.82678 -12.63883 -12.51904 -12.44425 -11.91335 -11.72469 -11.35863 -11.01283 -10.95921 -10.83239 -10.54248 -10.37733 -10.23119 -9.96253 -9.88712 -9.80864 -9.57037 -9.53245 -9.44880 -8.94104 -8.62902 -8.48092 -7.99233 -6.56914 -5.71767 -3.17251 -0.20140 0.49155 1.50495 2.64077 3.27482 3.36266 3.39857 3.46790 3.48601 3.99399 4.06227 4.14865 4.24601 4.39399 4.50635 4.53785 4.57181 4.90885 5.06485 5.14637 5.28399 5.33452 5.39537 5.45623 5.53946 5.60540 5.66002 5.75390 5.83640 5.97267 6.00790 6.11153 6.31179 6.33741 6.48510 6.55457 6.60363 6.68855 6.72865 6.80714 6.95069 7.15134 7.42855 7.51091 7.70038 7.78219 7.81982 8.24567 8.45222 8.71101 9.23174 9.86018 10.44785 11.35629 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020373 B = 0.003301 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.022764 B = 8481.384839 C = 8852.196099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.001 3.999 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.176 3.824 11 C 0.104 3.896 12 H 0.086 0.914 13 C -0.112 4.112 14 C -0.111 4.111 15 C 0.091 3.909 16 H 0.132 0.868 17 C 0.142 3.858 18 N -0.585 5.585 19 C 0.574 3.426 20 O -0.510 6.510 21 C 0.162 3.838 22 N -0.438 5.438 23 C 0.076 3.924 24 C -0.132 4.132 25 C -0.082 4.082 26 C -0.067 4.067 27 C -0.155 4.155 28 C 0.127 3.873 29 N -0.416 5.416 30 C 0.104 3.896 31 H 0.253 0.747 32 H 0.096 0.904 33 H 0.024 0.976 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.013 0.987 39 H 0.060 0.940 40 H 0.166 0.834 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.888 -22.525 0.618 22.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.085 0.915 9 N -0.316 5.316 10 C 0.051 3.949 11 C 0.001 3.999 12 H 0.104 0.896 13 C -0.151 4.151 14 C -0.149 4.149 15 C -0.014 4.014 16 H 0.149 0.851 17 C 0.015 3.985 18 N -0.317 5.317 19 C 0.359 3.641 20 O -0.385 6.385 21 C 0.009 3.991 22 N -0.151 5.151 23 C -0.070 4.070 24 C -0.153 4.153 25 C -0.089 4.089 26 C -0.093 4.093 27 C -0.177 4.177 28 C -0.047 4.047 29 N -0.123 5.123 30 C -0.021 4.021 31 H 0.063 0.937 32 H 0.114 0.886 33 H 0.042 0.958 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.031 0.969 39 H 0.079 0.921 40 H 0.184 0.816 41 H 0.162 0.838 42 H 0.162 0.838 43 H 0.160 0.840 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.611 -20.954 -0.200 20.964 hybrid contribution 0.075 -0.591 0.946 1.118 sum 0.686 -21.545 0.746 21.569 Atomic orbital electron populations 1.69989 1.05165 1.25262 1.54785 1.25101 0.95396 0.98226 1.01021 0.86198 0.79138 0.84067 0.77213 1.20337 1.21665 1.21844 1.19232 0.90842 0.83808 1.43733 0.91525 1.44381 1.27288 1.02487 1.57450 1.21513 0.87893 0.94566 0.90970 1.23275 0.97592 0.84759 0.94299 0.89622 1.22327 0.94459 1.01773 0.96522 1.22335 0.98029 0.98611 0.95923 1.23731 0.80503 1.01367 0.95761 0.85121 1.21424 0.97681 0.86819 0.92626 1.49021 1.13539 1.18707 1.50442 1.17089 0.84815 0.81306 0.80923 1.90836 1.17028 1.79235 1.51368 1.21710 0.87849 0.94275 0.95225 1.67519 1.15111 1.22535 1.09908 1.22714 1.00797 0.88756 0.94721 1.22317 0.92228 1.00613 1.00143 1.18970 0.95346 0.95430 0.99158 1.21391 0.92808 0.97790 0.97331 1.22117 0.97055 0.99385 0.99098 1.23335 0.99978 0.88737 0.92683 1.68327 1.00722 1.27801 1.15460 1.19482 0.92107 0.93327 0.97214 0.93652 0.88610 0.95758 0.93330 0.89651 0.93137 0.90258 0.96876 0.92125 0.81649 0.83805 0.83850 0.84031 0.81834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.51 10.89 55.49 0.60 -25.91 16 2 C 0.00 0.02 5.09 -17.43 -0.09 -0.07 16 3 Si 0.90 21.62 29.57 -169.99 -5.03 16.60 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.25 -6.61 9.65 -15.06 -0.15 -6.75 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 N -0.59 -14.78 2.31 -170.10 -0.39 -15.17 16 10 C 0.18 4.40 4.59 -2.55 -0.01 4.39 16 11 C 0.10 2.20 4.06 -65.66 -0.27 1.94 16 12 H 0.09 1.81 7.97 -51.93 -0.41 1.39 16 13 C -0.11 -2.09 6.17 -25.25 -0.16 -2.24 16 14 C -0.11 -1.91 6.20 -25.11 -0.16 -2.06 16 15 C 0.09 1.67 3.81 -65.53 -0.25 1.42 16 16 H 0.13 2.17 4.92 -51.93 -0.26 1.92 16 17 C 0.14 3.04 6.03 -3.22 -0.02 3.02 16 18 N -0.58 -11.91 2.76 -153.95 -0.42 -12.33 16 19 C 0.57 11.94 7.90 -12.31 -0.10 11.84 16 20 O -0.51 -11.90 15.57 5.32 0.08 -11.82 16 21 C 0.16 2.84 6.78 -82.55 -0.56 2.28 16 22 N -0.44 -6.49 6.61 -9.55 -0.06 -6.55 16 23 C 0.08 0.81 11.12 -17.66 -0.20 0.61 16 24 C -0.13 -1.22 9.93 -38.94 -0.39 -1.60 16 25 C -0.08 -0.95 5.75 -106.79 -0.61 -1.56 16 26 C -0.07 -0.56 9.94 -39.25 -0.39 -0.95 16 27 C -0.16 -1.25 10.03 -39.72 -0.40 -1.65 16 28 C 0.13 1.42 11.14 -17.39 -0.19 1.23 16 29 N -0.42 -6.77 8.50 -10.75 -0.09 -6.86 16 30 C 0.10 1.64 6.61 -84.63 -0.56 1.08 16 31 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.10 2.59 6.31 -51.93 -0.33 2.26 16 33 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.70 7.83 -51.93 -0.41 1.30 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.41 7.84 -51.93 -0.41 1.01 16 38 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.06 1.22 7.97 -51.93 -0.41 0.80 16 40 H 0.17 1.17 8.06 -52.48 -0.42 0.74 16 41 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 42 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 43 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 354.20 15.07 5.34 5.34 Total: -1.00 -34.91 354.20 -10.04 -44.94 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.58 Total: 0.85 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: -4.49 Total: 10.92 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: -0.37 Total: -66.83 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.91 -10.04 -44.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017624787.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.566 kcal (2) G-P(sol) polarization free energy of solvation -34.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds