Wall clock time and date at job start Sat Apr 11 2020 05:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99877 * 2 1 4 4 H 1.48499 * 109.47427 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47186 * 299.99982 * 3 2 1 6 6 H 1.48500 * 109.47198 * 59.99904 * 3 2 1 7 7 C 1.38808 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99987 * 190.39057 * 7 2 1 9 9 N 1.36941 * 119.99892 * 10.39411 * 7 2 1 10 10 C 1.48367 * 120.34638 * 27.80213 * 9 7 2 11 11 C 1.53882 * 107.41278 * 133.13117 * 10 9 7 12 12 H 1.09005 * 112.09765 * 181.86693 * 11 10 9 13 13 C 1.54551 * 107.83085 * 305.82803 * 11 10 9 14 14 C 1.54280 * 104.94410 * 89.62443 * 13 11 10 15 15 C 1.54796 * 104.72869 * 0.08634 * 14 13 11 16 16 H 1.09006 * 112.68935 * 146.64110 * 15 14 13 17 17 C 1.47160 * 120.70674 * 207.62254 * 9 7 2 18 18 N 1.48303 * 104.40417 * 24.62345 * 15 14 13 19 19 C 1.34775 * 128.07918 * 139.11814 * 18 15 14 20 20 O 1.21555 * 120.00044 * 175.10183 * 19 18 15 21 21 C 1.47897 * 120.00058 * 355.10823 * 19 18 15 22 22 N 1.32135 * 120.02952 * 354.86320 * 21 19 18 23 23 C 1.31983 * 122.76286 * 180.02562 * 22 21 19 24 24 C 1.37774 * 121.73412 * 359.97438 * 23 22 21 25 25 C 1.40391 * 118.72425 * 0.02562 * 24 23 22 26 26 C 1.40644 * 122.28213 * 180.02562 * 25 24 23 27 27 C 1.36644 * 117.95572 * 179.97438 * 26 25 24 28 28 C 1.39402 * 119.92094 * 359.97438 * 27 26 25 29 29 N 1.31203 * 121.85398 * 0.02562 * 28 27 26 30 30 C 1.33260 * 121.22261 * 359.66650 * 29 28 27 31 31 H 0.96997 * 120.00156 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.61140 * 13.37245 * 10 9 7 33 33 H 1.08998 * 109.49476 * 252.25692 * 10 9 7 34 34 H 1.09002 * 110.36380 * 208.52138 * 13 11 10 35 35 H 1.09000 * 110.36101 * 330.72340 * 13 11 10 36 36 H 1.08999 * 110.35965 * 118.90051 * 14 13 11 37 37 H 1.09005 * 110.36154 * 241.21654 * 14 13 11 38 38 H 1.09002 * 109.74866 * 107.63305 * 17 9 7 39 39 H 1.09004 * 109.79592 * 346.92351 * 17 9 7 40 40 H 1.08006 * 119.13222 * 179.97438 * 23 22 21 41 41 H 1.07998 * 120.64009 * 180.02562 * 24 23 22 42 42 H 1.08003 * 121.02587 * 359.97438 * 26 25 24 43 43 H 1.07988 * 120.03823 * 180.02562 * 27 26 25 44 44 H 1.08003 * 119.06948 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0770 -1.2098 0.1682 9 7 1.3424 -2.3782 -0.2150 10 6 0.0974 -2.3969 -1.0217 11 6 0.2142 -3.5603 -2.0221 12 1 -0.6526 -3.6241 -2.6799 13 6 1.5317 -3.3774 -2.8089 14 6 2.5960 -4.1294 -1.9831 15 6 1.8218 -4.7013 -0.7708 16 1 2.2159 -5.6604 -0.4347 17 6 1.8472 -3.6420 0.3451 18 7 0.4203 -4.8063 -1.2443 19 6 -0.4604 -5.8016 -1.0203 20 8 -1.6080 -5.6961 -1.4069 21 6 -0.0306 -7.0220 -0.3039 22 7 1.2385 -7.1821 0.0272 23 6 1.6809 -8.2490 0.6659 24 6 0.8381 -9.2753 1.0328 25 6 -0.5255 -9.1751 0.7143 26 6 -1.4517 -10.1778 1.0533 27 6 -2.7582 -9.9888 0.7004 28 6 -3.1355 -8.8285 0.0261 29 7 -2.2669 -7.8965 -0.2876 30 6 -0.9790 -8.0164 0.0329 31 1 -0.4850 0.8400 0.0004 32 1 -0.0242 -1.4578 -1.5615 33 1 -0.7583 -2.5591 -0.3663 34 1 1.4438 -3.8156 -3.8031 35 1 1.7859 -2.3200 -2.8824 36 1 3.0314 -4.9373 -2.5713 37 1 3.3726 -3.4414 -1.6488 38 1 1.2092 -3.9602 1.1697 39 1 2.8685 -3.5062 0.7010 40 1 2.7313 -8.3194 0.9073 41 1 1.2191 -10.1402 1.5555 42 1 -1.1399 -11.0697 1.5764 43 1 -3.4977 -10.7370 0.9444 44 1 -4.1719 -8.6931 -0.2459 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017624787.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:09 Heat of formation + Delta-G solvation = 73.677349 kcal Electronic energy + Delta-G solvation = -29797.661449 eV Core-core repulsion = 25908.974135 eV Total energy + Delta-G solvation = -3888.687314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.39644 -41.30825 -39.24072 -38.86328 -35.88707 -34.75253 -33.05029 -32.82527 -32.32967 -31.89457 -31.19881 -28.13690 -26.58109 -25.30037 -25.07137 -25.00534 -24.05455 -22.28921 -21.48542 -20.30531 -19.72343 -18.80968 -18.43868 -17.89480 -17.41950 -16.83063 -16.60087 -16.37798 -16.14406 -15.69381 -15.39415 -15.31970 -15.13273 -14.87864 -14.61091 -14.26853 -14.10042 -13.99783 -13.71440 -13.69814 -13.53251 -13.14033 -13.04481 -12.83590 -12.72012 -12.23289 -12.12541 -12.04058 -11.81084 -11.75061 -11.60862 -11.26207 -11.13195 -10.65500 -10.57817 -10.37046 -10.08885 -9.78330 -9.42879 -8.62971 -7.82513 -5.33202 -1.09464 -0.32100 0.66125 1.48152 1.49069 1.60133 1.66334 1.88015 2.19081 2.51843 2.99110 3.07155 3.21345 3.32656 3.40110 3.52478 3.65107 3.73481 3.88918 3.93294 3.98390 4.13140 4.22390 4.27045 4.29979 4.46045 4.48743 4.58193 4.61921 4.65325 4.85119 4.88540 4.95992 5.02416 5.05696 5.09199 5.11190 5.16069 5.28130 5.38236 5.43901 5.57349 5.62832 5.65672 5.72612 6.35532 6.57411 6.69819 6.93997 7.10633 7.19534 7.79735 8.37235 9.23344 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020373 B = 0.003301 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.022764 B = 8481.384839 C = 8852.196099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.058 4.058 3 Si 0.973 3.027 4 H -0.258 1.258 5 H -0.293 1.293 6 H -0.298 1.298 7 C -0.249 4.249 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.194 3.806 11 C 0.105 3.895 12 H 0.075 0.925 13 C -0.103 4.103 14 C -0.102 4.102 15 C 0.103 3.897 16 H 0.157 0.843 17 C 0.140 3.860 18 N -0.593 5.593 19 C 0.566 3.434 20 O -0.555 6.555 21 C 0.105 3.895 22 N -0.445 5.445 23 C 0.055 3.945 24 C -0.088 4.088 25 C -0.103 4.103 26 C -0.048 4.048 27 C -0.153 4.153 28 C 0.125 3.875 29 N -0.492 5.492 30 C 0.081 3.919 31 H 0.247 0.753 32 H 0.069 0.931 33 H -0.030 1.030 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.078 0.922 38 H -0.014 1.014 39 H 0.080 0.920 40 H 0.207 0.793 41 H 0.201 0.799 42 H 0.196 0.804 43 H 0.187 0.813 44 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.755 -27.086 1.863 27.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.220 1.220 6 H -0.226 1.226 7 C -0.379 4.379 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.067 3.933 11 C 0.001 3.999 12 H 0.093 0.907 13 C -0.142 4.142 14 C -0.140 4.140 15 C 0.000 4.000 16 H 0.174 0.826 17 C 0.014 3.986 18 N -0.324 5.324 19 C 0.353 3.647 20 O -0.432 6.432 21 C -0.045 4.045 22 N -0.158 5.158 23 C -0.092 4.092 24 C -0.108 4.108 25 C -0.110 4.110 26 C -0.074 4.074 27 C -0.173 4.173 28 C -0.048 4.048 29 N -0.201 5.201 30 C -0.043 4.043 31 H 0.056 0.944 32 H 0.087 0.913 33 H -0.012 1.012 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.004 0.996 39 H 0.098 0.902 40 H 0.224 0.776 41 H 0.218 0.782 42 H 0.213 0.787 43 H 0.205 0.795 44 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.511 -25.539 1.044 25.801 hybrid contribution -0.922 0.572 0.716 1.300 sum 2.590 -24.968 1.759 25.163 Atomic orbital electron populations 1.70209 1.07005 1.25533 1.56709 1.25935 0.96065 1.01747 1.01436 0.85101 0.78804 0.79538 0.76378 1.18229 1.21966 1.22590 1.19652 0.91500 0.84444 1.42264 0.90215 1.44576 1.26782 1.03488 1.57809 1.21087 0.86497 0.95051 0.90629 1.23008 0.99108 0.84225 0.93570 0.90707 1.22237 0.93041 1.01273 0.97623 1.22334 0.97160 0.99294 0.95251 1.23762 0.79822 1.01332 0.95100 0.82587 1.21594 0.97694 0.86244 0.93109 1.49121 1.14399 1.18252 1.50674 1.17856 0.84197 0.82396 0.80201 1.90769 1.18786 1.80524 1.53139 1.21028 0.89769 0.94131 0.99548 1.67203 1.14003 1.24575 1.09970 1.23441 1.02938 0.88155 0.94682 1.22974 0.90592 1.00938 0.96261 1.19383 0.97384 0.94947 0.99303 1.22012 0.91971 0.97910 0.95478 1.22525 0.98404 0.98705 0.97709 1.23890 1.00149 0.89107 0.91645 1.68228 1.02052 1.30864 1.18928 1.19617 0.91884 0.94550 0.98201 0.94379 0.91308 1.01192 0.90791 0.91316 0.89787 0.90308 0.99571 0.90191 0.77618 0.78229 0.78703 0.79531 0.80389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.85 10.89 21.65 0.24 -58.61 16 2 C -0.06 -3.29 5.09 84.86 0.43 -2.86 16 3 Si 0.97 45.59 29.57 68.60 2.03 47.62 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 7 C -0.25 -13.64 9.65 84.03 0.81 -12.83 16 8 H 0.08 4.11 7.85 -2.91 -0.02 4.09 16 9 N -0.60 -31.50 2.31 -692.08 -1.60 -33.09 16 10 C 0.19 10.56 4.59 86.32 0.40 10.95 16 11 C 0.11 4.79 4.06 45.47 0.18 4.97 16 12 H 0.07 3.49 7.97 -2.38 -0.02 3.47 16 13 C -0.10 -3.89 6.17 31.56 0.19 -3.69 16 14 C -0.10 -3.39 6.20 31.64 0.20 -3.19 16 15 C 0.10 3.82 3.81 45.56 0.17 3.99 16 16 H 0.16 5.01 4.92 -2.38 -0.01 5.00 16 17 C 0.14 6.15 6.03 86.55 0.52 6.67 16 18 N -0.59 -25.56 2.76 -759.26 -2.09 -27.66 16 19 C 0.57 25.44 7.90 86.80 0.69 26.12 16 20 O -0.55 -28.59 15.57 -3.89 -0.06 -28.65 16 21 C 0.11 3.82 6.78 42.46 0.29 4.10 16 22 N -0.44 -12.74 6.61 -184.13 -1.22 -13.95 16 23 C 0.06 0.97 11.12 84.56 0.94 1.91 16 24 C -0.09 -1.15 9.93 22.68 0.23 -0.93 16 25 C -0.10 -2.05 5.75 -21.27 -0.12 -2.17 16 26 C -0.05 -0.56 9.94 22.48 0.22 -0.33 16 27 C -0.15 -1.89 10.03 22.18 0.22 -1.67 16 28 C 0.13 2.78 11.14 85.07 0.95 3.72 16 29 N -0.49 -16.88 8.50 -187.91 -1.60 -18.48 16 30 C 0.08 2.62 6.61 40.62 0.27 2.88 16 31 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.07 4.07 6.31 -2.39 -0.02 4.05 16 33 H -0.03 -1.91 8.14 -2.39 -0.02 -1.93 16 34 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.07 2.81 7.83 -2.39 -0.02 2.79 16 36 H 0.08 2.27 8.14 -2.39 -0.02 2.26 16 37 H 0.08 2.65 7.84 -2.38 -0.02 2.64 16 38 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 39 H 0.08 3.17 7.97 -2.38 -0.02 3.15 16 40 H 0.21 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.20 0.40 8.06 -2.91 -0.02 0.37 16 42 H 0.20 0.23 8.06 -2.91 -0.02 0.21 16 43 H 0.19 0.57 8.06 -2.92 -0.02 0.55 16 44 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -88.27 354.20 3.32 -84.95 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 1.03 Total: 10.22 kcal Atomic # 6 Polarization: 31.07 SS G_CDS: 6.59 Total: 37.66 kcal Atomic # 7 Polarization: -145.53 SS G_CDS: -6.27 Total: -151.80 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.06 Total: -28.65 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -88.27 3.32 -84.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017624787.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.624 kcal (2) G-P(sol) polarization free energy of solvation -88.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds