Wall clock time and date at job start Sat Apr 11 2020 05:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00164 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00026 * 3 2 1 5 5 H 1.48503 * 109.46864 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47134 * 119.99615 * 3 2 1 7 7 C 1.38813 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00493 * 190.57753 * 7 2 1 9 9 N 1.36940 * 119.99931 * 10.57189 * 7 2 1 10 10 C 1.48368 * 120.34347 * 28.34071 * 9 7 2 11 11 C 1.53895 * 107.40973 * 133.14528 * 10 9 7 12 12 H 1.08999 * 112.09567 * 181.87231 * 11 10 9 13 13 C 1.54548 * 107.82808 * 305.82768 * 11 10 9 14 14 C 1.54289 * 104.84611 * 89.68347 * 13 11 10 15 15 C 1.54539 * 104.84889 * 359.97438 * 14 13 11 16 16 H 1.09003 * 112.18180 * 147.01861 * 15 14 13 17 17 C 1.47168 * 120.71130 * 208.17685 * 9 7 2 18 18 N 1.48301 * 107.74832 * 57.94122 * 11 10 9 19 19 C 1.34776 * 128.07644 * 106.45569 * 18 11 10 20 20 O 1.21538 * 120.00133 * 4.38425 * 19 18 11 21 21 C 1.47876 * 120.00094 * 184.38293 * 19 18 11 22 22 C 1.38960 * 121.42130 * 37.19035 * 21 19 18 23 23 N 1.32573 * 120.34201 * 179.97438 * 22 21 19 24 24 N 1.28387 * 123.42912 * 0.02562 * 23 22 21 25 25 C 1.33461 * 121.85547 * 359.97438 * 24 23 22 26 26 C 1.40578 * 121.73601 * 179.97438 * 25 24 23 27 27 C 1.36115 * 119.61048 * 180.02562 * 26 25 24 28 28 C 1.39376 * 121.13057 * 0.02562 * 27 26 25 29 29 C 1.36335 * 120.88455 * 359.97438 * 28 27 26 30 30 C 1.39863 * 119.50229 * 359.76977 * 29 28 27 31 31 H 0.96992 * 120.00187 * 0.02562 * 1 2 3 32 32 H 1.08994 * 110.08762 * 13.69004 * 10 9 7 33 33 H 1.09001 * 110.02490 * 252.56261 * 10 9 7 34 34 H 1.08997 * 110.36094 * 208.52135 * 13 11 10 35 35 H 1.08999 * 110.36498 * 330.73189 * 13 11 10 36 36 H 1.08993 * 110.35773 * 118.84330 * 14 13 11 37 37 H 1.09001 * 110.35704 * 241.04422 * 14 13 11 38 38 H 1.08990 * 109.74681 * 107.61757 * 17 9 7 39 39 H 1.08996 * 109.79023 * 346.90789 * 17 9 7 40 40 H 1.08000 * 119.82724 * 359.97438 * 22 21 19 41 41 H 1.07997 * 120.19492 * 359.97438 * 26 25 24 42 42 H 1.08000 * 119.43636 * 179.97438 * 27 26 25 43 43 H 1.07992 * 119.55465 * 180.02562 * 28 27 26 44 44 H 1.08005 * 120.25143 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0765 -1.2102 0.1711 9 7 1.3430 -2.3779 -0.2186 10 6 0.1067 -2.3971 -1.0387 11 6 0.2324 -3.5641 -2.0340 12 1 -0.6273 -3.6285 -2.7010 13 6 1.5587 -3.3858 -2.8071 14 6 2.6107 -4.1388 -1.9664 15 6 1.8247 -4.7031 -0.7614 16 1 2.2236 -5.6586 -0.4209 17 6 1.8396 -3.6408 0.3510 18 7 0.4280 -4.8078 -1.2502 19 6 -0.4569 -5.8007 -1.0321 20 8 -1.5456 -5.7738 -1.5716 21 6 -0.1031 -6.9229 -0.1364 22 6 0.6491 -6.7218 1.0145 23 7 0.9536 -7.7435 1.8026 24 7 0.5884 -8.9516 1.5673 25 6 -0.1373 -9.2717 0.4940 26 6 -0.5354 -10.5955 0.2385 27 6 -1.2746 -10.8735 -0.8701 28 6 -1.6452 -9.8670 -1.7601 29 6 -1.2772 -8.5720 -1.5447 30 6 -0.5217 -8.2498 -0.4126 31 1 -0.4850 0.8400 -0.0004 32 1 0.0038 -1.4584 -1.5828 33 1 -0.7628 -2.5504 -0.3994 34 1 1.4807 -3.8270 -3.8007 35 1 1.8155 -2.3291 -2.8811 36 1 3.0499 -4.9501 -2.5468 37 1 3.3867 -3.4527 -1.6271 38 1 1.1923 -3.9552 1.1695 39 1 2.8572 -3.5054 0.7173 40 1 0.9875 -5.7281 1.2683 41 1 -0.2556 -11.3875 0.9174 42 1 -1.5786 -11.8916 -1.0638 43 1 -2.2323 -10.1161 -2.6315 44 1 -1.5703 -7.8001 -2.2409 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017996492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:22 Heat of formation + Delta-G solvation = 95.066092 kcal Electronic energy + Delta-G solvation = -29824.888121 eV Core-core repulsion = 25937.128292 eV Total energy + Delta-G solvation = -3887.759829 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.65007 -40.16062 -38.11316 -37.87737 -34.23770 -33.87242 -31.81136 -31.55949 -31.35217 -30.45462 -30.15265 -26.68883 -25.77387 -24.52603 -23.80531 -23.51983 -22.69553 -21.00626 -20.27233 -19.11510 -18.59254 -18.24122 -17.49660 -16.43232 -16.02689 -15.58265 -15.33486 -15.25702 -15.16198 -14.61992 -14.49049 -14.23947 -13.88873 -13.51907 -13.13784 -13.03429 -12.85726 -12.59461 -12.58371 -12.26109 -12.06749 -12.01518 -11.72645 -11.21375 -10.98887 -10.91744 -10.85563 -10.68074 -10.58919 -10.46278 -10.41407 -10.09314 -9.97726 -9.79902 -9.57972 -9.48177 -8.65951 -8.59905 -8.42517 -6.80951 -5.89952 -3.36940 -0.39599 0.44016 1.41485 2.52248 2.86029 2.98787 3.31142 3.37219 3.37973 3.73150 3.80819 4.14415 4.21104 4.29154 4.36461 4.55412 4.69476 4.87263 4.90491 4.92841 5.12218 5.19373 5.26918 5.29704 5.39220 5.40911 5.59357 5.62707 5.66845 5.73071 5.90083 5.94487 5.98402 6.02243 6.11221 6.18128 6.27052 6.28930 6.43892 6.46072 6.48991 6.58168 6.82185 7.15807 7.45425 7.64880 7.78620 8.18873 8.25985 8.44887 9.03678 9.65681 10.22452 11.18174 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022698 B = 0.003265 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.291515 B = 8574.113465 C = 9023.102028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.006 3.994 3 Si 0.907 3.093 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.587 5.587 10 C 0.174 3.826 11 C 0.105 3.895 12 H 0.091 0.909 13 C -0.112 4.112 14 C -0.109 4.109 15 C 0.096 3.904 16 H 0.087 0.913 17 C 0.135 3.865 18 N -0.591 5.591 19 C 0.576 3.424 20 O -0.537 6.537 21 C -0.091 4.091 22 C 0.041 3.959 23 N -0.218 5.218 24 N -0.196 5.196 25 C 0.060 3.940 26 C -0.079 4.079 27 C -0.098 4.098 28 C -0.096 4.096 29 C -0.095 4.095 30 C -0.030 4.030 31 H 0.257 0.743 32 H 0.099 0.901 33 H 0.028 0.972 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.021 0.979 39 H 0.070 0.930 40 H 0.185 0.815 41 H 0.145 0.855 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 -17.875 -5.044 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.736 3.264 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.385 4.385 8 H 0.086 0.914 9 N -0.311 5.311 10 C 0.048 3.952 11 C 0.002 3.998 12 H 0.109 0.891 13 C -0.151 4.151 14 C -0.147 4.147 15 C -0.009 4.009 16 H 0.105 0.895 17 C 0.008 3.992 18 N -0.322 5.322 19 C 0.363 3.637 20 O -0.416 6.416 21 C -0.107 4.107 22 C -0.111 4.111 23 N -0.071 5.071 24 N -0.050 5.050 25 C -0.070 4.070 26 C -0.100 4.100 27 C -0.119 4.119 28 C -0.116 4.116 29 C -0.113 4.113 30 C -0.039 4.039 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.038 0.962 39 H 0.089 0.911 40 H 0.202 0.798 41 H 0.162 0.838 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.705 -18.168 -3.969 18.610 hybrid contribution -0.363 1.429 -1.053 1.811 sum 0.342 -16.740 -5.022 17.480 Atomic orbital electron populations 1.69946 1.05243 1.25883 1.53846 1.25122 0.95410 0.98414 1.00319 0.86314 0.78784 0.83139 0.78141 1.20912 1.21622 1.20857 1.19122 0.90895 0.83543 1.44970 0.91376 1.44315 1.28003 1.02367 1.56394 1.21573 0.88142 0.94548 0.90892 1.23388 0.98031 0.83967 0.94422 0.89083 1.22335 0.93989 1.02126 0.96611 1.22284 0.98168 0.99078 0.95218 1.23251 0.80877 0.99293 0.97451 0.89540 1.21524 0.98747 0.87081 0.91843 1.49155 1.13214 1.19489 1.50353 1.17271 0.84195 0.80760 0.81453 1.90746 1.22111 1.77800 1.50923 1.21237 0.97847 0.94207 0.97391 1.24804 0.93887 1.01355 0.91056 1.73063 1.14958 0.94752 1.24277 1.73600 1.06102 1.11310 1.14033 1.20340 0.98163 0.95192 0.93270 1.20774 0.97470 0.93847 0.97946 1.21068 0.96880 1.00116 0.93828 1.21190 0.98482 0.92483 0.99420 1.21358 0.95859 0.97870 0.96239 1.18650 0.97022 0.92009 0.96201 0.93310 0.88328 0.95384 0.92927 0.89170 0.92761 0.89525 0.96180 0.91141 0.79791 0.83760 0.84563 0.84711 0.83022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.79 10.95 55.49 0.61 -24.19 16 2 C 0.01 0.16 5.07 -17.43 -0.09 0.08 16 3 Si 0.91 20.47 29.57 -169.99 -5.03 15.45 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.26 -6.33 9.64 -15.06 -0.15 -6.47 16 8 H 0.07 1.64 7.85 -52.49 -0.41 1.22 16 9 N -0.59 -13.11 2.31 -170.13 -0.39 -13.50 16 10 C 0.17 3.88 4.59 -2.55 -0.01 3.86 16 11 C 0.10 1.92 4.09 -65.66 -0.27 1.65 16 12 H 0.09 1.66 7.91 -51.93 -0.41 1.25 16 13 C -0.11 -1.80 6.18 -25.24 -0.16 -1.96 16 14 C -0.11 -1.62 6.18 -25.25 -0.16 -1.78 16 15 C 0.10 1.50 2.97 -65.68 -0.20 1.31 16 16 H 0.09 1.19 6.36 -51.93 -0.33 0.86 16 17 C 0.14 2.49 5.62 -3.25 -0.02 2.47 16 18 N -0.59 -10.21 2.75 -154.14 -0.42 -10.64 16 19 C 0.58 10.19 7.33 -12.32 -0.09 10.10 16 20 O -0.54 -10.62 15.11 5.33 0.08 -10.54 16 21 C -0.09 -1.45 5.54 -104.30 -0.58 -2.03 16 22 C 0.04 0.63 9.21 -16.96 -0.16 0.47 16 23 N -0.22 -3.45 11.47 30.73 0.35 -3.10 16 24 N -0.20 -2.96 11.52 32.21 0.37 -2.59 16 25 C 0.06 0.81 6.69 -84.87 -0.57 0.24 16 26 C -0.08 -0.79 10.01 -39.46 -0.40 -1.19 16 27 C -0.10 -0.79 9.94 -39.92 -0.40 -1.19 16 28 C -0.10 -0.89 9.96 -39.84 -0.40 -1.28 16 29 C -0.09 -1.20 9.21 -39.66 -0.37 -1.56 16 30 C -0.03 -0.43 5.77 -106.50 -0.61 -1.04 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.10 2.42 6.34 -51.93 -0.33 2.09 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.59 7.83 -51.93 -0.41 1.18 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.34 7.84 -51.93 -0.41 0.93 16 38 H 0.02 0.39 6.42 -51.93 -0.33 0.06 16 39 H 0.07 1.22 7.97 -51.93 -0.41 0.81 16 40 H 0.19 2.76 4.55 -52.49 -0.24 2.52 16 41 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 43 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.15 2.09 6.01 -52.48 -0.32 1.77 16 LS Contribution 349.00 15.07 5.26 5.26 Total: -1.00 -29.79 349.00 -9.04 -38.83 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.27 Total: 3.33 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -4.60 Total: 1.69 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.51 Total: -54.01 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.79 -9.04 -38.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017996492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.895 kcal (2) G-P(sol) polarization free energy of solvation -29.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds