Wall clock time and date at job start Sat Apr 11 2020 05:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00164 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00026 * 3 2 1 5 5 H 1.48503 * 109.46864 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47134 * 119.99615 * 3 2 1 7 7 C 1.38813 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00493 * 190.57753 * 7 2 1 9 9 N 1.36940 * 119.99931 * 10.57189 * 7 2 1 10 10 C 1.48368 * 120.34347 * 28.34071 * 9 7 2 11 11 C 1.53895 * 107.40973 * 133.14528 * 10 9 7 12 12 H 1.08999 * 112.09567 * 181.87231 * 11 10 9 13 13 C 1.54548 * 107.82808 * 305.82768 * 11 10 9 14 14 C 1.54289 * 104.84611 * 89.68347 * 13 11 10 15 15 C 1.54539 * 104.84889 * 359.97438 * 14 13 11 16 16 H 1.09003 * 112.18180 * 147.01861 * 15 14 13 17 17 C 1.47168 * 120.71130 * 208.17685 * 9 7 2 18 18 N 1.48301 * 107.74832 * 57.94122 * 11 10 9 19 19 C 1.34776 * 128.07644 * 106.45569 * 18 11 10 20 20 O 1.21538 * 120.00133 * 4.38425 * 19 18 11 21 21 C 1.47876 * 120.00094 * 184.38293 * 19 18 11 22 22 C 1.38960 * 121.42130 * 37.19035 * 21 19 18 23 23 N 1.32573 * 120.34201 * 179.97438 * 22 21 19 24 24 N 1.28387 * 123.42912 * 0.02562 * 23 22 21 25 25 C 1.33461 * 121.85547 * 359.97438 * 24 23 22 26 26 C 1.40578 * 121.73601 * 179.97438 * 25 24 23 27 27 C 1.36115 * 119.61048 * 180.02562 * 26 25 24 28 28 C 1.39376 * 121.13057 * 0.02562 * 27 26 25 29 29 C 1.36335 * 120.88455 * 359.97438 * 28 27 26 30 30 C 1.39863 * 119.50229 * 359.76977 * 29 28 27 31 31 H 0.96992 * 120.00187 * 0.02562 * 1 2 3 32 32 H 1.08994 * 110.08762 * 13.69004 * 10 9 7 33 33 H 1.09001 * 110.02490 * 252.56261 * 10 9 7 34 34 H 1.08997 * 110.36094 * 208.52135 * 13 11 10 35 35 H 1.08999 * 110.36498 * 330.73189 * 13 11 10 36 36 H 1.08993 * 110.35773 * 118.84330 * 14 13 11 37 37 H 1.09001 * 110.35704 * 241.04422 * 14 13 11 38 38 H 1.08990 * 109.74681 * 107.61757 * 17 9 7 39 39 H 1.08996 * 109.79023 * 346.90789 * 17 9 7 40 40 H 1.08000 * 119.82724 * 359.97438 * 22 21 19 41 41 H 1.07997 * 120.19492 * 359.97438 * 26 25 24 42 42 H 1.08000 * 119.43636 * 179.97438 * 27 26 25 43 43 H 1.07992 * 119.55465 * 180.02562 * 28 27 26 44 44 H 1.08005 * 120.25143 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0765 -1.2102 0.1711 9 7 1.3430 -2.3779 -0.2186 10 6 0.1067 -2.3971 -1.0387 11 6 0.2324 -3.5641 -2.0340 12 1 -0.6273 -3.6285 -2.7010 13 6 1.5587 -3.3858 -2.8071 14 6 2.6107 -4.1388 -1.9664 15 6 1.8247 -4.7031 -0.7614 16 1 2.2236 -5.6586 -0.4209 17 6 1.8396 -3.6408 0.3510 18 7 0.4280 -4.8078 -1.2502 19 6 -0.4569 -5.8007 -1.0321 20 8 -1.5456 -5.7738 -1.5716 21 6 -0.1031 -6.9229 -0.1364 22 6 0.6491 -6.7218 1.0145 23 7 0.9536 -7.7435 1.8026 24 7 0.5884 -8.9516 1.5673 25 6 -0.1373 -9.2717 0.4940 26 6 -0.5354 -10.5955 0.2385 27 6 -1.2746 -10.8735 -0.8701 28 6 -1.6452 -9.8670 -1.7601 29 6 -1.2772 -8.5720 -1.5447 30 6 -0.5217 -8.2498 -0.4126 31 1 -0.4850 0.8400 -0.0004 32 1 0.0038 -1.4584 -1.5828 33 1 -0.7628 -2.5504 -0.3994 34 1 1.4807 -3.8270 -3.8007 35 1 1.8155 -2.3291 -2.8811 36 1 3.0499 -4.9501 -2.5468 37 1 3.3867 -3.4527 -1.6271 38 1 1.1923 -3.9552 1.1695 39 1 2.8572 -3.5054 0.7173 40 1 0.9875 -5.7281 1.2683 41 1 -0.2556 -11.3875 0.9174 42 1 -1.5786 -11.8916 -1.0638 43 1 -2.2323 -10.1161 -2.6315 44 1 -1.5703 -7.8001 -2.2409 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017996492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:21 Heat of formation + Delta-G solvation = 77.645249 kcal Electronic energy + Delta-G solvation = -29825.643545 eV Core-core repulsion = 25937.128292 eV Total energy + Delta-G solvation = -3888.515253 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.75375 -41.52750 -39.45828 -38.89550 -35.97871 -35.03875 -33.11374 -32.77328 -32.73687 -32.04759 -31.20985 -28.29593 -27.05631 -25.56319 -25.33454 -24.86226 -23.97526 -22.42228 -21.60465 -20.25787 -19.75468 -19.61048 -18.74186 -17.99461 -17.34275 -16.97378 -16.57788 -16.40138 -16.32185 -16.12869 -15.76791 -15.31890 -15.27917 -15.03252 -14.68583 -14.42388 -14.20805 -13.79545 -13.58655 -13.47295 -13.45022 -13.26507 -12.93406 -12.85973 -12.67331 -12.32685 -12.21236 -12.14066 -11.98109 -11.94316 -11.80413 -11.68964 -11.57314 -11.20570 -10.74513 -10.59097 -10.49239 -9.97798 -9.50668 -8.68123 -7.85704 -5.34953 -1.44070 -0.54276 0.46630 1.38005 1.50898 1.51233 1.57725 1.61466 1.77391 2.50835 2.74344 2.77069 2.98576 3.12413 3.25361 3.32394 3.42330 3.65483 3.69343 3.75660 3.88169 4.00765 4.04823 4.13595 4.16645 4.27278 4.32214 4.44487 4.50576 4.54746 4.69700 4.76885 4.79768 4.90402 4.96521 5.00506 5.05181 5.07431 5.16716 5.21926 5.29820 5.34166 5.52548 5.56136 5.66629 5.67058 6.33639 6.39790 6.79300 7.09479 7.33997 7.77483 8.32466 9.20551 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022698 B = 0.003265 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.291515 B = 8574.113465 C = 9023.102028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.050 4.050 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.302 1.302 6 H -0.278 1.278 7 C -0.252 4.252 8 H 0.079 0.921 9 N -0.599 5.599 10 C 0.188 3.812 11 C 0.110 3.890 12 H 0.088 0.912 13 C -0.104 4.104 14 C -0.103 4.103 15 C 0.107 3.893 16 H 0.112 0.888 17 C 0.131 3.869 18 N -0.593 5.593 19 C 0.577 3.423 20 O -0.565 6.565 21 C -0.112 4.112 22 C 0.042 3.958 23 N -0.241 5.241 24 N -0.202 5.202 25 C 0.046 3.954 26 C -0.080 4.080 27 C -0.080 4.080 28 C -0.065 4.065 29 C -0.131 4.131 30 C -0.037 4.037 31 H 0.248 0.752 32 H 0.071 0.929 33 H -0.018 1.018 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.010 0.990 39 H 0.086 0.914 40 H 0.181 0.819 41 H 0.171 0.829 42 H 0.186 0.814 43 H 0.171 0.829 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.868 -21.719 -6.224 22.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.245 4.245 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.229 1.229 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.097 0.903 9 N -0.323 5.323 10 C 0.062 3.938 11 C 0.007 3.993 12 H 0.106 0.894 13 C -0.142 4.142 14 C -0.141 4.141 15 C 0.003 3.997 16 H 0.130 0.870 17 C 0.005 3.995 18 N -0.324 5.324 19 C 0.366 3.634 20 O -0.445 6.445 21 C -0.127 4.127 22 C -0.110 4.110 23 N -0.093 5.093 24 N -0.056 5.056 25 C -0.084 4.084 26 C -0.101 4.101 27 C -0.100 4.100 28 C -0.084 4.084 29 C -0.149 4.149 30 C -0.046 4.046 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.000 1.000 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.028 0.972 39 H 0.104 0.896 40 H 0.198 0.802 41 H 0.188 0.812 42 H 0.203 0.797 43 H 0.189 0.811 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.913 -22.039 -5.132 22.710 hybrid contribution -0.847 2.371 -0.699 2.613 sum 1.067 -19.668 -5.831 20.542 Atomic orbital electron populations 1.70143 1.06770 1.25775 1.56181 1.25839 0.95984 1.01460 1.01174 0.85330 0.77343 0.79240 0.78414 1.19841 1.22917 1.20388 1.19508 0.91481 0.84335 1.42838 0.90315 1.44481 1.27583 1.03242 1.56955 1.21181 0.86813 0.95080 0.90711 1.23103 0.99611 0.83076 0.93542 0.89438 1.22254 0.92656 1.01530 0.97797 1.22293 0.97405 0.99747 0.94655 1.23204 0.80258 0.99423 0.96820 0.87001 1.21703 0.99004 0.86187 0.92625 1.49174 1.13929 1.18978 1.50291 1.17592 0.83618 0.81111 0.81100 1.90715 1.23174 1.78582 1.52068 1.21043 0.99718 0.94369 0.97596 1.24654 0.94093 1.01192 0.91040 1.73021 1.16333 0.95111 1.24854 1.73483 1.06295 1.11046 1.14782 1.20767 0.98352 0.96651 0.92677 1.21216 0.97136 0.92608 0.99108 1.21614 0.94522 1.01968 0.91906 1.21709 0.95796 0.91005 0.99926 1.21321 0.98050 0.99369 0.96192 1.18877 0.97117 0.91540 0.97060 0.94276 0.91118 0.99982 0.90321 0.90976 0.89632 0.89790 0.97235 0.89601 0.80189 0.81154 0.79656 0.81145 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.43 10.95 21.65 0.24 -54.19 16 2 C -0.05 -2.63 5.07 84.86 0.43 -2.20 16 3 Si 0.97 43.06 29.57 68.60 2.03 45.09 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.25 -12.65 9.64 84.03 0.81 -11.84 16 8 H 0.08 3.74 7.85 -2.91 -0.02 3.72 16 9 N -0.60 -27.60 2.31 -692.18 -1.60 -29.19 16 10 C 0.19 8.93 4.59 86.32 0.40 9.33 16 11 C 0.11 4.18 4.09 45.47 0.19 4.36 16 12 H 0.09 3.35 7.91 -2.39 -0.02 3.33 16 13 C -0.10 -3.27 6.18 31.56 0.20 -3.08 16 14 C -0.10 -2.86 6.18 31.55 0.20 -2.66 16 15 C 0.11 3.27 2.97 45.44 0.14 3.41 16 16 H 0.11 2.93 6.36 -2.39 -0.02 2.91 16 17 C 0.13 4.87 5.62 86.53 0.49 5.36 16 18 N -0.59 -20.87 2.75 -759.85 -2.09 -22.97 16 19 C 0.58 21.06 7.33 86.80 0.64 21.69 16 20 O -0.56 -23.28 15.11 -3.83 -0.06 -23.34 16 21 C -0.11 -3.61 5.54 -19.66 -0.11 -3.72 16 22 C 0.04 1.32 9.21 84.75 0.78 2.10 16 23 N -0.24 -7.65 11.47 -56.68 -0.65 -8.30 16 24 N -0.20 -5.93 11.52 -52.00 -0.60 -6.53 16 25 C 0.05 1.16 6.69 40.38 0.27 1.43 16 26 C -0.08 -1.27 10.01 22.35 0.22 -1.05 16 27 C -0.08 -0.84 9.94 22.05 0.22 -0.62 16 28 C -0.06 -0.92 9.96 22.10 0.22 -0.70 16 29 C -0.13 -3.11 9.21 22.22 0.20 -2.90 16 30 C -0.04 -1.04 5.77 -21.08 -0.12 -1.16 16 31 H 0.25 14.14 8.31 -92.71 -0.77 13.36 16 32 H 0.07 3.73 6.34 -2.39 -0.02 3.71 16 33 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.07 2.55 7.83 -2.39 -0.02 2.53 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.08 2.42 7.84 -2.39 -0.02 2.40 16 38 H 0.01 0.39 6.42 -2.39 -0.02 0.38 16 39 H 0.09 2.91 7.97 -2.39 -0.02 2.89 16 40 H 0.18 5.60 4.55 -2.91 -0.01 5.59 16 41 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 42 H 0.19 0.28 8.06 -2.91 -0.02 0.26 16 43 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 44 H 0.13 3.68 6.01 -2.91 -0.02 3.67 16 Total: -1.00 -69.90 349.00 3.47 -66.43 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.05 Total: 15.26 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: 5.16 Total: 17.75 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -4.70 Total: -121.18 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.06 Total: -23.34 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -69.90 3.47 -66.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017996492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.072 kcal (2) G-P(sol) polarization free energy of solvation -69.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds