Wall clock time and date at job start Sat Apr 11 2020 05:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86795 * 119.99982 * 2 1 4 4 H 1.48501 * 109.47226 * 270.00267 * 3 2 1 5 5 H 1.48497 * 109.47168 * 30.00343 * 3 2 1 6 6 H 1.48506 * 109.47411 * 150.00448 * 3 2 1 7 7 C 1.38821 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99949 * 174.45683 * 7 2 1 9 9 N 1.36932 * 119.99828 * 354.45694 * 7 2 1 10 10 C 1.47163 * 120.71004 * 154.49424 * 9 7 2 11 11 C 1.53885 * 108.02526 * 132.75553 * 10 9 7 12 12 H 1.09011 * 112.09600 * 181.91758 * 11 10 9 13 13 C 1.54797 * 108.42542 * 306.23113 * 11 10 9 14 14 C 1.54273 * 104.72842 * 89.24331 * 13 11 10 15 15 C 1.54553 * 104.94676 * 0.08109 * 14 13 11 16 16 H 1.09000 * 112.18392 * 146.35085 * 15 14 13 17 17 C 1.47822 * 120.43026 * 333.42144 * 9 7 2 18 18 N 1.48300 * 107.21058 * 58.36868 * 11 10 9 19 19 C 1.34777 * 128.07904 * 106.07286 * 18 11 10 20 20 O 1.21555 * 120.00167 * 174.08952 * 19 18 11 21 21 C 1.47863 * 119.99995 * 354.07682 * 19 18 11 22 22 C 1.40617 * 119.75796 * 335.00545 * 21 19 18 23 23 C 1.35729 * 120.83651 * 179.73369 * 22 21 19 24 24 C 1.40703 * 120.08211 * 0.50295 * 23 22 21 25 25 N 1.33803 * 120.85723 * 179.70583 * 24 23 22 26 26 C 1.31327 * 119.75759 * 180.02562 * 25 24 23 27 27 C 1.39752 * 120.71560 * 359.97438 * 26 25 24 28 28 N 1.31277 * 120.67528 * 0.02562 * 27 26 25 29 29 C 1.33828 * 119.73233 * 359.97438 * 28 27 26 30 30 C 1.38411 * 119.75551 * 155.27285 * 21 19 18 31 31 H 0.97000 * 120.00679 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.74833 * 13.12530 * 10 9 7 33 33 H 1.08996 * 109.79634 * 252.41046 * 10 9 7 34 34 H 1.09000 * 110.39674 * 330.45591 * 13 11 10 35 35 H 1.08996 * 110.44594 * 208.06506 * 13 11 10 36 36 H 1.09002 * 110.36908 * 241.17935 * 14 13 11 37 37 H 1.09002 * 110.36143 * 118.97598 * 14 13 11 38 38 H 1.09000 * 108.79050 * 107.61803 * 17 9 7 39 39 H 1.09004 * 110.36154 * 347.11531 * 17 9 7 40 40 H 1.08002 * 119.57979 * 359.97438 * 22 21 19 41 41 H 1.08003 * 119.95783 * 180.29846 * 23 22 21 42 42 H 1.08004 * 119.63808 * 179.97438 * 26 25 24 43 43 H 1.08002 * 119.66468 * 180.02562 * 27 26 25 44 44 H 1.07998 * 120.25311 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4975 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0865 -1.2043 -0.0909 9 7 1.3304 -2.3853 0.1135 10 6 1.8983 -3.6331 -0.4216 11 6 1.7615 -4.7203 0.6588 12 1 2.1942 -5.6695 0.3424 13 6 2.4023 -4.1943 1.9661 14 6 1.2558 -3.4691 2.7007 15 6 0.0282 -3.6236 1.7745 16 1 -0.9023 -3.7103 2.3355 17 6 0.0215 -2.4337 0.7988 18 7 0.3186 -4.8414 0.9793 19 6 -0.5307 -5.8276 0.6292 20 8 -1.6662 -5.8342 1.0629 21 6 -0.0812 -6.9014 -0.2825 22 6 0.9738 -6.6589 -1.1800 23 6 1.4074 -7.6304 -2.0228 24 6 0.7942 -8.8967 -2.0144 25 7 1.2053 -9.8639 -2.8426 26 6 0.6171 -11.0378 -2.8169 27 6 -0.4352 -11.2897 -1.9325 28 7 -0.8567 -10.3572 -1.1101 29 6 -0.2734 -9.1528 -1.1173 30 6 -0.7058 -8.1362 -0.2501 31 1 -0.4851 0.8400 0.0004 32 1 2.9507 -3.4847 -0.6637 33 1 1.3532 -3.9327 -1.3167 34 1 3.2089 -3.4969 1.7400 35 1 2.7742 -5.0233 2.5682 36 1 1.4986 -2.4151 2.8359 37 1 1.0651 -3.9404 3.6649 38 1 -0.7606 -2.5737 0.0525 39 1 -0.1537 -1.5083 1.3476 40 1 1.4475 -5.6885 -1.1961 41 1 2.2221 -7.4301 -2.7030 42 1 0.9503 -11.8169 -3.4866 43 1 -0.9065 -12.2614 -1.9254 44 1 -1.5183 -8.3171 0.4380 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018245224.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:30 Heat of formation + Delta-G solvation = 91.422520 kcal Electronic energy + Delta-G solvation = -29451.771727 eV Core-core repulsion = 25563.853901 eV Total energy + Delta-G solvation = -3887.917826 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.63932 -40.36500 -38.20649 -36.96835 -35.01502 -34.19514 -32.01216 -31.36270 -30.75513 -30.48029 -30.20934 -26.53915 -25.78553 -24.70664 -23.74591 -23.20399 -22.54018 -21.17388 -20.25154 -19.47984 -18.49516 -17.92001 -17.29537 -16.68139 -16.03398 -15.53823 -15.32549 -15.24538 -14.85429 -14.66676 -14.52677 -14.25629 -13.87445 -13.49978 -13.31896 -13.02981 -12.81233 -12.57497 -12.24123 -12.02236 -11.99906 -11.95493 -11.91579 -11.73275 -11.41599 -11.12525 -10.93112 -10.62349 -10.52948 -10.34497 -10.05941 -9.95362 -9.74586 -9.65302 -9.37456 -9.16404 -8.79162 -8.61859 -8.30174 -6.78299 -5.84905 -3.33207 -0.11391 0.22315 1.64476 2.27283 3.14745 3.25269 3.31949 3.38176 3.39532 3.77619 3.83519 3.88823 4.01157 4.37097 4.45898 4.57440 4.68603 4.86013 4.92596 5.02207 5.14003 5.20348 5.27320 5.33054 5.43970 5.51351 5.64775 5.70715 5.73859 5.83419 5.91320 6.01101 6.07048 6.13238 6.25838 6.31325 6.34302 6.39898 6.50172 6.57557 6.64069 6.89714 6.98438 7.29104 7.44515 7.59387 7.67481 7.96241 8.30098 8.41014 9.08821 9.69799 10.24884 11.20862 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021397 B = 0.003023 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.288260 B = 9259.197945 C = 9764.704491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.003 3.997 3 Si 0.908 3.092 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.250 4.250 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.134 3.866 11 C 0.093 3.907 12 H 0.092 0.908 13 C -0.110 4.110 14 C -0.113 4.113 15 C 0.104 3.896 16 H 0.091 0.909 17 C 0.169 3.831 18 N -0.597 5.597 19 C 0.571 3.429 20 O -0.544 6.544 21 C -0.096 4.096 22 C -0.085 4.085 23 C -0.089 4.089 24 C 0.090 3.910 25 N -0.426 5.426 26 C 0.079 3.921 27 C 0.070 3.930 28 N -0.417 5.417 29 C 0.070 3.930 30 C -0.025 4.025 31 H 0.256 0.744 32 H 0.067 0.933 33 H 0.023 0.977 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.023 0.977 39 H 0.111 0.889 40 H 0.160 0.840 41 H 0.146 0.854 42 H 0.175 0.825 43 H 0.175 0.825 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.060 -18.806 -1.483 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.196 4.196 3 Si 0.738 3.262 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.312 5.312 10 C 0.006 3.994 11 C -0.011 4.011 12 H 0.110 0.890 13 C -0.149 4.149 14 C -0.152 4.152 15 C 0.001 3.999 16 H 0.109 0.891 17 C 0.043 3.957 18 N -0.328 5.328 19 C 0.359 3.641 20 O -0.423 6.423 21 C -0.101 4.101 22 C -0.104 4.104 23 C -0.108 4.108 24 C -0.033 4.033 25 N -0.140 5.140 26 C -0.097 4.097 27 C -0.106 4.106 28 N -0.131 5.131 29 C -0.053 4.053 30 C -0.045 4.045 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.041 0.959 39 H 0.129 0.871 40 H 0.177 0.823 41 H 0.164 0.836 42 H 0.192 0.808 43 H 0.192 0.808 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.302 -18.448 -1.195 18.779 hybrid contribution 0.379 0.669 -0.251 0.809 sum 3.681 -17.779 -1.446 18.213 Atomic orbital electron populations 1.69904 1.05175 1.25552 1.54687 1.25089 0.95515 0.98260 1.00688 0.86211 0.78865 0.83444 0.77706 1.21427 1.21608 1.20499 1.19192 0.90335 0.83204 1.45200 0.91325 1.44160 1.20476 1.02781 1.63806 1.21540 0.98141 0.87192 0.92504 1.23394 0.80503 0.99235 0.98015 0.88997 1.22340 0.98564 0.99245 0.94725 1.22331 0.94318 1.01998 0.96539 1.23396 0.98032 0.84891 0.93611 0.89127 1.21652 0.86533 0.94804 0.92736 1.49119 1.10191 1.21318 1.52208 1.17628 0.84731 0.80734 0.81011 1.90771 1.18994 1.76573 1.55955 1.20092 0.97222 0.94527 0.98232 1.21871 0.94349 1.01106 0.93119 1.20719 1.00465 0.90142 0.99506 1.19682 0.94904 0.94944 0.93802 1.68729 1.25881 1.00411 1.19028 1.24116 0.93219 0.95013 0.97376 1.24068 0.95056 0.99400 0.92111 1.68668 1.25194 0.99843 1.19444 1.19408 0.95391 0.93005 0.97540 1.21151 0.97637 0.89637 0.96083 0.93386 0.91477 0.95906 0.89772 0.92689 0.89386 0.92996 0.95893 0.87144 0.82291 0.83603 0.80789 0.80771 0.83100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.95 10.52 55.49 0.58 -24.36 16 2 C 0.00 0.07 5.20 -17.43 -0.09 -0.03 16 3 Si 0.91 20.57 29.56 -169.99 -5.02 15.54 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.25 -6.20 9.69 -15.06 -0.15 -6.34 16 8 H 0.07 1.65 7.82 -52.49 -0.41 1.24 16 9 N -0.59 -13.26 2.38 -170.55 -0.41 -13.67 16 10 C 0.13 2.42 5.42 -3.22 -0.02 2.41 16 11 C 0.09 1.45 2.90 -65.53 -0.19 1.26 16 12 H 0.09 1.19 5.70 -51.92 -0.30 0.90 16 13 C -0.11 -1.66 6.22 -25.12 -0.16 -1.82 16 14 C -0.11 -1.89 6.20 -25.25 -0.16 -2.05 16 15 C 0.10 1.99 4.13 -65.66 -0.27 1.71 16 16 H 0.09 1.76 7.91 -51.93 -0.41 1.35 16 17 C 0.17 3.85 4.56 -2.86 -0.01 3.84 16 18 N -0.60 -10.62 2.73 -153.97 -0.42 -11.04 16 19 C 0.57 10.47 7.69 -12.32 -0.09 10.37 16 20 O -0.54 -11.61 16.87 5.32 0.09 -11.52 16 21 C -0.10 -1.46 5.72 -105.00 -0.60 -2.06 16 22 C -0.08 -1.13 7.82 -39.58 -0.31 -1.44 16 23 C -0.09 -1.08 9.95 -39.55 -0.39 -1.47 16 24 C 0.09 1.18 6.59 -84.73 -0.56 0.62 16 25 N -0.43 -4.95 10.46 -10.74 -0.11 -5.06 16 26 C 0.08 0.65 11.21 -17.20 -0.19 0.45 16 27 C 0.07 0.59 11.21 -17.22 -0.19 0.40 16 28 N -0.42 -5.16 10.46 -10.81 -0.11 -5.27 16 29 C 0.07 0.96 6.58 -84.82 -0.56 0.40 16 30 C -0.02 -0.36 9.55 -38.69 -0.37 -0.73 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.07 1.12 7.96 -51.93 -0.41 0.71 16 33 H 0.02 0.44 6.78 -51.93 -0.35 0.08 16 34 H 0.08 1.31 7.86 -51.93 -0.41 0.90 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.09 1.61 7.84 -51.93 -0.41 1.20 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.11 2.79 5.97 -51.93 -0.31 2.48 16 40 H 0.16 2.10 3.24 -52.49 -0.17 1.93 16 41 H 0.15 1.46 8.06 -52.48 -0.42 1.04 16 42 H 0.18 0.68 8.06 -52.48 -0.42 0.26 16 43 H 0.18 0.74 8.06 -52.49 -0.42 0.31 16 44 H 0.15 2.21 7.81 -52.49 -0.41 1.80 16 LS Contribution 350.77 15.07 5.29 5.29 Total: -1.00 -31.58 350.77 -9.69 -41.27 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.26 Total: 3.31 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -4.31 Total: 5.51 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.47 Total: -59.40 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.58 -9.69 -41.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018245224.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.693 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds