Wall clock time and date at job start Sat Apr 11 2020 05:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99899 * 2 1 4 4 H 1.48502 * 109.46914 * 239.99916 * 3 2 1 5 5 H 1.48496 * 109.47345 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47042 * 120.00553 * 3 2 1 7 7 C 1.38816 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00296 * 189.09913 * 7 2 1 9 9 N 1.36935 * 119.99782 * 9.09473 * 7 2 1 10 10 C 1.48147 * 127.84036 * 15.58064 * 9 7 2 11 11 C 1.54387 * 104.61631 * 140.39105 * 10 9 7 12 12 H 1.09002 * 118.18633 * 244.20412 * 11 10 9 13 13 C 1.53004 * 118.11916 * 87.19650 * 11 10 9 14 14 H 1.08995 * 117.44415 * 16.10917 * 13 11 10 15 15 C 1.53006 * 117.40472 * 160.79346 * 13 11 10 16 16 N 1.46499 * 109.47046 * 244.22331 * 15 13 11 17 17 C 1.34777 * 120.00109 * 180.02562 * 16 15 13 18 18 O 1.21480 * 119.99783 * 359.97438 * 17 16 15 19 19 C 1.48371 * 119.99920 * 180.02562 * 17 16 15 20 20 C 1.40215 * 119.21998 * 179.72487 * 19 17 16 21 21 C 1.36645 * 119.90823 * 179.75512 * 20 19 17 22 22 C 1.40556 * 118.10749 * 0.50511 * 21 20 19 23 23 C 1.40404 * 122.06469 * 179.76748 * 22 21 20 24 24 N 1.31246 * 119.87216 * 179.97438 * 23 22 21 25 25 C 1.32601 * 122.68472 * 359.97438 * 24 23 22 26 26 C 1.36094 * 121.99516 * 0.02562 * 25 24 23 27 27 C 1.40950 * 118.76634 * 359.97438 * 26 25 24 28 28 N 1.31984 * 119.22487 * 0.02562 * 19 17 16 29 29 C 1.53005 * 60.55340 * 268.45388 * 13 11 10 30 30 H 1.09000 * 119.54049 * 248.22649 * 29 13 11 31 31 C 1.48141 * 127.83601 * 195.55850 * 9 7 2 32 32 H 0.97002 * 119.99810 * 359.97438 * 1 2 3 33 33 H 1.09001 * 110.40445 * 21.61085 * 10 9 7 34 34 H 1.08994 * 110.50953 * 259.22976 * 10 9 7 35 35 H 1.09000 * 109.46911 * 4.22291 * 15 13 11 36 36 H 1.08997 * 109.46970 * 124.22758 * 15 13 11 37 37 H 0.97005 * 119.99974 * 0.02562 * 16 15 13 38 38 H 1.07999 * 120.04326 * 0.02562 * 20 19 17 39 39 H 1.08005 * 120.94516 * 180.22848 * 21 20 19 40 40 H 1.08001 * 120.06510 * 359.95298 * 23 22 21 41 41 H 1.08009 * 119.00014 * 180.02562 * 25 24 23 42 42 H 1.08001 * 120.61953 * 179.97438 * 26 25 24 43 43 H 1.09002 * 110.41359 * 100.82669 * 31 9 7 44 44 H 1.09000 * 110.41211 * 338.38705 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0800 -1.2081 0.1474 9 7 1.3385 -2.3805 -0.1885 10 6 -0.0342 -2.5705 -0.7124 11 6 0.0640 -3.8157 -1.6198 12 1 -0.1229 -3.6915 -2.6864 13 6 -0.1181 -5.1923 -0.9773 14 1 -0.5680 -5.2281 0.0148 15 6 -0.4673 -6.3604 -1.9018 16 7 -1.7990 -6.8691 -1.5642 17 6 -2.3189 -7.9052 -2.2517 18 8 -1.6834 -8.4170 -3.1517 19 6 -3.6678 -8.4201 -1.9101 20 6 -4.1953 -9.4949 -2.6398 21 6 -5.4341 -9.9835 -2.3338 22 6 -6.1476 -9.3719 -1.2886 23 6 -7.4284 -9.8033 -0.9080 24 7 -8.0558 -9.2010 0.0749 25 6 -7.5303 -8.1831 0.7427 26 6 -6.2957 -7.6900 0.4514 27 6 -5.5573 -8.2833 -0.5923 28 7 -4.3455 -7.8516 -0.9305 29 6 1.2864 -4.5965 -1.0938 30 1 2.0099 -5.0539 -1.7685 31 6 1.8197 -3.7545 0.0854 32 1 -0.4850 0.8401 0.0004 33 1 -0.3433 -1.7010 -1.2924 34 1 -0.7332 -2.7496 0.1044 35 1 -0.4605 -6.0189 -2.9370 36 1 0.2678 -7.1553 -1.7765 37 1 -2.3066 -6.4602 -0.8458 38 1 -3.6213 -9.9389 -3.4397 39 1 -5.8550 -10.8132 -2.8825 40 1 -7.8965 -10.6290 -1.4233 41 1 -8.0994 -7.7316 1.5420 42 1 -5.8894 -6.8595 1.0096 43 1 1.4117 -4.1194 1.0280 44 1 2.9092 -3.7785 0.1072 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978784771.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:19:12 Heat of formation + Delta-G solvation = 95.562448 kcal Electronic energy + Delta-G solvation = -27121.433447 eV Core-core repulsion = 23233.695142 eV Total energy + Delta-G solvation = -3887.738305 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.73474 -39.98315 -38.85248 -38.05030 -35.16657 -34.17926 -33.35357 -32.17105 -30.94167 -30.78820 -27.81864 -27.13667 -26.00681 -24.89041 -24.34910 -23.15955 -21.35838 -21.11328 -20.08746 -19.28455 -19.06262 -18.36323 -17.71567 -16.84494 -16.46637 -16.04648 -15.78325 -15.29508 -15.00928 -14.89737 -14.77759 -14.60332 -14.14108 -13.82057 -13.64759 -13.43120 -13.31611 -12.95381 -12.74651 -12.71717 -12.66926 -11.84755 -11.26822 -11.23222 -11.12919 -10.82520 -10.76745 -10.66198 -10.31551 -10.27266 -10.17047 -9.90380 -9.80813 -9.74812 -9.46139 -9.12688 -9.02567 -8.99979 -8.64600 -6.87816 -5.80635 -3.14956 -0.44353 0.06653 1.32664 2.04208 2.78749 2.94578 3.38064 3.42710 3.43911 3.50329 3.61868 3.84135 3.98235 4.10640 4.16097 4.22653 4.37325 4.45273 4.67403 4.81701 4.86181 5.10418 5.16006 5.25923 5.28918 5.35183 5.40064 5.41741 5.48758 5.52600 5.73322 5.82703 5.86523 5.89704 5.92988 6.08726 6.22274 6.25915 6.52717 6.64999 6.70355 6.90874 7.02454 7.34538 7.39243 7.40254 7.52118 7.70692 7.94084 8.20164 9.10127 9.72960 10.50020 11.33598 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016507 B = 0.002064 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.821539 B =13559.594500 C =14873.770999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.228 4.228 8 H 0.076 0.924 9 N -0.594 5.594 10 C 0.183 3.817 11 C -0.167 4.167 12 H 0.102 0.898 13 C -0.152 4.152 14 H 0.104 0.896 15 C 0.152 3.848 16 N -0.697 5.697 17 C 0.564 3.436 18 O -0.531 6.531 19 C 0.143 3.857 20 C -0.131 4.131 21 C -0.037 4.037 22 C -0.155 4.155 23 C 0.158 3.842 24 N -0.483 5.483 25 C 0.088 3.912 26 C -0.132 4.132 27 C 0.153 3.847 28 N -0.445 5.445 29 C -0.164 4.164 30 H 0.105 0.895 31 C 0.154 3.846 32 H 0.255 0.745 33 H 0.089 0.911 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.414 0.586 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.169 0.831 41 H 0.163 0.837 42 H 0.152 0.848 43 H 0.025 0.975 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.223 -21.890 -3.071 26.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.356 4.356 8 H 0.094 0.906 9 N -0.318 5.318 10 C 0.058 3.942 11 C -0.187 4.187 12 H 0.120 0.880 13 C -0.171 4.171 14 H 0.122 0.878 15 C 0.029 3.971 16 N -0.348 5.348 17 C 0.347 3.653 18 O -0.406 6.406 19 C -0.012 4.012 20 C -0.152 4.152 21 C -0.065 4.065 22 C -0.159 4.159 23 C -0.015 4.015 24 N -0.190 5.190 25 C -0.055 4.055 26 C -0.152 4.152 27 C 0.025 3.975 28 N -0.157 5.157 29 C -0.184 4.184 30 H 0.123 0.877 31 C 0.028 3.972 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.041 0.959 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.251 0.749 38 H 0.174 0.826 39 H 0.172 0.828 40 H 0.186 0.814 41 H 0.180 0.820 42 H 0.170 0.830 43 H 0.042 0.958 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.278 -21.346 -2.783 25.831 hybrid contribution 0.664 0.678 -0.362 1.016 sum -13.614 -20.668 -3.144 24.948 Atomic orbital electron populations 1.69888 1.05062 1.25531 1.55737 1.24899 0.95652 0.97985 1.01765 0.86188 0.78549 0.82928 0.78022 1.21067 1.21545 1.20981 1.18952 0.90792 0.82383 1.43442 0.90612 1.45198 1.13314 0.99969 1.73297 1.21056 0.86818 0.92823 0.93547 1.24376 1.02211 0.92144 0.99959 0.87975 1.22521 1.00922 0.93646 0.99993 0.87788 1.20984 0.82362 0.95119 0.98590 1.45920 1.19224 1.32726 1.36917 1.17865 0.84360 0.80678 0.82376 1.90796 1.60499 1.58876 1.30474 1.21609 0.94641 0.93143 0.91837 1.21837 0.96308 0.96224 1.00787 1.21468 0.93269 0.97867 0.93913 1.19965 0.98044 0.98776 0.99120 1.23266 0.89332 0.96909 0.92041 1.67506 1.36430 1.08386 1.06707 1.22324 0.92923 0.92289 0.98006 1.21871 0.95165 1.01400 0.96790 1.18882 0.90723 0.92737 0.95187 1.67884 1.06485 1.27573 1.13729 1.23852 0.89574 1.02184 1.02822 0.87722 1.21142 0.97197 0.85967 0.92913 0.93514 0.89266 0.95890 0.90933 0.90823 0.74937 0.82595 0.82837 0.81361 0.81967 0.83019 0.95765 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 10.86 55.49 0.60 -26.13 16 2 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.88 29.56 -169.99 -5.03 16.86 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.33 10.35 -15.06 -0.16 -6.48 16 8 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 9 N -0.59 -15.17 3.38 -168.86 -0.57 -15.74 16 10 C 0.18 4.36 5.70 -2.41 -0.01 4.34 16 11 C -0.17 -3.11 6.74 -89.22 -0.60 -3.71 16 12 H 0.10 1.82 8.12 -51.93 -0.42 1.40 16 13 C -0.15 -2.31 5.39 -90.61 -0.49 -2.79 16 14 H 0.10 1.59 8.04 -51.93 -0.42 1.18 16 15 C 0.15 2.03 5.95 -4.04 -0.02 2.00 16 16 N -0.70 -8.75 5.54 -61.08 -0.34 -9.09 16 17 C 0.56 7.33 7.82 -12.09 -0.09 7.24 16 18 O -0.53 -8.08 16.28 5.38 0.09 -7.99 16 19 C 0.14 1.60 6.75 -82.89 -0.56 1.04 16 20 C -0.13 -1.13 9.54 -39.41 -0.38 -1.50 16 21 C -0.04 -0.24 9.92 -39.28 -0.39 -0.63 16 22 C -0.15 -1.25 5.75 -106.74 -0.61 -1.87 16 23 C 0.16 1.08 11.05 -16.99 -0.19 0.90 16 24 N -0.48 -4.12 10.30 -13.18 -0.14 -4.25 16 25 C 0.09 0.68 11.05 -17.99 -0.20 0.48 16 26 C -0.13 -1.13 10.08 -39.33 -0.40 -1.53 16 27 C 0.15 1.54 6.63 -84.86 -0.56 0.98 16 28 N -0.45 -5.01 9.50 -7.49 -0.07 -5.08 16 29 C -0.16 -2.85 6.85 -89.21 -0.61 -3.46 16 30 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 31 C 0.15 3.20 7.04 -2.41 -0.02 3.18 16 32 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.09 2.39 6.51 -51.93 -0.34 2.05 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 1.01 7.93 -51.93 -0.41 0.59 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.41 4.89 7.71 -40.82 -0.31 4.58 16 38 H 0.16 1.18 7.60 -52.49 -0.40 0.78 16 39 H 0.15 0.38 8.06 -52.48 -0.42 -0.04 16 40 H 0.17 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.16 0.83 8.06 -52.48 -0.42 0.40 16 42 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -33.37 373.77 -10.86 -44.22 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.65 Total: 3.64 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -5.38 Total: -2.07 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.51 Total: -60.29 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.09 Total: -7.99 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.37 -10.86 -44.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978784771.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.787 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds