Wall clock time and date at job start Sat Apr 11 2020 05:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00170 * 2 1 4 4 H 1.48492 * 109.47157 * 240.00093 * 3 2 1 5 5 H 1.48503 * 109.46921 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46909 * 119.99544 * 3 2 1 7 7 C 1.38816 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00320 * 164.47950 * 7 2 1 9 9 N 1.36943 * 119.99651 * 344.48177 * 7 2 1 10 10 C 1.47122 * 121.53573 * 336.23681 * 9 7 2 11 11 C 1.50324 * 109.10054 * 223.15756 * 10 9 7 12 12 C 1.29460 * 123.65257 * 348.53834 * 11 10 9 13 13 C 1.50698 * 117.69667 * 181.14156 * 12 11 10 14 14 N 1.46498 * 109.47312 * 94.99725 * 13 12 11 15 15 C 1.34777 * 119.99996 * 180.02562 * 14 13 12 16 16 O 1.21547 * 119.99844 * 0.02562 * 15 14 13 17 17 C 1.47869 * 119.99686 * 180.02562 * 15 14 13 18 18 C 1.40630 * 120.25972 * 359.71489 * 17 15 14 19 19 N 1.30861 * 121.65187 * 179.73873 * 18 17 15 20 20 C 1.33583 * 121.58563 * 0.55867 * 19 18 17 21 21 C 1.40644 * 121.62869 * 179.69966 * 20 19 18 22 22 N 1.31154 * 120.03786 * 179.97438 * 21 20 19 23 23 C 1.32486 * 122.89049 * 0.02562 * 22 21 20 24 24 C 1.36317 * 121.71726 * 359.97438 * 23 22 21 25 25 C 1.40607 * 118.64712 * 359.97438 * 24 23 22 26 26 C 1.38991 * 120.25443 * 180.02562 * 17 15 14 27 27 C 1.49964 * 124.60927 * 1.11640 * 12 11 10 28 28 C 1.47335 * 121.37176 * 156.00032 * 9 7 2 29 29 H 0.97003 * 119.99843 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.71972 * 103.17288 * 10 9 7 31 31 H 1.09003 * 109.38770 * 342.93829 * 10 9 7 32 32 H 1.08001 * 118.17513 * 168.81756 * 11 10 9 33 33 H 1.08996 * 109.47201 * 214.99974 * 13 12 11 34 34 H 1.09004 * 109.46722 * 334.99697 * 13 12 11 35 35 H 0.97001 * 119.99657 * 0.02562 * 14 13 12 36 36 H 1.07997 * 119.17539 * 0.02562 * 18 17 15 37 37 H 1.07997 * 119.97883 * 0.02562 * 21 20 19 38 38 H 1.08000 * 119.14073 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.68108 * 180.02562 * 24 23 22 40 40 H 1.07992 * 121.11161 * 359.97438 * 26 17 15 41 41 H 1.09005 * 109.31203 * 101.30992 * 27 12 11 42 42 H 1.08995 * 109.31683 * 220.73967 * 27 12 11 43 43 H 1.08998 * 109.78168 * 358.61973 * 28 9 7 44 44 H 1.09002 * 109.77935 * 237.81053 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0607 -1.2192 -0.2508 9 7 1.3629 -2.3666 0.3163 10 6 0.1405 -2.3693 1.1349 11 6 0.2244 -3.4836 2.1405 12 6 1.1202 -4.4174 2.1035 13 6 1.0637 -5.4848 3.1658 14 7 0.3201 -6.6403 2.6579 15 6 0.1406 -7.7230 3.4402 16 8 0.5953 -7.7405 4.5673 17 6 -0.6094 -8.8896 2.9273 18 6 -1.1429 -8.8728 1.6262 19 7 -1.8067 -9.8918 1.1430 20 6 -2.0198 -10.9945 1.8662 21 6 -2.7384 -12.0877 1.3500 22 7 -2.9288 -13.1554 2.0875 23 6 -2.4705 -13.2657 3.3256 24 6 -1.7622 -12.2638 3.9195 25 6 -1.5170 -11.0873 3.1896 26 6 -0.7981 -10.0087 3.7296 27 6 2.2100 -4.5121 1.0776 28 6 1.8589 -3.6721 -0.1533 29 1 -0.4850 0.8401 0.0004 30 1 -0.7296 -2.5199 0.4961 31 1 0.0512 -1.4155 1.6549 32 1 -0.5061 -3.5090 2.9356 33 1 2.0765 -5.7909 3.4275 34 1 0.5631 -5.0908 4.0503 35 1 -0.0430 -6.6262 1.7585 36 1 -0.9972 -7.9989 1.0087 37 1 -3.1329 -12.0483 0.3454 38 1 -2.6630 -14.1731 3.8788 39 1 -1.3960 -12.3717 4.9297 40 1 -0.4038 -10.0480 4.7342 41 1 3.1430 -4.1482 1.5082 42 1 2.3355 -5.5531 0.7800 43 1 2.7474 -3.5297 -0.7684 44 1 1.0844 -4.1739 -0.7335 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000946236.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:19:16 Heat of formation + Delta-G solvation = 73.917311 kcal Electronic energy + Delta-G solvation = -27322.434887 eV Core-core repulsion = 23433.757978 eV Total energy + Delta-G solvation = -3888.676909 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.71256 -39.97618 -38.28815 -37.75572 -35.18255 -34.16739 -33.17013 -32.07679 -30.88013 -30.85978 -29.79021 -27.39165 -25.64066 -24.98813 -24.02160 -23.04348 -22.80268 -21.50378 -21.13111 -19.14987 -18.50456 -17.89465 -17.68289 -16.83161 -15.97941 -15.79412 -15.61154 -15.48171 -15.18346 -14.89417 -14.70954 -14.44488 -13.96829 -13.75882 -13.65982 -13.63130 -13.43922 -13.21731 -12.93262 -12.89364 -12.33709 -12.13103 -11.63968 -11.45350 -11.29778 -10.96330 -10.77598 -10.65905 -10.44642 -10.37132 -10.29362 -9.88597 -9.84688 -9.82366 -9.67063 -9.17962 -8.96172 -8.73983 -8.15280 -6.81112 -5.84986 -3.23833 -0.41889 -0.00291 1.26301 2.13193 2.41489 2.93817 3.23331 3.35946 3.41799 3.42916 3.57776 3.59027 3.88126 3.96751 4.13707 4.18747 4.26879 4.45117 4.54787 4.72867 4.93458 5.03320 5.06841 5.21804 5.25617 5.33692 5.39401 5.49094 5.55446 5.71361 5.80182 5.83266 5.98688 6.01930 6.08091 6.23933 6.26361 6.43432 6.66404 6.79881 7.07535 7.15251 7.17396 7.22365 7.33975 7.43500 7.65831 7.75541 7.93496 8.32376 9.13792 9.76449 10.34277 11.25514 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028048 B = 0.001950 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.053594 B =14358.653680 C =14848.534767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.001 4.001 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.247 4.247 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.192 3.808 11 C -0.120 4.120 12 C -0.170 4.170 13 C 0.157 3.843 14 N -0.710 5.710 15 C 0.559 3.441 16 O -0.536 6.536 17 C -0.170 4.170 18 C 0.162 3.838 19 N -0.454 5.454 20 C 0.081 3.919 21 C 0.164 3.836 22 N -0.469 5.469 23 C 0.072 3.928 24 C -0.133 4.133 25 C -0.087 4.087 26 C 0.007 3.993 27 C -0.090 4.090 28 C 0.143 3.857 29 H 0.255 0.745 30 H 0.043 0.957 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.402 0.598 36 H 0.169 0.831 37 H 0.176 0.824 38 H 0.161 0.839 39 H 0.146 0.854 40 H 0.159 0.841 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.110 -23.375 6.498 24.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.736 3.264 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.067 3.933 11 C -0.141 4.141 12 C -0.171 4.171 13 C 0.035 3.965 14 N -0.361 5.361 15 C 0.344 3.656 16 O -0.414 6.414 17 C -0.176 4.176 18 C -0.013 4.013 19 N -0.162 5.162 20 C -0.042 4.042 21 C -0.009 4.009 22 N -0.178 5.178 23 C -0.070 4.070 24 C -0.154 4.154 25 C -0.094 4.094 26 C -0.020 4.020 27 C -0.129 4.129 28 C 0.016 3.984 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.238 0.762 36 H 0.186 0.814 37 H 0.193 0.807 38 H 0.178 0.822 39 H 0.163 0.837 40 H 0.176 0.824 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -4.698 -24.055 6.232 25.289 hybrid contribution 1.039 1.649 0.899 2.146 sum -3.658 -22.406 7.132 23.796 Atomic orbital electron populations 1.69989 1.05169 1.25707 1.54635 1.24992 0.95417 0.98335 1.01155 0.86314 0.78824 0.83197 0.78112 1.20901 1.21617 1.21064 1.19137 0.92240 0.84309 1.41945 0.91343 1.44151 1.28943 1.01206 1.57473 1.19804 0.88796 0.94899 0.89786 1.23329 0.95615 0.96557 0.98552 1.20477 1.00234 0.97254 0.99107 1.20541 0.96172 0.84023 0.95748 1.46148 1.55958 1.16056 1.17941 1.17960 0.79991 0.82306 0.85354 1.90791 1.50214 1.81611 1.18815 1.21184 1.03046 0.96681 0.96699 1.23242 0.89934 0.96323 0.91768 1.67913 1.13618 0.99496 1.35207 1.20086 0.98248 0.94865 0.90994 1.23193 0.92147 0.85928 0.99650 1.67475 1.18661 1.24885 1.06731 1.22327 0.94618 0.98950 0.91104 1.22007 0.99342 0.92817 1.01204 1.18959 0.99259 0.95903 0.95280 1.21933 0.90705 0.89555 0.99832 1.20761 0.96628 0.99036 0.96517 1.20961 0.97437 0.87223 0.92749 0.93503 0.93944 0.88758 0.88706 0.91170 0.91250 0.76226 0.81379 0.80709 0.82181 0.83671 0.82377 0.91684 0.92865 0.92404 0.95874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.52 11.07 55.49 0.61 -24.91 16 2 C 0.00 -0.03 5.01 -17.43 -0.09 -0.12 16 3 Si 0.91 21.28 29.58 -169.99 -5.03 16.25 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.56 9.71 -15.05 -0.15 -6.71 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -14.21 3.01 -173.58 -0.52 -14.73 16 10 C 0.19 4.32 5.25 -5.04 -0.03 4.29 16 11 C -0.12 -2.11 9.47 -35.78 -0.34 -2.45 16 12 C -0.17 -2.67 5.22 -101.00 -0.53 -3.20 16 13 C 0.16 2.12 5.66 -5.20 -0.03 2.09 16 14 N -0.71 -8.13 5.50 -62.43 -0.34 -8.47 16 15 C 0.56 6.80 7.78 -12.32 -0.10 6.70 16 16 O -0.54 -8.22 16.39 5.32 0.09 -8.13 16 17 C -0.17 -1.72 5.89 -104.77 -0.62 -2.33 16 18 C 0.16 1.51 10.68 -17.06 -0.18 1.33 16 19 N -0.45 -4.68 10.33 -10.65 -0.11 -4.79 16 20 C 0.08 0.81 6.62 -84.81 -0.56 0.25 16 21 C 0.16 1.44 11.25 -16.93 -0.19 1.25 16 22 N -0.47 -4.21 10.28 -13.11 -0.13 -4.35 16 23 C 0.07 0.51 11.08 -17.96 -0.20 0.31 16 24 C -0.13 -0.91 9.88 -39.38 -0.39 -1.30 16 25 C -0.09 -0.79 5.75 -106.79 -0.61 -1.40 16 26 C 0.01 0.06 9.51 -38.48 -0.37 -0.31 16 27 C -0.09 -1.45 5.95 -28.18 -0.17 -1.62 16 28 C 0.14 2.78 6.57 -3.53 -0.02 2.75 16 29 H 0.25 6.96 8.31 -40.82 -0.34 6.63 16 30 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.09 2.39 6.40 -51.93 -0.33 2.06 16 32 H 0.09 1.49 7.73 -52.49 -0.41 1.09 16 33 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 34 H 0.07 0.97 7.78 -51.93 -0.40 0.56 16 35 H 0.40 3.86 6.49 -40.82 -0.26 3.60 16 36 H 0.17 1.18 6.37 -52.49 -0.33 0.85 16 37 H 0.18 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.16 1.29 7.71 -52.49 -0.40 0.89 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 1.11 7.96 -51.93 -0.41 0.69 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 370.23 15.07 5.58 5.58 Total: -1.00 -31.98 370.23 -9.91 -41.89 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.49 Total: 2.13 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -4.56 Total: -0.46 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.50 Total: -57.26 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.09 Total: -8.13 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.98 -9.91 -41.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000946236.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.805 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds