Wall clock time and date at job start Sat Apr 11 2020 05:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00170 * 2 1 4 4 H 1.48492 * 109.47157 * 240.00093 * 3 2 1 5 5 H 1.48503 * 109.46921 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46909 * 119.99544 * 3 2 1 7 7 C 1.38816 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00320 * 164.47950 * 7 2 1 9 9 N 1.36943 * 119.99651 * 344.48177 * 7 2 1 10 10 C 1.47122 * 121.53573 * 336.23681 * 9 7 2 11 11 C 1.50324 * 109.10054 * 223.15756 * 10 9 7 12 12 C 1.29460 * 123.65257 * 348.53834 * 11 10 9 13 13 C 1.50698 * 117.69667 * 181.14156 * 12 11 10 14 14 N 1.46498 * 109.47312 * 94.99725 * 13 12 11 15 15 C 1.34777 * 119.99996 * 180.02562 * 14 13 12 16 16 O 1.21547 * 119.99844 * 0.02562 * 15 14 13 17 17 C 1.47869 * 119.99686 * 180.02562 * 15 14 13 18 18 C 1.40630 * 120.25972 * 359.71489 * 17 15 14 19 19 N 1.30861 * 121.65187 * 179.73873 * 18 17 15 20 20 C 1.33583 * 121.58563 * 0.55867 * 19 18 17 21 21 C 1.40644 * 121.62869 * 179.69966 * 20 19 18 22 22 N 1.31154 * 120.03786 * 179.97438 * 21 20 19 23 23 C 1.32486 * 122.89049 * 0.02562 * 22 21 20 24 24 C 1.36317 * 121.71726 * 359.97438 * 23 22 21 25 25 C 1.40607 * 118.64712 * 359.97438 * 24 23 22 26 26 C 1.38991 * 120.25443 * 180.02562 * 17 15 14 27 27 C 1.49964 * 124.60927 * 1.11640 * 12 11 10 28 28 C 1.47335 * 121.37176 * 156.00032 * 9 7 2 29 29 H 0.97003 * 119.99843 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.71972 * 103.17288 * 10 9 7 31 31 H 1.09003 * 109.38770 * 342.93829 * 10 9 7 32 32 H 1.08001 * 118.17513 * 168.81756 * 11 10 9 33 33 H 1.08996 * 109.47201 * 214.99974 * 13 12 11 34 34 H 1.09004 * 109.46722 * 334.99697 * 13 12 11 35 35 H 0.97001 * 119.99657 * 0.02562 * 14 13 12 36 36 H 1.07997 * 119.17539 * 0.02562 * 18 17 15 37 37 H 1.07997 * 119.97883 * 0.02562 * 21 20 19 38 38 H 1.08000 * 119.14073 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.68108 * 180.02562 * 24 23 22 40 40 H 1.07992 * 121.11161 * 359.97438 * 26 17 15 41 41 H 1.09005 * 109.31203 * 101.30992 * 27 12 11 42 42 H 1.08995 * 109.31683 * 220.73967 * 27 12 11 43 43 H 1.08998 * 109.78168 * 358.61973 * 28 9 7 44 44 H 1.09002 * 109.77935 * 237.81053 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0607 -1.2192 -0.2508 9 7 1.3629 -2.3666 0.3163 10 6 0.1405 -2.3693 1.1349 11 6 0.2244 -3.4836 2.1405 12 6 1.1202 -4.4174 2.1035 13 6 1.0637 -5.4848 3.1658 14 7 0.3201 -6.6403 2.6579 15 6 0.1406 -7.7230 3.4402 16 8 0.5953 -7.7405 4.5673 17 6 -0.6094 -8.8896 2.9273 18 6 -1.1429 -8.8728 1.6262 19 7 -1.8067 -9.8918 1.1430 20 6 -2.0198 -10.9945 1.8662 21 6 -2.7384 -12.0877 1.3500 22 7 -2.9288 -13.1554 2.0875 23 6 -2.4705 -13.2657 3.3256 24 6 -1.7622 -12.2638 3.9195 25 6 -1.5170 -11.0873 3.1896 26 6 -0.7981 -10.0087 3.7296 27 6 2.2100 -4.5121 1.0776 28 6 1.8589 -3.6721 -0.1533 29 1 -0.4850 0.8401 0.0004 30 1 -0.7296 -2.5199 0.4961 31 1 0.0512 -1.4155 1.6549 32 1 -0.5061 -3.5090 2.9356 33 1 2.0765 -5.7909 3.4275 34 1 0.5631 -5.0908 4.0503 35 1 -0.0430 -6.6262 1.7585 36 1 -0.9972 -7.9989 1.0087 37 1 -3.1329 -12.0483 0.3454 38 1 -2.6630 -14.1731 3.8788 39 1 -1.3960 -12.3717 4.9297 40 1 -0.4038 -10.0480 4.7342 41 1 3.1430 -4.1482 1.5082 42 1 2.3355 -5.5531 0.7800 43 1 2.7474 -3.5297 -0.7684 44 1 1.0844 -4.1739 -0.7335 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000946236.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:19:15 Heat of formation + Delta-G solvation = 53.533529 kcal Electronic energy + Delta-G solvation = -27323.318794 eV Core-core repulsion = 23433.757978 eV Total energy + Delta-G solvation = -3889.560816 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.38502 -40.90624 -39.41231 -38.80776 -36.50707 -34.85385 -34.64898 -33.11553 -32.29823 -31.47943 -31.39335 -28.76650 -26.78958 -25.66490 -25.37871 -24.33917 -23.68386 -22.88098 -22.25538 -19.98576 -19.45236 -19.18848 -18.59570 -17.70640 -17.21882 -17.01018 -16.85742 -16.49747 -16.13044 -15.81718 -15.80276 -15.40305 -15.24353 -15.21717 -14.97988 -14.50779 -14.33934 -14.29068 -13.94010 -13.79485 -13.56152 -13.47801 -13.26186 -12.90906 -12.76730 -12.57793 -12.25542 -12.11268 -11.96869 -11.69273 -11.55239 -11.23126 -10.99644 -10.67343 -10.57308 -10.54021 -10.15774 -9.65095 -9.56704 -8.73872 -7.87618 -5.28217 -1.08769 -0.65990 0.61208 1.15177 1.38558 1.47803 1.50172 1.56384 2.15174 2.20400 2.51993 2.92626 2.93909 3.26132 3.29527 3.37413 3.46643 3.55876 3.58835 3.63703 3.83341 3.90877 3.98623 4.16524 4.34864 4.45583 4.47896 4.55664 4.62245 4.67638 4.75991 4.80252 4.85722 4.92762 4.94421 5.11829 5.16342 5.23153 5.27082 5.41896 5.45705 5.50690 5.62424 5.78003 6.17736 6.34905 6.37965 6.50022 6.83066 7.01069 7.14607 7.84958 8.38366 9.20648 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028048 B = 0.001950 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.053594 B =14358.653680 C =14848.534767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.055 4.055 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.281 1.281 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.615 5.615 10 C 0.202 3.798 11 C -0.139 4.139 12 C -0.141 4.141 13 C 0.167 3.833 14 N -0.702 5.702 15 C 0.566 3.434 16 O -0.569 6.569 17 C -0.180 4.180 18 C 0.162 3.838 19 N -0.471 5.471 20 C 0.065 3.935 21 C 0.152 3.848 22 N -0.483 5.483 23 C 0.067 3.933 24 C -0.125 4.125 25 C -0.100 4.100 26 C 0.013 3.987 27 C -0.085 4.085 28 C 0.137 3.863 29 H 0.249 0.751 30 H 0.016 0.984 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.413 0.587 36 H 0.187 0.813 37 H 0.187 0.813 38 H 0.191 0.809 39 H 0.176 0.824 40 H 0.169 0.831 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.058 0.942 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.315 -25.639 7.440 26.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.250 4.250 3 Si 0.795 3.205 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.207 1.207 7 C -0.386 4.386 8 H 0.088 0.912 9 N -0.339 5.339 10 C 0.077 3.923 11 C -0.159 4.159 12 C -0.141 4.141 13 C 0.045 3.955 14 N -0.354 5.354 15 C 0.352 3.648 16 O -0.450 6.450 17 C -0.187 4.187 18 C -0.012 4.012 19 N -0.179 5.179 20 C -0.058 4.058 21 C -0.020 4.020 22 N -0.192 5.192 23 C -0.076 4.076 24 C -0.145 4.145 25 C -0.107 4.107 26 C -0.014 4.014 27 C -0.123 4.123 28 C 0.011 3.989 29 H 0.058 0.942 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.132 0.868 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.250 0.750 36 H 0.204 0.796 37 H 0.204 0.796 38 H 0.207 0.793 39 H 0.194 0.806 40 H 0.186 0.814 41 H 0.082 0.918 42 H 0.108 0.892 43 H 0.076 0.924 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.898 -26.354 7.145 27.583 hybrid contribution 0.806 2.188 0.599 2.408 sum -3.092 -24.166 7.744 25.564 Atomic orbital electron populations 1.70151 1.06423 1.25809 1.56172 1.25722 0.96174 1.01279 1.01794 0.85348 0.77514 0.79415 0.78227 1.20133 1.22159 1.20685 1.19468 0.92548 0.85628 1.40924 0.91214 1.44436 1.29164 1.02134 1.58176 1.19449 0.87666 0.95103 0.90050 1.22973 0.98083 0.96040 0.98823 1.20586 0.98353 0.96622 0.98576 1.20313 0.96810 0.83787 0.94624 1.45950 1.55639 1.15353 1.18434 1.18122 0.79366 0.82540 0.84726 1.90778 1.51717 1.82261 1.20218 1.21009 1.04026 0.96316 0.97337 1.23491 0.89385 0.96681 0.91676 1.67923 1.14306 0.99974 1.35717 1.20321 0.98720 0.95086 0.91627 1.23393 0.92452 0.85836 1.00341 1.67511 1.18983 1.24963 1.07730 1.22864 0.93991 1.00100 0.90620 1.22349 0.98332 0.91596 1.02252 1.19155 0.99483 0.96724 0.95303 1.22115 0.89903 0.89245 1.00093 1.20701 0.96348 1.00386 0.94892 1.21163 0.97424 0.85813 0.94451 0.94155 0.96643 0.92540 0.86782 0.90637 0.91381 0.74977 0.79584 0.79632 0.79257 0.80646 0.81361 0.91840 0.89164 0.92391 0.95246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.51 11.07 21.65 0.24 -54.27 16 2 C -0.05 -3.02 5.01 84.86 0.43 -2.59 16 3 Si 0.97 44.45 29.58 68.60 2.03 46.47 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 7 C -0.26 -13.75 9.71 84.03 0.82 -12.94 16 8 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 9 N -0.62 -29.72 3.01 -703.08 -2.12 -31.84 16 10 C 0.20 9.38 5.25 85.40 0.45 9.83 16 11 C -0.14 -4.82 9.47 27.10 0.26 -4.57 16 12 C -0.14 -4.13 5.22 -15.15 -0.08 -4.21 16 13 C 0.17 4.07 5.66 85.63 0.48 4.56 16 14 N -0.70 -14.33 5.50 -469.69 -2.58 -16.91 16 15 C 0.57 12.64 7.78 86.79 0.68 13.31 16 16 O -0.57 -16.45 16.39 -3.86 -0.06 -16.51 16 17 C -0.18 -3.34 5.89 -19.96 -0.12 -3.46 16 18 C 0.16 2.77 10.68 85.42 0.91 3.69 16 19 N -0.47 -9.22 10.33 -187.60 -1.94 -11.15 16 20 C 0.07 1.22 6.62 40.36 0.27 1.49 16 21 C 0.15 2.54 11.25 85.38 0.96 3.50 16 22 N -0.48 -7.93 10.28 -195.39 -2.01 -9.94 16 23 C 0.07 0.78 11.08 84.15 0.93 1.71 16 24 C -0.13 -1.38 9.88 22.40 0.22 -1.16 16 25 C -0.10 -1.62 5.75 -21.27 -0.12 -1.74 16 26 C 0.01 0.22 9.51 22.98 0.22 0.44 16 27 C -0.08 -2.51 5.95 29.65 0.18 -2.33 16 28 C 0.14 5.17 6.57 86.26 0.57 5.74 16 29 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 30 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 3.01 6.40 -2.39 -0.02 2.99 16 32 H 0.11 3.50 7.73 -2.91 -0.02 3.48 16 33 H 0.08 1.84 8.11 -2.39 -0.02 1.82 16 34 H 0.07 1.74 7.78 -2.38 -0.02 1.72 16 35 H 0.41 6.80 6.49 -92.71 -0.60 6.20 16 36 H 0.19 2.25 6.37 -2.91 -0.02 2.23 16 37 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.19 0.94 8.06 -2.91 -0.02 0.92 16 39 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 40 H 0.17 2.39 7.71 -2.91 -0.02 2.37 16 41 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 42 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.06 2.16 7.96 -2.39 -0.02 2.14 16 44 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -70.53 370.23 1.04 -69.49 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.44 Total: 13.40 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 7.04 Total: 11.27 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -8.41 Total: -124.12 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.06 Total: -16.51 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -70.53 1.04 -69.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000946236.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.024 kcal (2) G-P(sol) polarization free energy of solvation -70.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds