Wall clock time and date at job start Sat Apr 11 2020 05:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99940 * 2 1 4 4 H 1.48498 * 109.47028 * 269.99627 * 3 2 1 5 5 H 1.48491 * 109.47291 * 29.99954 * 3 2 1 6 6 H 1.48504 * 109.46955 * 150.00079 * 3 2 1 7 7 C 1.38818 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99610 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00160 * 359.97438 * 7 2 1 10 10 C 1.47866 * 126.94264 * 359.97438 * 9 7 2 11 11 C 1.55486 * 105.16744 * 181.92229 * 10 9 7 12 12 H 1.09001 * 116.03481 * 159.75572 * 11 10 9 13 13 C 1.57435 * 99.68379 * 32.86045 * 11 10 9 14 14 C 1.49283 * 126.94095 * 180.02562 * 9 7 2 15 15 H 1.09002 * 116.15783 * 15.83989 * 14 9 7 16 16 C 1.56021 * 104.09087 * 246.69593 * 14 9 7 17 17 N 1.47866 * 105.10440 * 288.76948 * 16 14 9 18 18 C 1.34781 * 126.94102 * 181.97683 * 17 16 14 19 19 O 1.21582 * 119.99675 * 184.68154 * 18 17 16 20 20 C 1.47637 * 120.00411 * 4.68592 * 18 17 16 21 21 C 1.40247 * 120.49564 * 352.18289 * 20 18 17 22 22 C 1.38001 * 118.36112 * 180.27358 * 21 20 18 23 23 C 1.39179 * 119.25503 * 359.97438 * 22 21 20 24 24 N 1.39413 * 119.52950 * 179.97438 * 23 22 21 25 25 C 1.36714 * 125.68931 * 359.71487 * 24 23 22 26 26 C 1.34766 * 108.18716 * 179.86519 * 25 24 23 27 27 C 1.41017 * 107.50214 * 0.38662 * 26 25 24 28 28 C 1.34770 * 107.50026 * 359.75952 * 27 26 25 29 29 N 1.32445 * 120.93925 * 359.97438 * 23 22 21 30 30 C 1.31629 * 121.80219 * 359.97438 * 29 23 22 31 31 H 0.96999 * 119.99990 * 0.02562 * 1 2 3 32 32 H 1.08998 * 110.31635 * 300.90800 * 10 9 7 33 33 H 1.09006 * 110.31205 * 62.99775 * 10 9 7 34 34 H 1.09004 * 112.52964 * 191.70404 * 13 11 10 35 35 H 1.09004 * 112.31600 * 64.17507 * 13 11 10 36 36 H 1.09001 * 110.31448 * 169.86085 * 16 14 9 37 37 H 1.09004 * 110.31303 * 47.67546 * 16 14 9 38 38 H 1.08004 * 120.81942 * 0.24757 * 21 20 18 39 39 H 1.07999 * 120.37037 * 180.02562 * 22 21 20 40 40 H 1.08003 * 125.90744 * 0.02562 * 25 24 23 41 41 H 1.08002 * 126.24917 * 180.16935 * 26 25 24 42 42 H 1.07998 * 126.25224 * 179.73109 * 27 26 25 43 43 H 1.08000 * 125.90688 * 179.97438 * 28 27 26 44 44 H 1.07998 * 119.68523 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1423 -2.5668 0.0005 11 6 -0.3648 -4.1049 0.0503 12 1 -1.3439 -4.4357 0.3971 13 6 0.8847 -4.5255 0.9108 14 6 1.9102 -3.7617 -0.0005 15 1 2.9644 -3.8352 0.2665 16 6 1.5081 -4.3457 -1.3903 17 7 0.0514 -4.5835 -1.3015 18 6 -0.7413 -5.1188 -2.2511 19 8 -1.9430 -5.1796 -2.0764 20 6 -0.1505 -5.6315 -3.5032 21 6 1.2065 -5.4214 -3.7881 22 6 1.7115 -5.9147 -4.9739 23 6 0.8650 -6.5994 -5.8411 24 7 1.3689 -7.0997 -7.0408 25 6 2.6594 -6.9792 -7.4758 26 6 2.7589 -7.5915 -8.6722 27 6 1.4845 -8.1020 -8.9947 28 6 0.6537 -7.7877 -7.9811 29 7 -0.4124 -6.7823 -5.5427 30 6 -0.9348 -6.3296 -4.4225 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5808 -2.0918 0.8781 33 1 -0.5747 -2.1514 -0.9098 34 1 1.0497 -5.6030 0.9086 35 1 0.8465 -4.1199 1.9218 36 1 2.0341 -5.2826 -1.5736 37 1 1.7268 -3.6272 -2.1803 38 1 1.8407 -4.8864 -3.0967 39 1 2.7519 -5.7719 -5.2258 40 1 3.4612 -6.4817 -6.9503 41 1 3.6508 -7.6730 -9.2757 42 1 1.2220 -8.6451 -9.8904 43 1 -0.3957 -8.0359 -7.9221 44 1 -1.9808 -6.4986 -4.2136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032688717.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:19:57 Heat of formation + Delta-G solvation = 148.574291 kcal Electronic energy + Delta-G solvation = -28646.901343 eV Core-core repulsion = 24761.461804 eV Total energy + Delta-G solvation = -3885.439539 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.96410 -40.68553 -39.56264 -37.78506 -34.19746 -33.45805 -32.95476 -31.50713 -29.85883 -29.19239 -29.03371 -28.64302 -25.61210 -24.79127 -24.02437 -23.35498 -21.27163 -20.71082 -20.29208 -19.95768 -19.20779 -18.62565 -17.62739 -16.65625 -16.39065 -15.87077 -15.69888 -15.35637 -15.19093 -14.74437 -14.28845 -14.02428 -13.89290 -13.67400 -13.62691 -13.50952 -13.10294 -12.75335 -12.59114 -12.27981 -12.13679 -12.01389 -11.81972 -11.42822 -11.14353 -10.96823 -10.81446 -10.71541 -10.39167 -10.26739 -10.18823 -10.10155 -10.08767 -9.74365 -9.60191 -8.79456 -8.51243 -8.50214 -8.16495 -7.03686 -5.86056 -3.21559 0.24026 0.92256 2.01399 2.33198 2.75284 3.01461 3.14869 3.31206 3.35982 3.39043 3.72957 4.02266 4.32935 4.35677 4.49765 4.64699 4.66595 4.87304 4.95182 4.99183 5.12394 5.20514 5.23178 5.27801 5.39859 5.43074 5.44935 5.62205 5.64131 5.69550 5.76668 5.90303 5.96430 5.98104 6.07928 6.19581 6.27342 6.32653 6.45304 6.52662 6.61344 6.76015 7.08840 7.31955 7.37258 7.55953 7.62690 7.86666 8.00037 8.35282 9.00170 9.61335 10.28862 11.25822 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014835 B = 0.002838 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.975563 B = 9864.660345 C =10842.532867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.236 4.236 8 H 0.082 0.918 9 N -0.596 5.596 10 C 0.171 3.829 11 C 0.101 3.899 12 H 0.117 0.883 13 C -0.150 4.150 14 C 0.140 3.860 15 H 0.110 0.890 16 C 0.069 3.931 17 N -0.598 5.598 18 C 0.577 3.423 19 O -0.546 6.546 20 C -0.190 4.190 21 C -0.043 4.043 22 C -0.194 4.194 23 C 0.362 3.638 24 N -0.396 5.396 25 C -0.015 4.015 26 C -0.182 4.182 27 C -0.199 4.199 28 C 0.013 3.987 29 N -0.510 5.510 30 C 0.192 3.808 31 H 0.255 0.745 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.180 0.820 39 H 0.146 0.854 40 H 0.169 0.831 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.170 0.830 44 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.515 -15.292 -9.517 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.364 4.364 8 H 0.099 0.901 9 N -0.320 5.320 10 C 0.046 3.954 11 C -0.001 4.001 12 H 0.135 0.865 13 C -0.190 4.190 14 C 0.031 3.969 15 H 0.127 0.873 16 C -0.056 4.056 17 N -0.330 5.330 18 C 0.365 3.635 19 O -0.426 6.426 20 C -0.196 4.196 21 C -0.069 4.069 22 C -0.216 4.216 23 C 0.134 3.866 24 N -0.071 5.071 25 C -0.140 4.140 26 C -0.206 4.206 27 C -0.222 4.222 28 C -0.113 4.113 29 N -0.221 5.221 30 C 0.033 3.967 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.196 0.804 39 H 0.164 0.836 40 H 0.186 0.814 41 H 0.162 0.838 42 H 0.160 0.840 43 H 0.187 0.813 44 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.150 -15.396 -9.830 18.732 hybrid contribution 0.933 1.421 0.283 1.723 sum 5.083 -13.975 -9.546 17.671 Atomic orbital electron populations 1.69910 1.04976 1.25491 1.55959 1.24839 0.95693 0.97809 1.01757 0.86114 0.78589 0.83367 0.77603 1.21566 1.21620 1.20579 1.19034 0.90404 0.81982 1.44994 0.90067 1.45259 1.01320 0.99244 1.86205 1.21863 0.84725 0.87156 1.01621 1.24389 0.97995 0.97749 0.80010 0.86523 1.24213 0.96435 0.98990 0.99336 1.23218 0.96792 0.86441 0.90443 0.87263 1.23750 0.80465 0.98715 1.02662 1.49088 1.09176 1.59075 1.15658 1.17438 0.85784 0.78108 0.82149 1.90768 1.13789 1.58683 1.79347 1.21028 0.95249 1.04981 0.98349 1.23093 0.95075 0.93000 0.95693 1.21543 1.01438 1.03044 0.95529 1.18496 0.90012 0.92328 0.85740 1.41498 1.09458 1.42502 1.13640 1.21947 0.85674 1.08043 0.98337 1.21049 0.98640 1.03996 0.96898 1.21075 0.93621 1.07233 1.00304 1.22124 0.98793 1.00656 0.89686 1.67081 1.11137 1.23197 1.20712 1.22765 1.00109 0.88486 0.85351 0.93461 0.92350 0.93299 0.91470 0.89500 0.91957 0.90175 0.80389 0.83646 0.81399 0.83841 0.83992 0.81274 0.80436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.92 10.56 55.49 0.59 -25.33 16 2 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 3 Si 0.91 21.03 29.55 -169.99 -5.02 16.00 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.24 -5.97 10.38 -15.06 -0.16 -6.12 16 8 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.60 -13.40 3.02 -156.71 -0.47 -13.88 16 10 C 0.17 3.90 4.75 -1.97 -0.01 3.89 16 11 C 0.10 1.82 5.22 -62.62 -0.33 1.49 16 12 H 0.12 2.04 8.07 -51.93 -0.42 1.63 16 13 C -0.15 -2.31 6.82 -22.13 -0.15 -2.46 16 14 C 0.14 2.34 5.52 -62.59 -0.35 1.99 16 15 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 16 C 0.07 1.03 4.24 -1.68 -0.01 1.03 16 17 N -0.60 -10.22 2.95 -158.02 -0.47 -10.69 16 18 C 0.58 10.12 7.85 -12.42 -0.10 10.02 16 19 O -0.55 -11.07 16.76 5.29 0.09 -10.99 16 20 C -0.19 -2.78 5.89 -104.82 -0.62 -3.40 16 21 C -0.04 -0.54 8.81 -38.91 -0.34 -0.88 16 22 C -0.19 -2.18 9.46 -39.32 -0.37 -2.55 16 23 C 0.36 4.64 7.48 -154.56 -1.16 3.49 16 24 N -0.40 -4.71 2.96 -62.65 -0.19 -4.89 16 25 C -0.01 -0.15 10.71 -16.61 -0.18 -0.32 16 26 C -0.18 -1.71 10.86 -39.76 -0.43 -2.14 16 27 C -0.20 -1.97 10.86 -39.76 -0.43 -2.40 16 28 C 0.01 0.15 10.99 -16.61 -0.18 -0.03 16 29 N -0.51 -7.04 9.80 -12.00 -0.12 -7.15 16 30 C 0.19 2.68 10.76 -17.15 -0.18 2.49 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.06 1.47 7.46 -51.93 -0.39 1.09 16 33 H 0.05 1.30 7.67 -51.93 -0.40 0.90 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.06 0.72 6.77 -51.93 -0.35 0.37 16 37 H 0.08 1.30 6.95 -51.93 -0.36 0.94 16 38 H 0.18 2.05 3.02 -52.49 -0.16 1.89 16 39 H 0.15 1.21 6.66 -52.49 -0.35 0.86 16 40 H 0.17 1.18 6.96 -52.48 -0.37 0.82 16 41 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.17 1.76 8.03 -52.49 -0.42 1.33 16 44 H 0.18 2.30 7.67 -52.49 -0.40 1.90 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -31.80 358.96 -10.54 -42.34 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.28 Total: 5.29 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -5.09 Total: 3.89 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.66 Total: -61.94 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.80 -10.54 -42.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032688717.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.914 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds