Wall clock time and date at job start Sat Apr 11 2020 05:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30936 * 122.90872 * 2 1 4 4 C 1.29427 * 117.36754 * 179.97438 * 3 2 1 5 5 C 1.50696 * 124.80868 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47118 * 89.95720 * 5 4 3 7 7 C 1.52997 * 109.47040 * 65.00397 * 6 5 4 8 8 C 1.53002 * 109.47360 * 185.00351 * 6 5 4 9 9 S 1.70953 * 110.38861 * 359.97438 * 4 3 2 10 10 C 1.35669 * 122.89798 * 179.97438 * 2 1 3 11 11 C 1.46682 * 126.13324 * 0.05787 * 10 2 1 12 12 O 1.21686 * 119.99837 * 359.97438 * 11 10 2 13 13 N 1.34774 * 119.99625 * 179.97438 * 11 10 2 14 14 C 1.47026 * 125.65384 * 359.69665 * 13 11 10 15 15 C 1.54330 * 107.26792 * 178.84813 * 14 13 11 16 16 C 1.55162 * 103.01791 * 338.13934 * 15 14 13 17 17 O 1.42895 * 111.00669 * 277.23008 * 16 15 14 18 18 C 1.50703 * 111.00148 * 153.38076 * 16 15 14 19 19 H 1.07992 * 120.00330 * 272.62916 * 18 16 15 20 20 C 1.37880 * 119.99866 * 92.62896 * 18 16 15 21 21 N 1.31510 * 119.99978 * 173.51209 * 20 18 16 22 22 Si 1.86801 * 119.99881 * 353.50732 * 20 18 16 23 23 H 1.48507 * 109.46925 * 87.32912 * 22 20 18 24 24 H 1.48500 * 109.47325 * 207.32453 * 22 20 18 25 25 H 1.48499 * 109.47653 * 327.32620 * 22 20 18 26 26 C 1.47424 * 125.64555 * 180.02562 * 13 11 10 27 27 H 1.09002 * 109.47312 * 270.02881 * 1 2 3 28 28 H 1.09005 * 109.46717 * 30.02375 * 1 2 3 29 29 H 1.09000 * 109.47245 * 150.02511 * 1 2 3 30 30 H 1.09001 * 109.47629 * 209.95589 * 5 4 3 31 31 H 1.09001 * 109.47281 * 329.96453 * 5 4 3 32 32 H 1.08999 * 109.46825 * 305.00528 * 6 5 4 33 33 H 1.09004 * 109.46885 * 300.00187 * 7 6 5 34 34 H 1.08996 * 109.47373 * 59.99426 * 7 6 5 35 35 H 1.08994 * 109.47514 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.46885 * 59.99717 * 8 6 5 37 37 H 1.08996 * 109.47373 * 179.97438 * 8 6 5 38 38 H 1.09005 * 109.46685 * 300.00173 * 8 6 5 39 39 H 1.08997 * 109.87841 * 298.39485 * 14 13 11 40 40 H 1.09000 * 109.87696 * 59.55794 * 14 13 11 41 41 H 1.08997 * 110.84780 * 219.67465 * 15 14 13 42 42 H 1.08997 * 110.67067 * 96.52214 * 15 14 13 43 43 H 0.96700 * 114.00519 * 168.40145 * 17 16 15 44 44 H 0.97006 * 120.00243 * 179.97438 * 21 20 18 45 45 H 1.09007 * 110.36729 * 322.93529 * 26 13 11 46 46 H 1.09004 * 110.36902 * 85.14706 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2184 1.0993 0.0000 4 6 3.5066 0.9743 0.0005 5 6 4.4823 2.1227 0.0012 6 6 4.8111 2.5118 1.4439 7 6 5.5448 1.3572 2.1290 8 6 5.7025 3.7554 1.4463 9 16 3.9447 -0.6782 0.0018 10 6 2.2439 -1.1391 0.0005 11 6 1.7190 -2.5088 -0.0001 12 8 0.5172 -2.6998 -0.0006 13 7 2.5678 -3.5557 0.0000 14 6 4.0355 -3.4690 -0.0057 15 6 4.5798 -4.9127 0.0264 16 6 3.3916 -5.7213 0.6111 17 8 3.3730 -5.6452 2.0379 18 6 3.4349 -7.1553 0.1495 19 1 2.9675 -7.4369 -0.7824 20 6 4.0713 -8.1076 0.9170 21 7 4.0007 -9.3772 0.5813 22 14 5.0340 -7.5945 2.4334 23 1 4.1212 -7.5381 3.6034 24 1 6.1115 -8.5827 2.6935 25 1 5.6344 -6.2550 2.2089 26 6 2.1783 -4.9775 -0.0011 27 1 -0.3634 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5134 30 1 5.3964 1.8234 -0.5117 31 1 4.0398 2.9758 -0.5132 32 1 3.8876 2.7257 1.9820 33 1 4.9097 0.4712 2.1272 34 1 6.4682 1.1432 1.5909 35 1 5.7786 1.6341 3.1569 36 1 5.1798 4.5780 0.9583 37 1 5.9363 4.0328 2.4741 38 1 6.6260 3.5414 0.9082 39 1 4.3734 -2.9633 -0.9102 40 1 4.3780 -2.9259 0.8752 41 1 5.4519 -4.9842 0.6764 42 1 4.8214 -5.2553 -0.9797 43 1 2.5596 -5.9804 2.4392 44 1 4.4488 -10.0473 1.1211 45 1 1.2911 -5.1283 0.6141 46 1 1.9955 -5.3201 -1.0196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592839688.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:29 Heat of formation + Delta-G solvation = -51.794798 kcal Electronic energy + Delta-G solvation = -27733.992386 eV Core-core repulsion = 23943.015392 eV Total energy + Delta-G solvation = -3790.976995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.39074 -39.51482 -37.65147 -36.71939 -34.90034 -32.44196 -32.13078 -30.69018 -28.89535 -28.53319 -27.92584 -27.52412 -25.24500 -23.34227 -22.79640 -21.21282 -20.48378 -19.91906 -18.50743 -17.97109 -17.56292 -16.63661 -15.89346 -15.80079 -15.34043 -15.17476 -15.06983 -14.67240 -14.26892 -14.10858 -13.89848 -13.71093 -13.38011 -13.00481 -12.77196 -12.65476 -12.54005 -12.48112 -12.41652 -12.20347 -12.01853 -11.76000 -11.68642 -11.50982 -11.28175 -11.23792 -11.14561 -11.05364 -10.58912 -10.49588 -10.30903 -9.82870 -9.62268 -9.46371 -9.28512 -8.88424 -8.70945 -8.58181 -8.18795 -6.25296 -4.38193 0.21631 1.14426 1.56516 2.41787 3.19256 3.28848 3.41014 3.47836 3.63842 3.81504 4.43836 4.46339 4.49821 4.60219 4.65731 4.94367 4.96941 5.01755 5.08208 5.15106 5.22835 5.24332 5.32008 5.39392 5.40654 5.52204 5.59778 5.65374 5.67579 5.71709 5.77851 5.83011 5.85876 5.92858 5.95548 5.99134 6.30447 6.36127 6.42492 6.57408 6.60273 6.94510 7.37135 7.55947 7.74427 8.05543 8.28214 8.54045 8.74834 9.35556 10.83376 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.003424 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.107990 B = 8175.972403 C = 9422.023682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.142 3.858 3 N -0.479 5.479 4 C 0.041 3.959 5 C -0.041 4.041 6 C -0.091 4.091 7 C -0.159 4.159 8 C -0.145 4.145 9 S 0.185 5.815 10 C -0.293 4.293 11 C 0.604 3.396 12 O -0.534 6.534 13 N -0.603 5.603 14 C 0.089 3.911 15 C -0.116 4.116 16 C 0.221 3.779 17 O -0.559 6.559 18 C -0.553 4.553 19 H 0.082 0.918 20 C 0.076 3.924 21 N -0.886 5.886 22 Si 0.950 3.050 23 H -0.292 1.292 24 H -0.325 1.325 25 H -0.269 1.269 26 C 0.091 3.909 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.372 0.628 44 H 0.268 0.732 45 H 0.075 0.925 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.392 22.904 -0.046 23.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.004 3.996 3 N -0.194 5.194 4 C -0.234 4.234 5 C -0.082 4.082 6 C -0.111 4.111 7 C -0.217 4.217 8 C -0.202 4.202 9 S 0.444 5.556 10 C -0.416 4.416 11 C 0.392 3.608 12 O -0.414 6.414 13 N -0.335 5.335 14 C -0.036 4.036 15 C -0.155 4.155 16 C 0.180 3.820 17 O -0.367 6.367 18 C -0.591 4.591 19 H 0.100 0.900 20 C -0.130 4.130 21 N -0.520 5.520 22 Si 0.786 3.214 23 H -0.220 1.220 24 H -0.257 1.257 25 H -0.196 1.196 26 C -0.030 4.030 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.221 0.779 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.124 22.920 -0.151 23.289 hybrid contribution -0.867 -0.057 0.815 1.192 sum 3.257 22.863 0.665 23.104 Atomic orbital electron populations 1.20632 0.86139 1.04279 1.03549 1.20597 0.98517 0.85010 0.95460 1.66089 1.04538 1.31520 1.17220 1.27562 0.94514 1.00259 1.01027 1.20437 0.95450 0.93839 0.98473 1.21102 0.99715 0.95948 0.94311 1.22033 1.00584 0.98144 1.00915 1.21817 0.99477 0.96757 1.02186 1.84314 1.05650 0.99834 1.65781 1.25524 0.96123 0.99165 1.20809 1.16280 0.85454 0.81758 0.77344 1.90758 1.13841 1.84695 1.52127 1.48420 1.06845 1.07110 1.71125 1.22269 0.80248 1.00522 1.00527 1.22981 0.99754 0.90140 1.02581 1.20243 0.89459 0.94506 0.77758 1.86113 1.42861 1.85935 1.21769 1.21076 1.38968 0.89406 1.09610 0.89960 1.25113 0.95015 0.94402 0.98457 1.69962 1.41722 1.00633 1.39694 0.85658 0.78081 0.76332 0.81347 1.22005 1.25693 1.19557 1.23208 1.00199 0.77383 1.02240 0.90334 0.91029 0.88161 0.89431 0.88690 0.90487 0.92447 0.92126 0.92049 0.92404 0.92237 0.92365 0.91789 0.91485 0.89798 0.89250 0.77939 0.92307 0.90707 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.70 36.01 0.35 -0.82 16 2 C 0.14 2.12 6.79 -83.89 -0.57 1.55 16 3 N -0.48 -6.62 10.50 -7.70 -0.08 -6.70 16 4 C 0.04 0.48 6.01 -13.29 -0.08 0.40 16 5 C -0.04 -0.34 5.27 -27.88 -0.15 -0.48 16 6 C -0.09 -0.69 2.91 -90.62 -0.26 -0.95 16 7 C -0.16 -1.27 8.89 37.16 0.33 -0.94 16 8 C -0.14 -0.84 9.19 37.16 0.34 -0.49 16 9 S 0.18 2.26 17.11 -107.50 -1.84 0.42 16 10 C -0.29 -4.57 6.40 -37.09 -0.24 -4.81 16 11 C 0.60 10.97 7.81 -12.85 -0.10 10.87 16 12 O -0.53 -10.75 14.52 5.20 0.08 -10.68 16 13 N -0.60 -10.87 3.33 -172.04 -0.57 -11.44 16 14 C 0.09 1.42 5.19 -3.06 -0.02 1.41 16 15 C -0.12 -2.16 5.90 -24.89 -0.15 -2.30 16 16 C 0.22 4.67 0.70 -89.61 -0.06 4.60 16 17 O -0.56 -11.75 8.52 -35.23 -0.30 -12.05 16 18 C -0.55 -14.08 8.88 -34.44 -0.31 -14.39 16 19 H 0.08 2.28 8.00 -52.49 -0.42 1.86 16 20 C 0.08 2.03 5.46 -17.82 -0.10 1.94 16 21 N -0.89 -25.58 13.96 55.43 0.77 -24.80 16 22 Si 0.95 22.62 24.93 -169.99 -4.24 18.38 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.33 -7.99 7.11 56.52 0.40 -7.59 16 25 H -0.27 -6.21 5.42 56.52 0.31 -5.91 16 26 C 0.09 1.79 6.07 -2.52 -0.02 1.77 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.10 1.49 6.01 -51.93 -0.31 1.17 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.55 6.13 -51.93 -0.32 0.23 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.06 0.89 7.05 -51.93 -0.37 0.53 16 40 H 0.07 1.03 6.85 -51.93 -0.36 0.68 16 41 H 0.08 1.58 6.65 -51.93 -0.35 1.24 16 42 H 0.09 1.61 8.03 -51.93 -0.42 1.19 16 43 H 0.37 7.02 8.99 45.56 0.41 7.43 16 44 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.07 1.48 8.02 -51.93 -0.42 1.07 16 46 H 0.08 1.52 7.99 -51.93 -0.41 1.11 16 LS Contribution 371.10 15.07 5.59 5.59 Total: -1.00 -31.04 371.10 -8.02 -39.07 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.41 Total: 4.85 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -1.02 Total: -2.66 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.12 Total: -42.94 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.22 Total: -22.72 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.24 Total: 18.38 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.84 Total: 0.42 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.04 -8.02 -39.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839688.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.728 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds