Wall clock time and date at job start Sat Apr 11 2020 05:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30936 * 122.90872 * 2 1 4 4 C 1.29427 * 117.36754 * 179.97438 * 3 2 1 5 5 C 1.50696 * 124.80868 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47118 * 89.95720 * 5 4 3 7 7 C 1.52997 * 109.47040 * 65.00397 * 6 5 4 8 8 C 1.53002 * 109.47360 * 185.00351 * 6 5 4 9 9 S 1.70953 * 110.38861 * 359.97438 * 4 3 2 10 10 C 1.35669 * 122.89798 * 179.97438 * 2 1 3 11 11 C 1.46682 * 126.13324 * 0.05787 * 10 2 1 12 12 O 1.21686 * 119.99837 * 359.97438 * 11 10 2 13 13 N 1.34774 * 119.99625 * 179.97438 * 11 10 2 14 14 C 1.47026 * 125.65384 * 359.69665 * 13 11 10 15 15 C 1.54330 * 107.26792 * 178.84813 * 14 13 11 16 16 C 1.55162 * 103.01791 * 338.13934 * 15 14 13 17 17 O 1.42895 * 111.00669 * 277.23008 * 16 15 14 18 18 C 1.50703 * 111.00148 * 153.38076 * 16 15 14 19 19 H 1.07992 * 120.00330 * 272.62916 * 18 16 15 20 20 C 1.37880 * 119.99866 * 92.62896 * 18 16 15 21 21 N 1.31510 * 119.99978 * 173.51209 * 20 18 16 22 22 Si 1.86801 * 119.99881 * 353.50732 * 20 18 16 23 23 H 1.48507 * 109.46925 * 87.32912 * 22 20 18 24 24 H 1.48500 * 109.47325 * 207.32453 * 22 20 18 25 25 H 1.48499 * 109.47653 * 327.32620 * 22 20 18 26 26 C 1.47424 * 125.64555 * 180.02562 * 13 11 10 27 27 H 1.09002 * 109.47312 * 270.02881 * 1 2 3 28 28 H 1.09005 * 109.46717 * 30.02375 * 1 2 3 29 29 H 1.09000 * 109.47245 * 150.02511 * 1 2 3 30 30 H 1.09001 * 109.47629 * 209.95589 * 5 4 3 31 31 H 1.09001 * 109.47281 * 329.96453 * 5 4 3 32 32 H 1.08999 * 109.46825 * 305.00528 * 6 5 4 33 33 H 1.09004 * 109.46885 * 300.00187 * 7 6 5 34 34 H 1.08996 * 109.47373 * 59.99426 * 7 6 5 35 35 H 1.08994 * 109.47514 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.46885 * 59.99717 * 8 6 5 37 37 H 1.08996 * 109.47373 * 179.97438 * 8 6 5 38 38 H 1.09005 * 109.46685 * 300.00173 * 8 6 5 39 39 H 1.08997 * 109.87841 * 298.39485 * 14 13 11 40 40 H 1.09000 * 109.87696 * 59.55794 * 14 13 11 41 41 H 1.08997 * 110.84780 * 219.67465 * 15 14 13 42 42 H 1.08997 * 110.67067 * 96.52214 * 15 14 13 43 43 H 0.96700 * 114.00519 * 168.40145 * 17 16 15 44 44 H 0.97006 * 120.00243 * 179.97438 * 21 20 18 45 45 H 1.09007 * 110.36729 * 322.93529 * 26 13 11 46 46 H 1.09004 * 110.36902 * 85.14706 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2184 1.0993 0.0000 4 6 3.5066 0.9743 0.0005 5 6 4.4823 2.1227 0.0012 6 6 4.8111 2.5118 1.4439 7 6 5.5448 1.3572 2.1290 8 6 5.7025 3.7554 1.4463 9 16 3.9447 -0.6782 0.0018 10 6 2.2439 -1.1391 0.0005 11 6 1.7190 -2.5088 -0.0001 12 8 0.5172 -2.6998 -0.0006 13 7 2.5678 -3.5557 0.0000 14 6 4.0355 -3.4690 -0.0057 15 6 4.5798 -4.9127 0.0264 16 6 3.3916 -5.7213 0.6111 17 8 3.3730 -5.6452 2.0379 18 6 3.4349 -7.1553 0.1495 19 1 2.9675 -7.4369 -0.7824 20 6 4.0713 -8.1076 0.9170 21 7 4.0007 -9.3772 0.5813 22 14 5.0340 -7.5945 2.4334 23 1 4.1212 -7.5381 3.6034 24 1 6.1115 -8.5827 2.6935 25 1 5.6344 -6.2550 2.2089 26 6 2.1783 -4.9775 -0.0011 27 1 -0.3634 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5134 30 1 5.3964 1.8234 -0.5117 31 1 4.0398 2.9758 -0.5132 32 1 3.8876 2.7257 1.9820 33 1 4.9097 0.4712 2.1272 34 1 6.4682 1.1432 1.5909 35 1 5.7786 1.6341 3.1569 36 1 5.1798 4.5780 0.9583 37 1 5.9363 4.0328 2.4741 38 1 6.6260 3.5414 0.9082 39 1 4.3734 -2.9633 -0.9102 40 1 4.3780 -2.9259 0.8752 41 1 5.4519 -4.9842 0.6764 42 1 4.8214 -5.2553 -0.9797 43 1 2.5596 -5.9804 2.4392 44 1 4.4488 -10.0473 1.1211 45 1 1.2911 -5.1283 0.6141 46 1 1.9955 -5.3201 -1.0196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592839688.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:29 Heat of formation + Delta-G solvation = -73.184457 kcal Electronic energy + Delta-G solvation = -27734.919912 eV Core-core repulsion = 23943.015392 eV Total energy + Delta-G solvation = -3791.904520 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.59269 -40.81763 -39.13514 -37.40976 -36.48170 -34.47040 -33.13024 -32.21915 -30.32325 -29.41097 -29.21877 -28.04405 -26.98795 -24.47061 -24.02779 -22.47120 -21.57477 -21.14748 -19.86081 -19.32017 -19.03119 -17.91216 -17.24259 -17.14162 -16.75226 -16.56066 -16.15769 -16.05857 -15.40737 -15.12161 -15.06189 -14.83590 -14.59990 -14.57244 -14.10176 -13.93540 -13.73642 -13.46794 -13.41349 -13.36044 -13.12217 -13.04972 -12.79567 -12.76856 -12.45939 -12.34759 -12.28216 -12.07014 -12.00400 -11.84477 -11.61428 -11.29554 -11.14302 -10.72862 -10.64276 -10.51031 -10.39316 -9.97418 -9.51689 -8.34331 -6.48633 -0.84140 0.13061 0.54008 1.30333 1.51325 1.53959 1.73947 1.81493 2.00383 2.45514 2.91321 2.96039 3.35016 3.50636 3.73122 3.74525 3.90267 3.94040 3.98149 4.07814 4.13475 4.28895 4.32741 4.42289 4.52444 4.64139 4.68766 4.71026 4.74969 4.80511 4.85134 4.89556 4.90415 4.99921 5.07042 5.08327 5.10739 5.24872 5.30269 5.32213 5.40786 5.46617 5.49792 6.04161 6.31778 6.56917 6.57979 6.87296 6.90200 7.29373 8.78419 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.003424 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.107990 B = 8175.972403 C = 9422.023682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.144 3.856 3 N -0.498 5.498 4 C 0.057 3.943 5 C -0.044 4.044 6 C -0.087 4.087 7 C -0.162 4.162 8 C -0.141 4.141 9 S 0.223 5.777 10 C -0.333 4.333 11 C 0.602 3.398 12 O -0.564 6.564 13 N -0.607 5.607 14 C 0.095 3.905 15 C -0.114 4.114 16 C 0.219 3.781 17 O -0.559 6.559 18 C -0.547 4.547 19 H 0.047 0.953 20 C 0.027 3.973 21 N -0.935 5.935 22 Si 1.008 2.992 23 H -0.288 1.288 24 H -0.337 1.337 25 H -0.252 1.252 26 C 0.099 3.901 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.381 0.619 44 H 0.268 0.732 45 H 0.067 0.933 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.432 26.308 0.467 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.005 3.995 3 N -0.214 5.214 4 C -0.217 4.217 5 C -0.085 4.085 6 C -0.107 4.107 7 C -0.219 4.219 8 C -0.198 4.198 9 S 0.484 5.516 10 C -0.456 4.456 11 C 0.392 3.608 12 O -0.446 6.446 13 N -0.338 5.338 14 C -0.029 4.029 15 C -0.152 4.152 16 C 0.178 3.822 17 O -0.368 6.368 18 C -0.585 4.585 19 H 0.065 0.935 20 C -0.173 4.173 21 N -0.573 5.573 22 Si 0.841 3.159 23 H -0.215 1.215 24 H -0.269 1.269 25 H -0.177 1.177 26 C -0.023 4.023 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.131 0.869 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.230 0.770 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.176 26.350 0.358 27.067 hybrid contribution -1.536 -1.019 0.604 1.940 sum 4.639 25.331 0.962 25.771 Atomic orbital electron populations 1.20601 0.85874 1.04193 1.03745 1.20821 0.99137 0.85256 0.94328 1.66180 1.05426 1.30941 1.18820 1.28243 0.94446 1.01055 0.97990 1.20712 0.95558 0.92893 0.99295 1.21065 0.99416 0.96731 0.93479 1.22068 1.00833 0.97437 1.01595 1.21788 0.99544 0.95818 1.02689 1.83997 1.02743 0.99757 1.65129 1.25317 0.98648 0.97798 1.23844 1.16604 0.85087 0.82631 0.76492 1.90734 1.15142 1.85387 1.53382 1.48393 1.07739 1.06215 1.71476 1.22308 0.78856 0.99164 1.02538 1.22890 0.98550 0.91238 1.02529 1.20119 0.91572 0.92515 0.77996 1.86070 1.43637 1.85748 1.21373 1.21286 1.37271 0.91887 1.08033 0.93492 1.25850 0.96065 0.94175 1.01216 1.70081 1.43786 1.01921 1.41496 0.84722 0.76656 0.76253 0.78257 1.21509 1.26929 1.17744 1.22887 0.99262 0.78753 1.01411 0.89949 0.89308 0.89926 0.86927 0.87650 0.92117 0.94238 0.90721 0.91656 0.91883 0.91993 0.91186 0.89155 0.90119 0.89425 0.88972 0.76985 0.92367 0.91459 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.25 9.70 71.24 0.69 -1.56 16 2 C 0.14 4.11 6.79 42.10 0.29 4.40 16 3 N -0.50 -12.75 10.50 -178.29 -1.87 -14.62 16 4 C 0.06 1.16 6.01 88.46 0.53 1.69 16 5 C -0.04 -0.56 5.27 29.85 0.16 -0.40 16 6 C -0.09 -1.05 2.91 -10.79 -0.03 -1.08 16 7 C -0.16 -2.08 8.89 71.98 0.64 -1.44 16 8 C -0.14 -1.13 9.19 71.98 0.66 -0.47 16 9 S 0.22 4.82 17.11 -56.49 -0.97 3.85 16 10 C -0.33 -9.96 6.40 23.88 0.15 -9.80 16 11 C 0.60 21.60 7.81 86.45 0.68 22.27 16 12 O -0.56 -23.06 14.52 -4.31 -0.06 -23.12 16 13 N -0.61 -21.25 3.33 -816.43 -2.71 -23.96 16 14 C 0.09 2.80 5.19 86.73 0.45 3.25 16 15 C -0.11 -4.00 5.90 31.79 0.19 -3.81 16 16 C 0.22 9.10 0.70 -10.14 -0.01 9.09 16 17 O -0.56 -22.60 8.52 -148.98 -1.27 -23.87 16 18 C -0.55 -28.32 8.88 25.60 0.23 -28.09 16 19 H 0.05 2.71 8.00 -2.91 -0.02 2.69 16 20 C 0.03 1.48 5.46 84.66 0.46 1.94 16 21 N -0.94 -55.54 13.96 21.45 0.30 -55.24 16 22 Si 1.01 46.21 24.93 68.60 1.71 47.92 16 23 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 24 H -0.34 -16.01 7.11 99.48 0.71 -15.31 16 25 H -0.25 -10.76 5.42 99.48 0.54 -10.22 16 26 C 0.10 3.91 6.07 86.86 0.53 4.44 16 27 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.08 2.49 6.01 -2.39 -0.01 2.47 16 30 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.04 0.65 6.13 -2.38 -0.01 0.63 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 39 H 0.09 2.22 7.05 -2.39 -0.02 2.21 16 40 H 0.08 2.21 6.85 -2.39 -0.02 2.19 16 41 H 0.09 3.04 6.65 -2.39 -0.02 3.02 16 42 H 0.09 3.17 8.03 -2.39 -0.02 3.15 16 43 H 0.38 13.93 8.99 -74.06 -0.67 13.27 16 44 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 45 H 0.07 2.72 8.02 -2.38 -0.02 2.70 16 46 H 0.07 2.75 7.99 -2.39 -0.02 2.73 16 Total: -1.00 -68.08 371.10 0.90 -67.18 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.16 Total: 21.42 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 5.61 Total: 0.43 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -4.29 Total: -93.82 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -1.33 Total: -46.99 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.71 Total: 47.92 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -0.97 Total: 3.85 kcal Total: -68.08 0.90 -67.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839688.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.001 kcal (2) G-P(sol) polarization free energy of solvation -68.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds