Wall clock time and date at job start Sat Apr 11 2020 05:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47242 * 2 1 4 4 C 1.52999 * 109.47301 * 120.00257 * 2 1 3 5 5 H 1.09003 * 109.49204 * 300.05431 * 4 2 1 6 6 C 1.53241 * 109.49300 * 179.97438 * 4 2 1 7 7 N 1.47077 * 108.51857 * 186.18399 * 6 4 2 8 8 S 1.65605 * 120.87970 * 231.18731 * 7 6 4 9 9 O 1.42095 * 106.40539 * 336.46187 * 8 7 6 10 10 O 1.42104 * 106.40155 * 203.53787 * 8 7 6 11 11 C 1.76205 * 107.21707 * 90.00411 * 8 7 6 12 12 C 1.38662 * 119.86912 * 269.97666 * 11 8 7 13 13 C 1.38613 * 120.49690 * 180.02562 * 12 11 8 14 14 C 1.37640 * 120.24933 * 0.02562 * 13 12 11 15 15 C 1.40703 * 119.74636 * 359.73947 * 14 13 12 16 16 C 1.41394 * 120.24833 * 180.27951 * 15 14 13 17 17 H 1.08000 * 120.00270 * 204.52368 * 16 15 14 18 18 C 1.39946 * 119.99500 * 24.52573 * 16 15 14 19 19 N 1.30818 * 120.00248 * 17.72653 * 18 16 15 20 20 Si 1.86808 * 119.99543 * 197.72995 * 18 16 15 21 21 H 1.48496 * 109.47286 * 94.69293 * 20 18 16 22 22 H 1.48497 * 109.46819 * 214.69229 * 20 18 16 23 23 H 1.48496 * 109.46880 * 334.68805 * 20 18 16 24 24 C 1.37591 * 119.87637 * 90.00271 * 11 8 7 25 25 C 1.47086 * 118.24027 * 51.45981 * 7 6 4 26 26 C 1.53697 * 108.27214 * 308.48178 * 25 7 6 27 27 N 1.46897 * 109.25634 * 54.08414 * 26 25 7 28 28 H 1.09002 * 109.46852 * 299.99718 * 1 2 3 29 29 H 1.09003 * 109.47120 * 59.99629 * 1 2 3 30 30 H 1.09000 * 109.47059 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47361 * 240.00377 * 2 1 3 32 32 H 1.08996 * 109.47081 * 299.99983 * 3 2 1 33 33 H 1.09002 * 109.46967 * 60.00353 * 3 2 1 34 34 H 1.09004 * 109.47232 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.62696 * 66.47519 * 6 4 2 36 36 H 1.09000 * 109.63308 * 305.89253 * 6 4 2 37 37 H 1.07992 * 119.74992 * 359.97438 * 12 11 8 38 38 H 1.08000 * 119.87642 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.12754 * 179.97438 * 14 13 12 40 40 H 0.97005 * 119.99661 * 179.97438 * 19 18 16 41 41 H 1.08001 * 120.13154 * 359.94583 * 24 11 8 42 42 H 1.08995 * 109.62694 * 68.25255 * 25 7 6 43 43 H 1.09000 * 109.62847 * 188.83634 * 25 7 6 44 44 H 1.08997 * 109.65270 * 294.07662 * 26 25 7 45 45 H 1.08997 * 109.43780 * 173.95707 * 26 25 7 46 46 H 1.00901 * 111.00322 * 60.89851 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6761 -0.2083 2.1394 6 6 3.5724 -0.7221 1.2493 7 7 4.0390 -1.5456 2.3751 8 16 5.1539 -0.9610 3.4511 9 8 5.8674 0.0637 2.7728 10 8 5.7850 -2.0946 4.0307 11 6 4.2617 -0.1707 4.7488 12 6 3.9520 1.1775 4.6525 13 6 3.2512 1.8124 5.6660 14 6 2.8551 1.1093 6.7810 15 6 3.1595 -0.2603 6.8872 16 6 2.7527 -0.9942 8.0252 17 1 3.2877 -1.8878 8.3112 18 6 1.6568 -0.5627 8.7810 19 7 0.8047 0.2887 8.2706 20 14 1.4107 -1.2024 10.5188 21 1 2.0108 -0.2494 11.4867 22 1 -0.0419 -1.3393 10.7947 23 1 2.0676 -2.5270 10.6562 24 6 3.8755 -0.8935 5.8541 25 6 3.4938 -2.9043 2.5164 26 6 1.9601 -2.8154 2.4698 27 7 1.5528 -2.1072 1.2489 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 3.9391 0.2978 1.3650 36 1 3.9385 -1.1417 0.3123 37 1 4.2599 1.7372 3.7818 38 1 3.0157 2.8630 5.5807 39 1 2.3095 1.6060 7.5696 40 1 0.0449 0.5875 8.7944 41 1 4.1173 -1.9435 5.9268 42 1 3.8524 -3.5296 1.6989 43 1 3.8084 -3.3277 3.4703 44 1 1.5976 -2.2730 3.3430 45 1 1.5384 -3.8205 2.4649 46 1 1.8632 -2.5994 0.4247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595410088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:46 Heat of formation + Delta-G solvation = -63.651605 kcal Electronic energy + Delta-G solvation = -28638.031373 eV Core-core repulsion = 24846.540228 eV Total energy + Delta-G solvation = -3791.491144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.25564 -37.66177 -36.79852 -35.42391 -35.33317 -33.87320 -32.93017 -30.13669 -30.04587 -29.81499 -27.29214 -25.51364 -25.13223 -23.76588 -22.00619 -21.27356 -21.01282 -20.18350 -18.73969 -18.00994 -17.17316 -16.01010 -15.85820 -15.44643 -15.26748 -14.93432 -14.79426 -14.52268 -14.38602 -13.87601 -13.70449 -13.49970 -13.34765 -13.14211 -12.63761 -12.59259 -12.12703 -12.02664 -11.94749 -11.79297 -11.65770 -11.52075 -11.44638 -11.40730 -11.28223 -11.11864 -11.02871 -10.92801 -10.79566 -10.74308 -10.62739 -10.49431 -9.87797 -9.72738 -9.38564 -9.21880 -8.11321 -8.04988 -7.73346 -6.95361 -4.56467 0.91708 2.16337 2.60454 2.98508 3.02866 3.04380 3.38369 3.80868 4.14932 4.23525 4.39251 4.60139 4.84397 4.87999 4.93734 5.06161 5.19216 5.28159 5.32024 5.37570 5.47838 5.53888 5.63279 5.69038 5.74038 5.89667 5.91952 5.98398 6.00629 6.04088 6.12905 6.13921 6.20965 6.36112 6.41181 6.59774 6.63007 6.73963 6.89258 6.99371 7.01917 7.18928 7.35153 7.39743 7.69968 7.78079 7.91472 8.37626 8.64315 8.69039 10.00030 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011986 B = 0.004157 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.406857 B = 6734.440976 C = 7347.152732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 C -0.155 4.155 4 C 0.076 3.924 5 H 0.093 0.907 6 C 0.091 3.909 7 N -1.002 6.002 8 S 2.686 3.314 9 O -0.973 6.973 10 O -0.970 6.970 11 C -0.630 4.630 12 C -0.148 4.148 13 C -0.119 4.119 14 C -0.118 4.118 15 C 0.093 3.907 16 C -0.460 4.460 17 H 0.083 0.917 18 C 0.076 3.924 19 N -0.793 5.793 20 Si 0.911 3.089 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.260 1.260 24 C -0.126 4.126 25 C 0.086 3.914 26 C 0.043 3.957 27 N -0.673 5.673 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.283 0.717 41 H 0.110 0.890 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 -2.037 -12.693 12.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 C -0.213 4.213 4 C -0.035 4.035 5 H 0.111 0.889 6 C -0.036 4.036 7 N -0.838 5.838 8 S 2.784 3.216 9 O -0.964 6.964 10 O -0.960 6.960 11 C -0.722 4.722 12 C -0.169 4.169 13 C -0.139 4.139 14 C -0.138 4.138 15 C 0.090 3.910 16 C -0.490 4.490 17 H 0.101 0.899 18 C -0.142 4.142 19 N -0.418 5.418 20 Si 0.735 3.265 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.147 4.147 25 C -0.041 4.041 26 C -0.088 4.088 27 N -0.301 5.301 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.142 0.858 40 H 0.094 0.906 41 H 0.128 0.872 42 H 0.085 0.915 43 H 0.114 0.886 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.757 -1.876 -12.497 12.759 hybrid contribution 0.119 -0.063 1.077 1.086 sum -1.638 -1.939 -11.420 11.698 Atomic orbital electron populations 1.21701 0.94296 1.02505 1.00934 1.21067 0.96833 0.95757 0.96756 1.21939 1.01315 0.95803 1.02209 1.22048 0.91609 0.90128 0.99728 0.88890 1.22180 0.96439 0.96057 0.88894 1.57890 1.62318 1.22609 1.41019 1.01829 0.73459 0.73139 0.73207 1.93497 1.69805 1.58782 1.74306 1.93516 1.73057 1.51423 1.78051 1.29777 1.21025 1.05503 1.15929 1.20038 1.04022 0.92579 1.00239 1.20798 0.99548 0.98203 0.95339 1.21639 1.00603 0.94099 0.97432 1.17674 0.89960 0.91863 0.91538 1.19634 1.11442 1.10002 1.07885 0.89905 1.25927 0.94510 0.93844 0.99955 1.69779 1.09487 1.25662 1.36885 0.86240 0.78220 0.80428 0.81594 1.19214 1.20139 1.18359 1.20740 1.03002 0.97762 0.93191 1.22216 0.96121 0.82389 1.03410 1.22501 0.92340 0.99726 0.94224 1.60663 1.62506 1.02371 1.04543 0.92809 0.93588 0.91513 0.91444 0.92521 0.92100 0.92297 0.88692 0.91585 0.87821 0.88421 0.85763 0.90569 0.87245 0.91523 0.88595 0.89488 0.89660 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.04 37.16 0.34 -1.04 16 2 C -0.08 -0.84 2.65 -90.62 -0.24 -1.08 16 3 C -0.15 -1.53 8.85 37.16 0.33 -1.20 16 4 C 0.08 0.92 2.14 -67.59 -0.14 0.78 16 5 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 6 C 0.09 1.19 5.23 -3.60 -0.02 1.17 16 7 N -1.00 -15.19 3.32 -112.97 -0.38 -15.56 16 8 S 2.69 51.47 5.69 -107.50 -0.61 50.86 16 9 O -0.97 -20.01 16.05 -57.17 -0.92 -20.92 16 10 O -0.97 -20.54 16.04 -57.17 -0.92 -21.46 16 11 C -0.63 -13.73 5.97 -39.66 -0.24 -13.97 16 12 C -0.15 -3.19 9.53 -39.29 -0.37 -3.56 16 13 C -0.12 -2.66 10.02 -39.66 -0.40 -3.06 16 14 C -0.12 -2.91 8.70 -38.87 -0.34 -3.25 16 15 C 0.09 2.38 5.57 -106.82 -0.60 1.78 16 16 C -0.46 -11.66 9.05 -37.74 -0.34 -12.00 16 17 H 0.08 2.03 7.91 -52.49 -0.41 1.61 16 18 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 19 N -0.79 -19.36 10.95 55.55 0.61 -18.75 16 20 Si 0.91 17.88 29.60 -169.99 -5.03 12.85 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 24 C -0.13 -2.98 9.26 -38.87 -0.36 -3.34 16 25 C 0.09 1.12 6.54 -3.36 -0.02 1.10 16 26 C 0.04 0.53 6.72 -3.46 -0.02 0.50 16 27 N -0.67 -7.53 5.73 -106.20 -0.61 -8.14 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.69 7.61 -51.93 -0.40 0.29 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.58 6.58 -51.93 -0.34 0.24 16 35 H 0.09 1.30 5.88 -51.93 -0.31 0.99 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.10 2.03 7.60 -52.49 -0.40 1.63 16 38 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.12 3.12 6.16 -52.49 -0.32 2.80 16 40 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 41 H 0.11 2.49 7.60 -52.49 -0.40 2.09 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 1.35 7.21 -51.93 -0.37 0.97 16 44 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.34 3.15 8.78 -39.29 -0.35 2.80 16 LS Contribution 376.21 15.07 5.67 5.67 Total: -1.00 -29.12 376.21 -11.78 -40.90 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -7.08 Total: 10.00 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: -2.52 Total: -35.45 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: -0.38 Total: -42.45 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -1.83 Total: -42.38 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 51.47 SS G_CDS: -0.61 Total: 50.86 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.12 -11.78 -40.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595410088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.748 kcal (2) G-P(sol) polarization free energy of solvation -29.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds