Wall clock time and date at job start Sat Apr 11 2020 05:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47242 * 2 1 4 4 C 1.52999 * 109.47301 * 120.00257 * 2 1 3 5 5 H 1.09003 * 109.49204 * 300.05431 * 4 2 1 6 6 C 1.53241 * 109.49300 * 179.97438 * 4 2 1 7 7 N 1.47077 * 108.51857 * 186.18399 * 6 4 2 8 8 S 1.65605 * 120.87970 * 231.18731 * 7 6 4 9 9 O 1.42095 * 106.40539 * 336.46187 * 8 7 6 10 10 O 1.42104 * 106.40155 * 203.53787 * 8 7 6 11 11 C 1.76205 * 107.21707 * 90.00411 * 8 7 6 12 12 C 1.38662 * 119.86912 * 269.97666 * 11 8 7 13 13 C 1.38613 * 120.49690 * 180.02562 * 12 11 8 14 14 C 1.37640 * 120.24933 * 0.02562 * 13 12 11 15 15 C 1.40703 * 119.74636 * 359.73947 * 14 13 12 16 16 C 1.41394 * 120.24833 * 180.27951 * 15 14 13 17 17 H 1.08000 * 120.00270 * 204.52368 * 16 15 14 18 18 C 1.39946 * 119.99500 * 24.52573 * 16 15 14 19 19 N 1.30818 * 120.00248 * 17.72653 * 18 16 15 20 20 Si 1.86808 * 119.99543 * 197.72995 * 18 16 15 21 21 H 1.48496 * 109.47286 * 94.69293 * 20 18 16 22 22 H 1.48497 * 109.46819 * 214.69229 * 20 18 16 23 23 H 1.48496 * 109.46880 * 334.68805 * 20 18 16 24 24 C 1.37591 * 119.87637 * 90.00271 * 11 8 7 25 25 C 1.47086 * 118.24027 * 51.45981 * 7 6 4 26 26 C 1.53697 * 108.27214 * 308.48178 * 25 7 6 27 27 N 1.46897 * 109.25634 * 54.08414 * 26 25 7 28 28 H 1.09002 * 109.46852 * 299.99718 * 1 2 3 29 29 H 1.09003 * 109.47120 * 59.99629 * 1 2 3 30 30 H 1.09000 * 109.47059 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47361 * 240.00377 * 2 1 3 32 32 H 1.08996 * 109.47081 * 299.99983 * 3 2 1 33 33 H 1.09002 * 109.46967 * 60.00353 * 3 2 1 34 34 H 1.09004 * 109.47232 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.62696 * 66.47519 * 6 4 2 36 36 H 1.09000 * 109.63308 * 305.89253 * 6 4 2 37 37 H 1.07992 * 119.74992 * 359.97438 * 12 11 8 38 38 H 1.08000 * 119.87642 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.12754 * 179.97438 * 14 13 12 40 40 H 0.97005 * 119.99661 * 179.97438 * 19 18 16 41 41 H 1.08001 * 120.13154 * 359.94583 * 24 11 8 42 42 H 1.08995 * 109.62694 * 68.25255 * 25 7 6 43 43 H 1.09000 * 109.62847 * 188.83634 * 25 7 6 44 44 H 1.08997 * 109.65270 * 294.07662 * 26 25 7 45 45 H 1.08997 * 109.43780 * 173.95707 * 26 25 7 46 46 H 1.00901 * 111.00322 * 60.89851 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6761 -0.2083 2.1394 6 6 3.5724 -0.7221 1.2493 7 7 4.0390 -1.5456 2.3751 8 16 5.1539 -0.9610 3.4511 9 8 5.8674 0.0637 2.7728 10 8 5.7850 -2.0946 4.0307 11 6 4.2617 -0.1707 4.7488 12 6 3.9520 1.1775 4.6525 13 6 3.2512 1.8124 5.6660 14 6 2.8551 1.1093 6.7810 15 6 3.1595 -0.2603 6.8872 16 6 2.7527 -0.9942 8.0252 17 1 3.2877 -1.8878 8.3112 18 6 1.6568 -0.5627 8.7810 19 7 0.8047 0.2887 8.2706 20 14 1.4107 -1.2024 10.5188 21 1 2.0108 -0.2494 11.4867 22 1 -0.0419 -1.3393 10.7947 23 1 2.0676 -2.5270 10.6562 24 6 3.8755 -0.8935 5.8541 25 6 3.4938 -2.9043 2.5164 26 6 1.9601 -2.8154 2.4698 27 7 1.5528 -2.1072 1.2489 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 3.9391 0.2978 1.3650 36 1 3.9385 -1.1417 0.3123 37 1 4.2599 1.7372 3.7818 38 1 3.0157 2.8630 5.5807 39 1 2.3095 1.6060 7.5696 40 1 0.0449 0.5875 8.7944 41 1 4.1173 -1.9435 5.9268 42 1 3.8524 -3.5296 1.6989 43 1 3.8084 -3.3277 3.4703 44 1 1.5976 -2.2730 3.3430 45 1 1.5384 -3.8205 2.4649 46 1 1.8632 -2.5994 0.4247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595410088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:46 Heat of formation + Delta-G solvation = -82.443155 kcal Electronic energy + Delta-G solvation = -28638.846236 eV Core-core repulsion = 24846.540228 eV Total energy + Delta-G solvation = -3792.306007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.27172 -39.47375 -38.41201 -36.99497 -36.35368 -35.69660 -33.99445 -31.95011 -31.62160 -31.05962 -28.13265 -27.37399 -26.17918 -24.76904 -23.72468 -22.83091 -22.42266 -21.07248 -20.28880 -19.56153 -18.66021 -17.79305 -17.23223 -16.92046 -16.55558 -16.40715 -15.85814 -15.80494 -15.61094 -15.24200 -15.14290 -14.83121 -14.68110 -14.34561 -14.14311 -13.74731 -13.49918 -13.39635 -13.35508 -13.15006 -13.10849 -13.08356 -12.90435 -12.84301 -12.72640 -12.64294 -12.34040 -12.23562 -12.13182 -11.64592 -11.64151 -11.58184 -11.43816 -11.36686 -11.17526 -10.52551 -9.86473 -9.59404 -9.10823 -8.75548 -6.47967 -0.61131 0.36864 0.81141 1.36067 1.44284 1.49521 1.95708 2.15903 2.53024 2.70820 3.22634 3.27139 3.48142 3.76814 3.78724 3.98593 4.11169 4.21318 4.25677 4.30257 4.37463 4.40503 4.51379 4.56715 4.71221 4.79109 4.80960 4.86385 4.91321 4.95322 4.96727 5.02497 5.11788 5.14475 5.16823 5.19609 5.32732 5.37354 5.51148 5.53060 5.57009 5.61287 5.85264 5.90661 6.01388 6.06877 6.49531 6.59877 6.77101 6.81643 8.22349 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011986 B = 0.004157 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.406857 B = 6734.440976 C = 7347.152732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.078 4.078 3 C -0.156 4.156 4 C 0.082 3.918 5 H 0.058 0.942 6 C 0.085 3.915 7 N -0.995 5.995 8 S 2.710 3.290 9 O -0.984 6.984 10 O -0.991 6.991 11 C -0.638 4.638 12 C -0.149 4.149 13 C -0.121 4.121 14 C -0.141 4.141 15 C 0.066 3.934 16 C -0.497 4.497 17 H 0.079 0.921 18 C 0.040 3.960 19 N -0.820 5.820 20 Si 0.982 3.018 21 H -0.262 1.262 22 H -0.265 1.265 23 H -0.259 1.259 24 C -0.144 4.144 25 C 0.080 3.920 26 C 0.049 3.951 27 N -0.668 5.668 28 H 0.033 0.967 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.292 0.708 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.051 0.949 45 H 0.111 0.889 46 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.106 -2.638 -14.708 15.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 C -0.214 4.214 4 C -0.030 4.030 5 H 0.076 0.924 6 C -0.042 4.042 7 N -0.834 5.834 8 S 2.804 3.196 9 O -0.974 6.974 10 O -0.981 6.981 11 C -0.727 4.727 12 C -0.170 4.170 13 C -0.140 4.140 14 C -0.161 4.161 15 C 0.062 3.938 16 C -0.526 4.526 17 H 0.097 0.903 18 C -0.176 4.176 19 N -0.446 5.446 20 Si 0.802 3.198 21 H -0.187 1.187 22 H -0.189 1.189 23 H -0.182 1.182 24 C -0.165 4.165 25 C -0.047 4.047 26 C -0.082 4.082 27 N -0.298 5.298 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.131 0.869 40 H 0.103 0.897 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.100 0.900 44 H 0.069 0.931 45 H 0.129 0.871 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.043 -2.455 -14.505 14.853 hybrid contribution 0.196 0.135 1.541 1.559 sum -1.847 -2.321 -12.965 13.299 Atomic orbital electron populations 1.21667 0.94365 1.02311 1.00759 1.21049 0.96651 0.95698 0.96323 1.21958 1.01384 0.95798 1.02253 1.21946 0.90982 0.90604 0.99491 0.92387 1.22478 0.96965 0.95695 0.89023 1.57644 1.61939 1.23572 1.40293 1.01119 0.73420 0.72364 0.72653 1.93474 1.70443 1.59452 1.74059 1.93483 1.73936 1.51852 1.78820 1.30308 1.19975 1.05902 1.16509 1.20388 1.03221 0.92754 1.00641 1.21117 0.98784 0.99538 0.94582 1.21637 1.01940 0.94168 0.98382 1.18024 0.90777 0.92605 0.92355 1.19862 1.12775 1.10676 1.09245 0.90334 1.26725 0.93559 0.93834 1.03501 1.69815 1.09928 1.26377 1.38440 0.85184 0.78582 0.79721 0.76265 1.18670 1.18909 1.18232 1.20802 1.03899 0.97990 0.93821 1.22487 0.96604 0.81443 1.04127 1.22416 0.91745 1.00597 0.93455 1.60606 1.62381 1.02009 1.04796 0.94749 0.91994 0.91696 0.89093 0.90870 0.93720 0.92184 0.89371 0.88419 0.85510 0.85681 0.86893 0.89707 0.87389 0.88072 0.89979 0.93060 0.87094 0.82794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.04 71.98 0.65 -1.79 16 2 C -0.08 -1.37 2.65 -10.79 -0.03 -1.39 16 3 C -0.16 -2.79 8.85 71.98 0.64 -2.16 16 4 C 0.08 1.86 2.14 45.00 0.10 1.95 16 5 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 6 C 0.08 2.01 5.23 86.35 0.45 2.47 16 7 N -1.00 -28.90 3.32 -511.33 -1.70 -30.60 16 8 S 2.71 102.85 5.69 -56.49 -0.32 102.53 16 9 O -0.98 -39.31 16.05 -128.00 -2.05 -41.37 16 10 O -0.99 -41.96 16.04 -128.00 -2.05 -44.01 16 11 C -0.64 -28.35 5.97 22.22 0.13 -28.22 16 12 C -0.15 -6.48 9.53 22.46 0.21 -6.27 16 13 C -0.12 -5.48 10.02 22.22 0.22 -5.25 16 14 C -0.14 -7.26 8.70 22.73 0.20 -7.06 16 15 C 0.07 3.51 5.57 -21.29 -0.12 3.39 16 16 C -0.50 -26.32 9.05 23.46 0.21 -26.10 16 17 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 18 C 0.04 1.94 5.14 85.26 0.44 2.38 16 19 N -0.82 -41.16 10.95 21.83 0.24 -40.93 16 20 Si 0.98 37.10 29.60 68.60 2.03 39.13 16 21 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 22 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 23 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 24 C -0.14 -7.14 9.26 22.73 0.21 -6.93 16 25 C 0.08 1.96 6.54 86.50 0.57 2.53 16 26 C 0.05 1.15 6.72 86.54 0.58 1.73 16 27 N -0.67 -13.57 5.73 -489.91 -2.81 -16.37 16 28 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.21 7.61 -2.39 -0.02 1.19 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 1.06 6.58 -2.38 -0.02 1.04 16 35 H 0.09 2.25 5.88 -2.39 -0.01 2.24 16 36 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.13 4.84 7.60 -2.91 -0.02 4.82 16 38 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 39 H 0.11 5.95 6.16 -2.91 -0.02 5.93 16 40 H 0.29 13.16 8.30 -92.70 -0.77 12.39 16 41 H 0.11 5.20 7.60 -2.91 -0.02 5.18 16 42 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.08 2.28 7.21 -2.39 -0.02 2.26 16 44 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.35 5.30 8.78 -89.69 -0.79 4.52 16 Total: -1.00 -64.80 376.21 -2.00 -66.81 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.20 Total: 35.55 kcal Atomic # 6 Polarization: -75.21 SS G_CDS: 4.46 Total: -70.74 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -4.27 Total: -87.89 kcal Atomic # 8 Polarization: -81.27 SS G_CDS: -4.11 Total: -85.38 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.13 kcal Atomic # 16 Polarization: 102.85 SS G_CDS: -0.32 Total: 102.53 kcal Total: -64.80 -2.00 -66.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595410088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.635 kcal (2) G-P(sol) polarization free energy of solvation -64.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds