Wall clock time and date at job start Sat Apr 11 2020 05:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46875 * 2 1 4 4 C 1.52998 * 109.47092 * 119.99753 * 2 1 3 5 5 H 1.09009 * 109.78433 * 183.34057 * 4 2 1 6 6 C 1.53239 * 109.63245 * 303.83079 * 4 2 1 7 7 N 1.46907 * 109.34053 * 173.53937 * 6 4 2 8 8 C 1.46898 * 111.26617 * 296.89460 * 7 6 4 9 9 C 1.53244 * 109.34226 * 63.10758 * 8 7 6 10 10 N 1.47082 * 109.62733 * 62.86272 * 4 2 1 11 11 S 1.65598 * 120.88065 * 9.07991 * 10 4 2 12 12 O 1.42106 * 106.40205 * 230.46632 * 11 10 4 13 13 O 1.42100 * 106.40223 * 3.38310 * 11 10 4 14 14 C 1.76196 * 107.21969 * 116.92659 * 11 10 4 15 15 C 1.37638 * 120.13043 * 116.01117 * 14 11 10 16 16 C 1.38613 * 120.24724 * 179.72409 * 15 14 11 17 17 C 1.38654 * 120.50592 * 0.55508 * 16 15 14 18 18 C 1.37604 * 120.24370 * 359.72299 * 17 16 15 19 19 C 1.40703 * 120.12650 * 296.28818 * 14 11 10 20 20 C 1.41391 * 120.24242 * 359.97438 * 19 14 11 21 21 H 1.08005 * 120.00034 * 34.24701 * 20 19 14 22 22 C 1.39945 * 119.99802 * 214.24598 * 20 19 14 23 23 N 1.30815 * 120.00377 * 354.99827 * 22 20 19 24 24 Si 1.86808 * 119.99820 * 174.99466 * 22 20 19 25 25 H 1.48501 * 109.46987 * 90.00264 * 24 22 20 26 26 H 1.48500 * 109.46963 * 210.00236 * 24 22 20 27 27 H 1.48495 * 109.47334 * 330.00499 * 24 22 20 28 28 H 1.09002 * 109.47173 * 299.99923 * 1 2 3 29 29 H 1.08999 * 109.47014 * 60.00043 * 1 2 3 30 30 H 1.09002 * 109.46649 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47104 * 240.00108 * 2 1 3 32 32 H 1.09003 * 109.46941 * 184.33866 * 3 2 1 33 33 H 1.08992 * 109.47356 * 304.33953 * 3 2 1 34 34 H 1.08998 * 109.46790 * 64.33986 * 3 2 1 35 35 H 1.08995 * 109.49133 * 293.49595 * 6 4 2 36 36 H 1.08995 * 109.49123 * 53.58012 * 6 4 2 37 37 H 1.00896 * 110.99610 * 172.74753 * 7 6 4 38 38 H 1.08991 * 109.49551 * 303.14370 * 8 7 6 39 39 H 1.09007 * 109.49037 * 183.06291 * 8 7 6 40 40 H 1.09004 * 109.62884 * 65.87548 * 9 8 7 41 41 H 1.08996 * 109.62849 * 186.45698 * 9 8 7 42 42 H 1.08001 * 119.87170 * 359.97438 * 15 14 11 43 43 H 1.08008 * 119.74486 * 180.30643 * 16 15 14 44 44 H 1.07993 * 119.88057 * 179.75187 * 17 16 15 45 45 H 1.08001 * 120.12789 * 179.97438 * 18 17 16 46 46 H 0.96996 * 120.00581 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1284 -0.6727 1.2848 6 6 1.4540 -0.0595 2.5010 7 7 1.8212 -0.8476 3.6852 8 6 1.2421 -2.1965 3.6279 9 6 1.8195 -2.9459 2.4223 10 7 1.6089 -2.1271 1.2187 11 16 0.9047 -2.7709 -0.1347 12 8 -0.2888 -3.4090 0.2988 13 8 0.9251 -1.7493 -1.1223 14 6 1.9682 -4.0487 -0.7185 15 6 1.5355 -5.3552 -0.7322 16 6 2.3681 -6.3616 -1.1963 17 6 3.6480 -6.0672 -1.6407 18 6 4.1037 -4.7688 -1.6307 19 6 3.2651 -3.7381 -1.1670 20 6 3.7223 -2.4002 -1.1526 21 1 3.4029 -1.7288 -0.3692 22 6 4.5888 -1.9461 -2.1533 23 7 5.0533 -2.7825 -3.0454 24 14 5.0819 -0.1453 -2.2152 25 1 6.3096 0.0598 -1.4053 26 1 5.3460 0.2474 -3.6228 27 1 3.9822 0.6882 -1.6667 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1272 1.4436 -0.0777 33 1 1.6146 1.9783 -0.8485 34 1 1.7415 1.9334 0.9263 35 1 1.8521 0.9505 2.5987 36 1 0.3683 -0.0163 2.4152 37 1 1.5500 -0.3734 4.5334 38 1 0.1594 -2.1235 3.5264 39 1 1.4865 -2.7364 4.5428 40 1 2.8866 -3.1112 2.5706 41 1 1.3103 -3.9028 2.3079 42 1 0.5421 -5.5966 -0.3839 43 1 2.0184 -7.3835 -1.2081 44 1 4.2896 -6.8597 -1.9964 45 1 5.1012 -4.5417 -1.9768 46 1 5.6536 -2.4676 -3.7393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601343100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:07 Heat of formation + Delta-G solvation = -3.062069 kcal Electronic energy + Delta-G solvation = -30482.208583 eV Core-core repulsion = 26693.344798 eV Total energy + Delta-G solvation = -3788.863785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.17272 -37.59488 -36.83501 -35.36824 -34.15501 -33.84409 -32.92954 -30.24242 -29.57405 -29.46092 -26.87672 -25.58497 -25.21220 -23.92386 -21.64672 -21.14231 -20.87074 -19.67847 -18.14757 -17.65393 -16.74283 -16.27425 -15.71971 -15.39332 -15.30541 -14.92444 -14.55146 -14.31630 -14.15901 -13.83544 -13.43082 -13.35161 -12.90674 -12.81250 -12.68965 -12.60265 -12.19034 -11.90362 -11.73417 -11.54781 -11.47251 -11.32443 -11.22987 -11.14834 -10.94686 -10.77961 -10.63082 -10.50084 -10.37129 -10.26699 -10.02958 -9.93251 -9.45324 -9.18765 -8.76028 -8.64004 -8.08044 -8.01408 -7.52156 -6.91167 -4.77383 1.46468 2.31981 2.74933 3.00353 3.03852 3.14985 3.78108 3.82071 4.29241 4.46155 4.65539 4.99636 5.16705 5.20866 5.29580 5.41620 5.44325 5.52816 5.54827 5.68652 5.72375 5.81328 5.85882 6.02231 6.06010 6.12085 6.17322 6.22768 6.24488 6.29440 6.37825 6.38104 6.57072 6.61908 6.76916 6.84926 6.97447 7.03936 7.08137 7.24093 7.34050 7.38390 7.48698 7.52513 7.72510 7.80619 7.91595 8.31818 8.55564 8.67112 9.97157 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.007877 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.872840 B = 3553.803711 C = 5027.317557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.152 4.152 3 C -0.146 4.146 4 C 0.172 3.828 5 H 0.082 0.918 6 C 0.044 3.956 7 N -0.687 5.687 8 C 0.047 3.953 9 C 0.133 3.867 10 N -0.994 5.994 11 S 2.693 3.307 12 O -1.002 7.002 13 O -0.949 6.949 14 C -0.770 4.770 15 C -0.012 4.012 16 C -0.243 4.243 17 C -0.080 4.080 18 C -0.155 4.155 19 C 0.185 3.815 20 C -0.456 4.456 21 H 0.096 0.904 22 C 0.082 3.918 23 N -0.790 5.790 24 Si 0.900 3.100 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.234 1.234 28 H 0.034 0.966 29 H 0.060 0.940 30 H 0.028 0.972 31 H 0.175 0.825 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.338 0.662 38 H 0.035 0.965 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.136 0.864 46 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.251 5.237 8.520 10.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.172 4.172 3 C -0.203 4.203 4 C 0.065 3.935 5 H 0.099 0.901 6 C -0.086 4.086 7 N -0.318 5.318 8 C -0.084 4.084 9 C 0.007 3.993 10 N -0.831 5.831 11 S 2.795 3.205 12 O -0.992 6.992 13 O -0.939 6.939 14 C -0.865 4.865 15 C -0.032 4.032 16 C -0.264 4.264 17 C -0.099 4.099 18 C -0.175 4.175 19 C 0.181 3.819 20 C -0.485 4.485 21 H 0.114 0.886 22 C -0.138 4.138 23 N -0.414 5.414 24 Si 0.723 3.277 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.157 1.157 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.191 0.809 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.156 0.844 38 H 0.053 0.947 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.124 0.876 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.154 0.846 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.336 5.285 7.698 9.625 hybrid contribution -0.027 0.221 0.053 0.229 sum -2.363 5.506 7.751 9.797 Atomic orbital electron populations 1.22017 0.95702 0.99490 1.00252 1.22895 0.96403 0.96738 1.01213 1.21970 1.01293 0.96296 1.00792 1.21091 0.99359 0.78994 0.94030 0.90054 1.22526 0.98595 0.96822 0.90703 1.60194 1.63578 1.03421 1.04564 1.22262 0.96806 0.90509 0.98785 1.21302 1.01531 0.92788 0.83719 1.57756 1.79412 1.18061 1.27843 1.01586 0.72847 0.72940 0.73082 1.93433 1.45274 1.77911 1.82609 1.93557 1.86420 1.52939 1.61002 1.30053 1.12276 1.11841 1.32334 1.20269 0.97189 0.91746 0.94015 1.20537 0.96477 0.97282 1.12076 1.20981 0.95120 0.96555 0.97261 1.21828 1.01214 0.91029 1.03399 1.17065 0.87327 0.93131 0.84381 1.20015 1.23343 0.95580 1.09592 0.88613 1.25912 0.92965 1.00793 0.94129 1.69720 1.23579 1.36587 1.11553 0.86419 0.80531 0.81815 0.78900 1.19194 1.19993 1.15720 0.94764 0.92064 0.95318 0.80910 0.92388 0.92633 0.93690 0.90020 0.94249 0.84449 0.94686 0.90125 0.90755 0.90096 0.87607 0.88719 0.88764 0.84646 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.04 7.34 37.16 0.27 -1.76 16 2 C -0.15 -2.69 1.92 -90.62 -0.17 -2.86 16 3 C -0.15 -2.15 8.66 37.16 0.32 -1.83 16 4 C 0.17 2.89 1.65 -67.49 -0.11 2.78 16 5 H 0.08 1.41 7.38 -51.92 -0.38 1.03 16 6 C 0.04 0.61 5.28 -3.70 -0.02 0.59 16 7 N -0.69 -8.68 6.82 -113.50 -0.77 -9.45 16 8 C 0.05 0.62 6.70 -3.70 -0.02 0.60 16 9 C 0.13 2.13 6.62 -3.60 -0.02 2.11 16 10 N -0.99 -18.32 2.73 -106.19 -0.29 -18.61 16 11 S 2.69 58.93 2.96 -107.50 -0.32 58.61 16 12 O -1.00 -23.30 16.33 -57.17 -0.93 -24.23 16 13 O -0.95 -21.72 9.43 -57.17 -0.54 -22.26 16 14 C -0.77 -18.41 5.92 -38.87 -0.23 -18.64 16 15 C -0.01 -0.28 9.53 -39.66 -0.38 -0.66 16 16 C -0.24 -5.35 10.05 -39.29 -0.39 -5.74 16 17 C -0.08 -1.80 10.02 -39.66 -0.40 -2.20 16 18 C -0.15 -3.82 8.68 -38.87 -0.34 -4.16 16 19 C 0.19 4.65 5.56 -106.82 -0.59 4.06 16 20 C -0.46 -11.01 7.11 -37.74 -0.27 -11.28 16 21 H 0.10 2.14 3.12 -52.48 -0.16 1.97 16 22 C 0.08 1.92 5.43 -17.35 -0.09 1.82 16 23 N -0.79 -19.16 10.56 55.55 0.59 -18.57 16 24 Si 0.90 17.43 29.56 -169.99 -5.03 12.41 16 25 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 26 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 27 H -0.23 -4.26 5.17 56.52 0.29 -3.96 16 28 H 0.03 0.50 6.23 -51.93 -0.32 0.18 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.03 0.55 4.42 -33.40 -0.15 0.40 16 31 H 0.17 3.64 3.84 -56.86 -0.22 3.42 16 32 H 0.06 0.86 6.66 -51.93 -0.35 0.51 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.04 0.55 6.49 -51.93 -0.34 0.22 16 35 H 0.08 0.98 6.79 -51.93 -0.35 0.63 16 36 H 0.04 0.55 6.03 -51.93 -0.31 0.24 16 37 H 0.34 3.38 8.90 -39.29 -0.35 3.03 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.08 1.29 7.71 -51.93 -0.40 0.89 16 42 H 0.11 2.27 7.33 -52.49 -0.38 1.89 16 43 H 0.09 1.81 8.06 -52.48 -0.42 1.38 16 44 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 45 H 0.14 3.39 6.08 -52.49 -0.32 3.07 16 46 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -28.42 344.39 -10.80 -39.22 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -6.24 Total: 14.89 kcal Atomic # 6 Polarization: -34.72 SS G_CDS: -2.45 Total: -37.18 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.48 Total: -46.64 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -1.47 Total: -46.50 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.41 kcal Atomic # 16 Polarization: 58.93 SS G_CDS: -0.32 Total: 58.61 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.42 -10.80 -39.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601343100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.156 kcal (2) G-P(sol) polarization free energy of solvation -28.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds