Wall clock time and date at job start Sat Apr 11 2020 05:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46875 * 2 1 4 4 C 1.52998 * 109.47092 * 119.99753 * 2 1 3 5 5 H 1.09009 * 109.78433 * 183.34057 * 4 2 1 6 6 C 1.53239 * 109.63245 * 303.83079 * 4 2 1 7 7 N 1.46907 * 109.34053 * 173.53937 * 6 4 2 8 8 C 1.46898 * 111.26617 * 296.89460 * 7 6 4 9 9 C 1.53244 * 109.34226 * 63.10758 * 8 7 6 10 10 N 1.47082 * 109.62733 * 62.86272 * 4 2 1 11 11 S 1.65598 * 120.88065 * 9.07991 * 10 4 2 12 12 O 1.42106 * 106.40205 * 230.46632 * 11 10 4 13 13 O 1.42100 * 106.40223 * 3.38310 * 11 10 4 14 14 C 1.76196 * 107.21969 * 116.92659 * 11 10 4 15 15 C 1.37638 * 120.13043 * 116.01117 * 14 11 10 16 16 C 1.38613 * 120.24724 * 179.72409 * 15 14 11 17 17 C 1.38654 * 120.50592 * 0.55508 * 16 15 14 18 18 C 1.37604 * 120.24370 * 359.72299 * 17 16 15 19 19 C 1.40703 * 120.12650 * 296.28818 * 14 11 10 20 20 C 1.41391 * 120.24242 * 359.97438 * 19 14 11 21 21 H 1.08005 * 120.00034 * 34.24701 * 20 19 14 22 22 C 1.39945 * 119.99802 * 214.24598 * 20 19 14 23 23 N 1.30815 * 120.00377 * 354.99827 * 22 20 19 24 24 Si 1.86808 * 119.99820 * 174.99466 * 22 20 19 25 25 H 1.48501 * 109.46987 * 90.00264 * 24 22 20 26 26 H 1.48500 * 109.46963 * 210.00236 * 24 22 20 27 27 H 1.48495 * 109.47334 * 330.00499 * 24 22 20 28 28 H 1.09002 * 109.47173 * 299.99923 * 1 2 3 29 29 H 1.08999 * 109.47014 * 60.00043 * 1 2 3 30 30 H 1.09002 * 109.46649 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47104 * 240.00108 * 2 1 3 32 32 H 1.09003 * 109.46941 * 184.33866 * 3 2 1 33 33 H 1.08992 * 109.47356 * 304.33953 * 3 2 1 34 34 H 1.08998 * 109.46790 * 64.33986 * 3 2 1 35 35 H 1.08995 * 109.49133 * 293.49595 * 6 4 2 36 36 H 1.08995 * 109.49123 * 53.58012 * 6 4 2 37 37 H 1.00896 * 110.99610 * 172.74753 * 7 6 4 38 38 H 1.08991 * 109.49551 * 303.14370 * 8 7 6 39 39 H 1.09007 * 109.49037 * 183.06291 * 8 7 6 40 40 H 1.09004 * 109.62884 * 65.87548 * 9 8 7 41 41 H 1.08996 * 109.62849 * 186.45698 * 9 8 7 42 42 H 1.08001 * 119.87170 * 359.97438 * 15 14 11 43 43 H 1.08008 * 119.74486 * 180.30643 * 16 15 14 44 44 H 1.07993 * 119.88057 * 179.75187 * 17 16 15 45 45 H 1.08001 * 120.12789 * 179.97438 * 18 17 16 46 46 H 0.96996 * 120.00581 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1284 -0.6727 1.2848 6 6 1.4540 -0.0595 2.5010 7 7 1.8212 -0.8476 3.6852 8 6 1.2421 -2.1965 3.6279 9 6 1.8195 -2.9459 2.4223 10 7 1.6089 -2.1271 1.2187 11 16 0.9047 -2.7709 -0.1347 12 8 -0.2888 -3.4090 0.2988 13 8 0.9251 -1.7493 -1.1223 14 6 1.9682 -4.0487 -0.7185 15 6 1.5355 -5.3552 -0.7322 16 6 2.3681 -6.3616 -1.1963 17 6 3.6480 -6.0672 -1.6407 18 6 4.1037 -4.7688 -1.6307 19 6 3.2651 -3.7381 -1.1670 20 6 3.7223 -2.4002 -1.1526 21 1 3.4029 -1.7288 -0.3692 22 6 4.5888 -1.9461 -2.1533 23 7 5.0533 -2.7825 -3.0454 24 14 5.0819 -0.1453 -2.2152 25 1 6.3096 0.0598 -1.4053 26 1 5.3460 0.2474 -3.6228 27 1 3.9822 0.6882 -1.6667 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1272 1.4436 -0.0777 33 1 1.6146 1.9783 -0.8485 34 1 1.7415 1.9334 0.9263 35 1 1.8521 0.9505 2.5987 36 1 0.3683 -0.0163 2.4152 37 1 1.5500 -0.3734 4.5334 38 1 0.1594 -2.1235 3.5264 39 1 1.4865 -2.7364 4.5428 40 1 2.8866 -3.1112 2.5706 41 1 1.3103 -3.9028 2.3079 42 1 0.5421 -5.5966 -0.3839 43 1 2.0184 -7.3835 -1.2081 44 1 4.2896 -6.8597 -1.9964 45 1 5.1012 -4.5417 -1.9768 46 1 5.6536 -2.4676 -3.7393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601343100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:06 Heat of formation + Delta-G solvation = -22.257820 kcal Electronic energy + Delta-G solvation = -30483.040973 eV Core-core repulsion = 26693.344798 eV Total energy + Delta-G solvation = -3789.696175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.45864 -39.37830 -38.39428 -37.03735 -35.63821 -35.50974 -34.20872 -32.02360 -31.34831 -30.67936 -28.15222 -27.36616 -26.44569 -25.13369 -23.41427 -22.91654 -22.12414 -21.05364 -19.77604 -19.37734 -18.28218 -17.69662 -17.20284 -16.94279 -16.84689 -16.20667 -16.11315 -15.76807 -15.45182 -15.18641 -15.07515 -14.97118 -14.45280 -14.30467 -14.04542 -13.99303 -13.62273 -13.53802 -13.16611 -13.05760 -12.94909 -12.89758 -12.78348 -12.69962 -12.44935 -12.20665 -12.02028 -11.95827 -11.81408 -11.73659 -11.57997 -11.46646 -11.12694 -10.85117 -10.21918 -9.93857 -9.80548 -9.35163 -9.21792 -8.66679 -6.60074 -0.18289 0.51733 0.97516 1.40226 1.49625 1.59638 2.20913 2.25223 2.69185 2.98684 3.27579 3.45302 3.69480 3.83454 3.99218 4.07737 4.23242 4.28118 4.30232 4.37202 4.39528 4.49503 4.54491 4.66647 4.71502 4.80304 4.85988 4.87065 4.95754 4.99658 5.03166 5.08229 5.11613 5.19077 5.29343 5.32519 5.40612 5.53201 5.53664 5.68745 5.84332 5.92091 5.97066 5.99318 6.07033 6.12257 6.51197 6.60990 6.74748 6.85994 8.24031 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.007877 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.872840 B = 3553.803711 C = 5027.317557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.157 4.157 3 C -0.143 4.143 4 C 0.166 3.834 5 H 0.074 0.926 6 C 0.050 3.950 7 N -0.687 5.687 8 C 0.054 3.946 9 C 0.121 3.879 10 N -0.990 5.990 11 S 2.705 3.295 12 O -1.022 7.022 13 O -0.964 6.964 14 C -0.791 4.791 15 C -0.029 4.029 16 C -0.246 4.246 17 C -0.081 4.081 18 C -0.184 4.184 19 C 0.159 3.841 20 C -0.473 4.473 21 H 0.108 0.892 22 C 0.040 3.960 23 N -0.821 5.821 24 Si 0.953 3.047 25 H -0.256 1.256 26 H -0.276 1.276 27 H -0.217 1.217 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.001 0.999 31 H 0.139 0.861 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.039 0.961 37 H 0.359 0.641 38 H 0.031 0.969 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.116 0.884 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.400 6.979 10.516 12.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.178 4.178 3 C -0.201 4.201 4 C 0.060 3.940 5 H 0.092 0.908 6 C -0.080 4.080 7 N -0.320 5.320 8 C -0.077 4.077 9 C -0.004 4.004 10 N -0.829 5.829 11 S 2.806 3.194 12 O -1.012 7.012 13 O -0.954 6.954 14 C -0.884 4.884 15 C -0.048 4.048 16 C -0.266 4.266 17 C -0.099 4.099 18 C -0.204 4.204 19 C 0.155 3.845 20 C -0.502 4.502 21 H 0.125 0.875 22 C -0.176 4.176 23 N -0.447 5.447 24 Si 0.772 3.228 25 H -0.180 1.180 26 H -0.201 1.201 27 H -0.139 1.139 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.020 0.980 31 H 0.156 0.844 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.126 0.874 36 H 0.058 0.942 37 H 0.179 0.821 38 H 0.049 0.951 39 H 0.128 0.872 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.134 0.866 43 H 0.144 0.856 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.482 6.996 9.703 12.217 hybrid contribution -0.001 -0.399 -0.554 0.683 sum -2.484 6.597 9.149 11.550 Atomic orbital electron populations 1.22010 0.95690 0.98152 1.01680 1.22731 0.96513 0.98465 1.00060 1.21947 1.01150 0.94342 1.02644 1.21256 0.99108 0.78065 0.95552 0.90797 1.22464 0.98428 0.97677 0.89480 1.60125 1.63546 1.03191 1.05133 1.22220 0.96271 0.90909 0.98315 1.21554 1.01737 0.93020 0.84109 1.57535 1.79219 1.18984 1.27192 1.01240 0.72401 0.72221 0.73521 1.93393 1.46221 1.78493 1.83108 1.93604 1.86674 1.52671 1.62443 1.30449 1.12334 1.13091 1.32492 1.20580 0.97942 0.91995 0.94303 1.20914 0.96077 0.98671 1.10910 1.21305 0.95789 0.96499 0.96337 1.21894 1.01106 0.92245 1.05162 1.17396 0.88028 0.93934 0.85169 1.20312 1.23898 0.95645 1.10333 0.87467 1.26791 0.92605 1.04723 0.93526 1.69791 1.24265 1.38372 1.12225 0.85652 0.81005 0.77212 0.78953 1.18028 1.20131 1.13935 0.91907 0.92026 0.97971 0.84399 0.92457 0.92235 0.90675 0.87408 0.94247 0.82118 0.95083 0.87175 0.90884 0.90712 0.86625 0.85557 0.86006 0.85820 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.95 7.34 71.98 0.53 -3.42 16 2 C -0.16 -5.33 1.92 -10.79 -0.02 -5.35 16 3 C -0.14 -3.80 8.66 71.98 0.62 -3.17 16 4 C 0.17 5.32 1.65 44.96 0.07 5.40 16 5 H 0.07 2.47 7.38 -2.38 -0.02 2.45 16 6 C 0.05 1.21 5.28 86.38 0.46 1.67 16 7 N -0.69 -14.96 6.82 -513.02 -3.50 -18.46 16 8 C 0.05 1.28 6.70 86.39 0.58 1.85 16 9 C 0.12 3.80 6.62 86.35 0.57 4.38 16 10 N -0.99 -36.10 2.73 -489.87 -1.34 -37.44 16 11 S 2.70 120.57 2.96 -56.49 -0.17 120.40 16 12 O -1.02 -48.33 16.33 -128.00 -2.09 -50.42 16 13 O -0.96 -45.20 9.43 -128.00 -1.21 -46.41 16 14 C -0.79 -38.84 5.92 22.73 0.13 -38.71 16 15 C -0.03 -1.33 9.53 22.22 0.21 -1.12 16 16 C -0.25 -10.70 10.05 22.46 0.23 -10.48 16 17 C -0.08 -3.64 10.02 22.22 0.22 -3.42 16 18 C -0.18 -9.38 8.68 22.73 0.20 -9.18 16 19 C 0.16 8.25 5.56 -21.29 -0.12 8.13 16 20 C -0.47 -23.45 7.11 23.46 0.17 -23.28 16 21 H 0.11 4.88 3.12 -2.91 -0.01 4.87 16 22 C 0.04 1.90 5.43 85.26 0.46 2.36 16 23 N -0.82 -41.12 10.56 21.83 0.23 -40.89 16 24 Si 0.95 35.54 29.56 68.60 2.03 37.57 16 25 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 26 H -0.28 -10.28 7.11 99.48 0.71 -9.57 16 27 H -0.22 -7.41 5.17 99.48 0.51 -6.89 16 28 H 0.06 1.69 6.23 -2.39 -0.01 1.68 16 29 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.00 0.06 4.42 -14.17 -0.06 -0.01 16 31 H 0.14 5.81 3.84 -80.35 -0.31 5.50 16 32 H 0.06 1.52 6.66 -2.39 -0.02 1.50 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.52 6.49 -2.39 -0.02 1.51 16 35 H 0.11 2.06 6.79 -2.39 -0.02 2.05 16 36 H 0.04 0.97 6.03 -2.39 -0.01 0.95 16 37 H 0.36 5.61 8.90 -89.70 -0.80 4.81 16 38 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 41 H 0.07 2.39 7.71 -2.39 -0.02 2.37 16 42 H 0.12 5.02 7.33 -2.91 -0.02 5.00 16 43 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 44 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 45 H 0.12 6.48 6.08 -2.91 -0.02 6.46 16 46 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 Total: -1.00 -63.46 344.39 -2.04 -65.50 By element: Atomic # 1 Polarization: 44.79 SS G_CDS: -0.32 Total: 44.48 kcal Atomic # 6 Polarization: -78.65 SS G_CDS: 4.32 Total: -74.33 kcal Atomic # 7 Polarization: -92.18 SS G_CDS: -4.60 Total: -96.79 kcal Atomic # 8 Polarization: -93.53 SS G_CDS: -3.30 Total: -96.83 kcal Atomic # 14 Polarization: 35.54 SS G_CDS: 2.03 Total: 37.57 kcal Atomic # 16 Polarization: 120.57 SS G_CDS: -0.17 Total: 120.40 kcal Total: -63.46 -2.04 -65.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601343100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.245 kcal (2) G-P(sol) polarization free energy of solvation -63.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds