Wall clock time and date at job start Sat Apr 11 2020 05:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47137 * 2 1 4 4 C 1.53007 * 109.47221 * 185.13132 * 3 2 1 5 5 H 1.08994 * 109.78634 * 53.57228 * 4 3 2 6 6 C 1.52789 * 109.55338 * 293.33848 * 4 3 2 7 7 N 1.46898 * 109.42082 * 186.60589 * 6 4 3 8 8 C 1.46900 * 111.26748 * 62.96948 * 7 6 4 9 9 C 1.53242 * 109.34055 * 296.89419 * 8 7 6 10 10 N 1.47079 * 108.51819 * 53.83050 * 9 8 7 11 11 S 1.65599 * 120.88031 * 128.81961 * 10 9 8 12 12 O 1.42091 * 106.40527 * 351.42619 * 11 10 9 13 13 O 1.42097 * 106.40181 * 218.50205 * 11 10 9 14 14 C 1.76206 * 107.21714 * 104.96723 * 11 10 9 15 15 C 1.37636 * 120.13363 * 114.73938 * 14 11 10 16 16 C 1.38610 * 120.25025 * 180.27270 * 15 14 11 17 17 C 1.38657 * 120.50192 * 359.76068 * 16 15 14 18 18 C 1.37595 * 120.24624 * 359.95650 * 17 16 15 19 19 C 1.40704 * 120.12610 * 294.47318 * 14 11 10 20 20 C 1.41400 * 120.24332 * 359.97438 * 19 14 11 21 21 H 1.08000 * 119.99971 * 328.63464 * 20 19 14 22 22 C 1.39942 * 119.99972 * 148.62642 * 20 19 14 23 23 N 1.30829 * 119.99940 * 351.66307 * 22 20 19 24 24 Si 1.86799 * 120.00200 * 171.65193 * 22 20 19 25 25 H 1.48496 * 109.47500 * 180.02562 * 24 22 20 26 26 H 1.48501 * 109.47213 * 300.01047 * 24 22 20 27 27 H 1.48503 * 109.46640 * 60.00455 * 24 22 20 28 28 H 1.09000 * 109.46916 * 60.00556 * 1 2 3 29 29 H 1.08999 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46952 * 300.00148 * 1 2 3 31 31 H 1.08999 * 109.47451 * 239.99988 * 2 1 3 32 32 H 1.09003 * 109.47006 * 119.99966 * 2 1 3 33 33 H 1.09002 * 109.47332 * 65.12929 * 3 2 1 34 34 H 1.08994 * 109.47386 * 305.12727 * 3 2 1 35 35 H 1.09001 * 109.55942 * 66.55599 * 6 4 3 36 36 H 1.08994 * 109.34069 * 306.52555 * 6 4 3 37 37 H 1.00895 * 111.00604 * 298.82352 * 7 6 4 38 38 H 1.08998 * 109.49485 * 176.93001 * 8 7 6 39 39 H 1.09001 * 109.51354 * 56.86794 * 8 7 6 40 40 H 1.08997 * 109.62706 * 294.12206 * 9 8 7 41 41 H 1.08999 * 109.78603 * 173.63192 * 9 8 7 42 42 H 1.08008 * 119.87246 * 0.02562 * 15 14 11 43 43 H 1.08000 * 119.74480 * 179.73628 * 16 15 14 44 44 H 1.07996 * 119.87410 * 179.97438 * 17 16 15 45 45 H 1.07999 * 120.12490 * 180.02562 * 18 17 16 46 46 H 0.97000 * 119.99742 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5646 1.4444 -0.1290 5 1 3.8619 0.8607 -1.0002 6 6 4.1849 0.8355 1.1275 7 7 5.6455 0.9819 1.0713 8 6 6.0393 2.3971 1.0647 9 6 5.4954 3.0693 -0.2005 10 7 4.0466 2.8266 -0.2724 11 16 2.9856 4.0772 -0.5020 12 8 3.7450 5.2730 -0.3915 13 8 1.8537 3.7974 0.3102 14 6 2.4324 3.9917 -2.1728 15 6 1.1117 3.7212 -2.4504 16 6 0.6751 3.6478 -3.7638 17 6 1.5600 3.8503 -4.8120 18 6 2.8835 4.1277 -4.5579 19 6 3.3380 4.2051 -3.2283 20 6 4.6958 4.4898 -2.9552 21 1 4.9649 5.0280 -2.0584 22 6 5.6910 4.0740 -3.8469 23 7 5.3868 3.2846 -4.8449 24 14 7.4536 4.6464 -3.6125 25 1 8.3075 4.0706 -4.6823 26 1 7.5061 6.1288 -3.6819 27 1 7.9483 4.1951 -2.2870 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7536 1.9291 0.9324 34 1 1.6037 1.9821 -0.8404 35 1 3.9273 -0.2220 1.1860 36 1 3.8010 1.3529 2.0067 37 1 6.0272 0.4967 0.2733 38 1 7.1266 2.4722 1.0777 39 1 5.6300 2.8931 1.9448 40 1 5.9818 2.6447 -1.0786 41 1 5.6854 4.1418 -0.1592 42 1 0.4138 3.5616 -1.6417 43 1 -0.3621 3.4308 -3.9724 44 1 1.2089 3.7903 -5.8315 45 1 3.5709 4.2855 -5.3758 46 1 6.0765 2.9968 -5.4632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601344531.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:12 Heat of formation + Delta-G solvation = -56.066947 kcal Electronic energy + Delta-G solvation = -29969.198937 eV Core-core repulsion = 26178.036688 eV Total energy + Delta-G solvation = -3791.162249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.90048 -37.63907 -36.69456 -34.96054 -34.66309 -33.93477 -32.80187 -30.81183 -30.25894 -29.62339 -26.66318 -25.59474 -24.55035 -22.78878 -21.67296 -21.27852 -20.93189 -20.67968 -18.19234 -17.73553 -16.89149 -16.13378 -15.59564 -15.43329 -15.39062 -14.74528 -14.45824 -14.22894 -14.08112 -13.90982 -13.66133 -13.33677 -13.23047 -12.97689 -12.78209 -12.41383 -12.03327 -11.94528 -11.65616 -11.50681 -11.34667 -11.30534 -11.24311 -11.22766 -11.12980 -11.06633 -10.84444 -10.64444 -10.55270 -10.47932 -10.25644 -10.00116 -9.92668 -9.50261 -9.31263 -8.89402 -8.10811 -7.81347 -7.61239 -7.06366 -4.82820 1.45249 2.29539 2.68231 2.91387 2.95254 3.05206 3.71500 3.74301 4.35300 4.43471 4.67384 4.95090 5.07231 5.19420 5.28614 5.30977 5.34348 5.40506 5.47624 5.57672 5.74301 5.78841 5.84958 5.98184 5.98568 6.04442 6.07224 6.10762 6.18746 6.22729 6.34565 6.35976 6.38937 6.55778 6.57196 6.74305 6.82386 6.92521 7.00916 7.08927 7.22006 7.30389 7.46721 7.48472 7.66400 7.76232 7.90313 8.31584 8.48683 8.61567 9.86417 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010087 B = 0.007204 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.054078 B = 3885.966792 C = 5342.203028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.152 4.152 4 C 0.127 3.873 5 H 0.070 0.930 6 C 0.051 3.949 7 N -0.684 5.684 8 C 0.043 3.957 9 C 0.088 3.912 10 N -0.988 5.988 11 S 2.705 3.295 12 O -0.978 6.978 13 O -0.991 6.991 14 C -0.773 4.773 15 C -0.006 4.006 16 C -0.245 4.245 17 C -0.078 4.078 18 C -0.154 4.154 19 C 0.192 3.808 20 C -0.474 4.474 21 H 0.111 0.889 22 C 0.080 3.920 23 N -0.783 5.783 24 Si 0.908 3.092 25 H -0.276 1.276 26 H -0.258 1.258 27 H -0.256 1.256 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.340 0.660 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.124 0.876 46 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.366 -6.155 5.712 8.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.191 4.191 4 C 0.019 3.981 5 H 0.088 0.912 6 C -0.080 4.080 7 N -0.312 5.312 8 C -0.088 4.088 9 C -0.039 4.039 10 N -0.824 5.824 11 S 2.806 3.194 12 O -0.969 6.969 13 O -0.982 6.982 14 C -0.868 4.868 15 C -0.026 4.026 16 C -0.265 4.265 17 C -0.097 4.097 18 C -0.174 4.174 19 C 0.188 3.812 20 C -0.502 4.502 21 H 0.129 0.871 22 C -0.140 4.140 23 N -0.407 5.407 24 Si 0.731 3.269 25 H -0.201 1.201 26 H -0.182 1.182 27 H -0.180 1.180 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.157 0.843 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.117 0.883 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.142 0.858 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.363 -5.731 6.877 8.959 hybrid contribution 0.437 0.136 -2.072 2.122 sum 0.800 -5.595 4.805 7.418 Atomic orbital electron populations 1.21736 0.95827 1.00919 1.02288 1.21475 0.96091 0.96411 1.01565 1.22536 0.92766 0.97721 1.06091 1.21550 0.94743 0.83117 0.98730 0.91236 1.22373 0.87493 1.00853 0.97284 1.60733 1.10357 1.12382 1.47721 1.22413 1.00317 0.88453 0.97653 1.22153 0.80296 1.02998 0.98495 1.57647 1.16815 1.19638 1.88333 1.00977 0.71937 0.71960 0.74565 1.93438 1.71439 1.44250 1.87732 1.93482 1.51496 1.84875 1.68330 1.29889 1.03171 1.32761 1.20960 1.20226 0.93249 0.92869 0.96211 1.20504 0.98198 1.14884 0.92956 1.20918 0.94348 0.97473 0.96981 1.21549 0.94004 1.04282 0.97583 1.17024 0.91150 0.82700 0.90347 1.20397 0.90639 1.30975 1.08233 0.87112 1.25983 1.02184 0.92512 0.93326 1.69780 1.36436 1.23152 1.11310 0.86343 0.80163 0.80835 0.79585 1.20065 1.18204 1.17982 0.92533 0.93213 0.92605 0.92232 0.92074 0.87928 0.90327 0.89935 0.90546 0.84279 0.89936 0.90762 0.91130 0.88294 0.87420 0.88731 0.88839 0.85793 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.12 -1.52 5.60 -26.73 -0.15 -1.67 16 3 C -0.15 -2.46 3.07 -26.73 -0.08 -2.55 16 4 C 0.13 2.01 3.08 -67.72 -0.21 1.81 16 5 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 6 C 0.05 0.68 5.60 -3.93 -0.02 0.66 16 7 N -0.68 -8.95 6.85 -113.76 -0.78 -9.73 16 8 C 0.04 0.59 6.70 -3.70 -0.02 0.57 16 9 C 0.09 1.49 5.41 -3.60 -0.02 1.47 16 10 N -0.99 -18.19 3.27 -106.44 -0.35 -18.54 16 11 S 2.71 58.76 4.53 -107.50 -0.49 58.27 16 12 O -0.98 -23.52 14.04 -57.18 -0.80 -24.33 16 13 O -0.99 -21.47 12.66 -57.18 -0.72 -22.19 16 14 C -0.77 -18.23 5.52 -38.87 -0.21 -18.44 16 15 C -0.01 -0.13 8.19 -39.66 -0.32 -0.45 16 16 C -0.25 -5.28 10.05 -39.29 -0.39 -5.68 16 17 C -0.08 -1.74 10.02 -39.66 -0.40 -2.14 16 18 C -0.15 -3.79 8.64 -38.88 -0.34 -4.12 16 19 C 0.19 4.83 5.53 -106.82 -0.59 4.24 16 20 C -0.47 -11.59 7.28 -37.74 -0.27 -11.86 16 21 H 0.11 2.73 4.60 -52.49 -0.24 2.49 16 22 C 0.08 1.83 5.28 -17.34 -0.09 1.74 16 23 N -0.78 -18.24 10.88 55.55 0.60 -17.63 16 24 Si 0.91 17.26 29.57 -169.99 -5.03 12.23 16 25 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 26 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 27 H -0.26 -4.60 7.11 56.52 0.40 -4.19 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.68 7.03 -51.93 -0.37 0.31 16 33 H 0.10 1.75 6.43 -51.93 -0.33 1.42 16 34 H 0.08 1.45 4.29 -51.93 -0.22 1.23 16 35 H 0.08 0.94 7.07 -51.93 -0.37 0.57 16 36 H 0.08 1.06 8.12 -51.93 -0.42 0.64 16 37 H 0.34 4.16 8.84 -39.29 -0.35 3.82 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.10 1.80 6.20 -51.93 -0.32 1.47 16 42 H 0.11 2.21 6.94 -52.48 -0.36 1.85 16 43 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 45 H 0.12 3.08 6.32 -52.49 -0.33 2.75 16 46 H 0.29 6.08 8.30 -40.82 -0.34 5.74 16 LS Contribution 358.39 15.07 5.40 5.40 Total: -1.00 -27.56 358.39 -11.60 -39.17 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -6.68 Total: 15.27 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: -2.76 Total: -37.92 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: -0.52 Total: -45.90 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: -1.53 Total: -46.52 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Atomic # 16 Polarization: 58.76 SS G_CDS: -0.49 Total: 58.27 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.56 -11.60 -39.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601344531.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.900 kcal (2) G-P(sol) polarization free energy of solvation -27.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds