Wall clock time and date at job start Sat Apr 11 2020 05:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.51792 * 2 1 4 4 C 1.53236 * 109.49518 * 120.06936 * 2 1 3 5 5 N 1.47081 * 108.52467 * 173.78725 * 4 2 1 6 6 S 1.65596 * 120.88243 * 128.83556 * 5 4 2 7 7 O 1.42103 * 106.40162 * 29.55419 * 6 5 4 8 8 O 1.42101 * 106.40303 * 162.47396 * 6 5 4 9 9 C 1.76200 * 107.21707 * 276.01444 * 6 5 4 10 10 C 1.37634 * 120.12830 * 114.56613 * 9 6 5 11 11 C 1.38616 * 120.25012 * 179.97438 * 10 9 6 12 12 C 1.38661 * 120.49836 * 0.02623 * 11 10 9 13 13 C 1.37591 * 120.24789 * 0.02562 * 12 11 10 14 14 C 1.40696 * 120.12770 * 294.28739 * 9 6 5 15 15 C 1.41404 * 120.24332 * 0.02562 * 14 9 6 16 16 H 1.07996 * 119.99469 * 331.36304 * 15 14 9 17 17 C 1.39940 * 119.99830 * 151.36456 * 15 14 9 18 18 N 1.30824 * 120.00230 * 345.82022 * 17 15 14 19 19 Si 1.86801 * 119.99596 * 165.82405 * 17 15 14 20 20 H 1.48492 * 109.47337 * 59.99796 * 19 17 15 21 21 H 1.48504 * 109.47034 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47083 * 299.99674 * 19 17 15 23 23 C 1.47080 * 118.23609 * 308.81596 * 5 4 2 24 24 H 1.09000 * 109.62898 * 170.89462 * 23 5 4 25 25 C 1.53001 * 109.78900 * 291.37936 * 23 5 4 26 26 C 1.53242 * 108.52202 * 51.17870 * 23 5 4 27 27 N 1.46891 * 109.34130 * 306.17363 * 26 23 5 28 28 C 1.46908 * 111.00003 * 187.24844 * 27 26 23 29 29 H 1.08993 * 109.47406 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46703 * 300.06567 * 1 2 3 31 31 H 1.08993 * 109.47123 * 60.06611 * 1 2 3 32 32 H 1.09008 * 109.63191 * 54.07229 * 4 2 1 33 33 H 1.09001 * 109.78762 * 293.59517 * 4 2 1 34 34 H 1.08002 * 119.87619 * 0.02562 * 10 9 6 35 35 H 1.08004 * 119.75074 * 179.97438 * 11 10 9 36 36 H 1.07998 * 119.87249 * 179.97438 * 12 11 10 37 37 H 1.08006 * 120.12842 * 179.97438 * 13 12 11 38 38 H 0.97000 * 119.99676 * 180.02562 * 18 17 15 39 39 H 1.08994 * 109.47311 * 179.12694 * 25 23 5 40 40 H 1.09002 * 109.46825 * 299.12775 * 25 23 5 41 41 H 1.09008 * 109.47360 * 59.12339 * 25 23 5 42 42 H 1.08998 * 109.49091 * 186.20864 * 26 23 5 43 43 H 1.09002 * 109.50822 * 66.14345 * 26 23 5 44 44 H 1.09002 * 109.46334 * 56.04714 * 28 27 26 45 45 H 1.08993 * 109.46870 * 176.04220 * 28 27 26 46 46 H 1.08997 * 109.46836 * 296.04864 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0414 -0.7238 1.2501 5 7 3.5043 -0.8433 1.1553 6 16 4.4793 -0.3596 2.4033 7 8 3.7256 -0.5400 3.5944 8 8 5.7440 -0.9692 2.1841 9 6 4.7268 1.3763 2.2292 10 6 4.2330 2.2430 3.1775 11 6 4.4267 3.6090 3.0433 12 6 5.1181 4.1181 1.9545 13 6 5.6195 3.2704 0.9938 14 6 5.4349 1.8812 1.1233 15 6 5.9513 0.9999 0.1455 16 1 6.2280 -0.0076 0.4190 17 6 6.1039 1.4332 -1.1763 18 7 5.5238 2.5363 -1.5742 19 14 7.1358 0.4365 -2.3727 20 1 6.5611 -0.9262 -2.5059 21 1 7.1385 1.1039 -3.6993 22 1 8.5276 0.3393 -1.8641 23 6 4.0782 -1.4042 -0.0773 24 1 5.1611 -1.2807 -0.0662 25 6 3.7316 -2.8909 -0.1802 26 6 3.4866 -0.6537 -1.2752 27 7 2.0202 -0.6939 -1.1985 28 6 1.4139 -0.1358 -2.4147 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8895 31 1 -0.3633 0.5128 -0.8905 32 1 1.5957 -1.7170 1.3063 33 1 1.7776 -0.1533 2.1407 34 1 3.6934 1.8574 4.0299 35 1 4.0355 4.2819 3.7921 36 1 5.2628 5.1842 1.8599 37 1 6.1574 3.6691 0.1463 38 1 5.6293 2.8364 -2.4906 39 1 4.1460 -3.2976 -1.1026 40 1 4.1535 -3.4222 0.6730 41 1 2.6483 -3.0121 -0.1841 42 1 3.8156 -1.1277 -2.1999 43 1 3.8234 0.3828 -1.2579 44 1 1.7894 -0.6717 -3.2865 45 1 0.3304 -0.2418 -2.3620 46 1 1.6723 0.9198 -2.4980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601383006.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:55 Heat of formation + Delta-G solvation = -44.406550 kcal Electronic energy + Delta-G solvation = -30422.286543 eV Core-core repulsion = 26631.629927 eV Total energy + Delta-G solvation = -3790.656616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.05888 -37.62605 -36.39613 -34.93330 -34.64401 -33.96535 -32.56126 -30.28176 -29.59857 -29.20141 -27.00529 -25.82981 -25.33105 -23.38148 -21.69045 -21.34674 -21.18053 -19.29397 -17.96593 -17.59079 -17.20626 -16.03020 -15.67742 -15.45654 -15.06981 -14.65417 -14.46409 -14.22392 -14.14469 -13.46094 -13.37360 -13.18541 -13.01356 -12.80198 -12.57173 -12.06959 -12.02428 -11.90387 -11.68008 -11.60088 -11.50259 -11.31157 -11.27666 -11.23795 -11.20067 -11.14976 -10.94673 -10.67946 -10.61676 -10.53707 -10.43385 -9.97880 -9.80198 -9.46712 -9.24221 -8.46228 -8.05331 -7.81363 -7.65020 -7.13449 -4.83080 1.48597 2.30732 2.67708 2.89361 2.93704 3.05468 3.68651 3.82062 4.25736 4.31813 4.74046 5.06146 5.13677 5.25301 5.32898 5.46389 5.60346 5.63266 5.68741 5.72324 5.80217 5.86379 5.94843 5.99672 6.05185 6.06001 6.08000 6.18492 6.19692 6.23744 6.30178 6.37623 6.48077 6.50677 6.66500 6.75878 6.85313 6.91805 7.02587 7.27224 7.30927 7.43764 7.44631 7.48376 7.64019 7.76696 7.89577 8.29016 8.44723 8.60790 9.79556 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009071 B = 0.008140 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.182964 B = 3439.079799 C = 4430.470722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 H 0.053 0.947 4 C 0.141 3.859 5 N -0.989 5.989 6 S 2.702 3.298 7 O -0.996 6.996 8 O -0.973 6.973 9 C -0.776 4.776 10 C -0.003 4.003 11 C -0.248 4.248 12 C -0.077 4.077 13 C -0.158 4.158 14 C 0.194 3.806 15 C -0.475 4.475 16 H 0.114 0.886 17 C 0.086 3.914 18 N -0.775 5.775 19 Si 0.895 3.105 20 H -0.252 1.252 21 H -0.275 1.275 22 H -0.256 1.256 23 C 0.156 3.844 24 H 0.111 0.889 25 C -0.154 4.154 26 C 0.040 3.960 27 N -0.532 5.532 28 C 0.024 3.976 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.287 0.713 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.459 -3.796 -3.718 8.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.043 4.043 3 H 0.071 0.929 4 C 0.014 3.986 5 N -0.824 5.824 6 S 2.802 3.198 7 O -0.986 6.986 8 O -0.964 6.964 9 C -0.871 4.871 10 C -0.023 4.023 11 C -0.269 4.269 12 C -0.096 4.096 13 C -0.178 4.178 14 C 0.190 3.810 15 C -0.503 4.503 16 H 0.132 0.868 17 C -0.135 4.135 18 N -0.399 5.399 19 Si 0.717 3.283 20 H -0.176 1.176 21 H -0.199 1.199 22 H -0.180 1.180 23 C 0.050 3.950 24 H 0.128 0.872 25 C -0.213 4.213 26 C -0.089 4.089 27 N -0.257 5.257 28 C -0.125 4.125 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.140 0.860 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.299 -4.732 -3.229 8.515 hybrid contribution 0.578 1.534 -1.110 1.980 sum -5.721 -3.198 -4.339 7.860 Atomic orbital electron populations 1.21878 0.94476 1.02258 1.01749 1.21973 0.94714 0.96748 0.90913 0.92871 1.21324 0.79802 1.00545 0.96890 1.57779 1.15267 1.77223 1.32130 1.01063 0.72492 0.74779 0.71514 1.93437 1.72689 1.87198 1.45304 1.93463 1.40698 1.76948 1.85264 1.29919 1.23872 1.22300 1.11026 1.20243 0.93626 0.93333 0.95107 1.20493 1.10768 0.94516 1.01099 1.20896 0.96618 0.97711 0.94333 1.21472 1.03534 0.93702 0.99110 1.16968 0.83831 0.92614 0.87626 1.20447 1.35834 1.01438 0.92575 0.86822 1.25924 0.93284 0.94841 0.99482 1.69805 1.31574 1.19509 1.18977 0.86536 0.81930 0.81167 0.78629 1.17566 1.19934 1.18008 1.21111 0.98952 0.92112 0.82785 0.87159 1.22052 1.02672 0.95559 1.00973 1.22599 0.86610 1.02019 0.97690 1.61958 1.07234 1.54828 1.01729 1.22374 0.99835 0.97690 0.92580 0.91884 0.92153 0.92437 0.91185 0.89862 0.87522 0.88761 0.88912 0.86036 0.90201 0.92386 0.93163 0.91422 0.91140 0.90841 0.92041 0.91448 0.95695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.72 37.16 0.32 -1.45 16 2 C 0.07 1.03 2.60 -67.59 -0.18 0.86 16 3 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.14 2.32 5.40 -3.60 -0.02 2.30 16 5 N -0.99 -18.79 3.01 -106.19 -0.32 -19.11 16 6 S 2.70 59.84 5.09 -107.50 -0.55 59.29 16 7 O -1.00 -22.84 15.96 -57.17 -0.91 -23.75 16 8 O -0.97 -23.43 14.55 -57.17 -0.83 -24.26 16 9 C -0.78 -18.36 5.97 -38.87 -0.23 -18.59 16 10 C 0.00 -0.07 9.53 -39.66 -0.38 -0.45 16 11 C -0.25 -5.39 10.05 -39.29 -0.39 -5.78 16 12 C -0.08 -1.70 10.02 -39.66 -0.40 -2.09 16 13 C -0.16 -3.82 8.66 -38.88 -0.34 -4.16 16 14 C 0.19 4.78 5.54 -106.82 -0.59 4.19 16 15 C -0.48 -11.23 5.93 -37.74 -0.22 -11.45 16 16 H 0.11 2.73 3.70 -52.49 -0.19 2.53 16 17 C 0.09 1.88 3.82 -17.34 -0.07 1.82 16 18 N -0.78 -17.27 11.00 55.55 0.61 -16.66 16 19 Si 0.89 16.82 29.58 -169.99 -5.03 11.79 16 20 H -0.25 -4.49 7.11 56.52 0.40 -4.09 16 21 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 22 H -0.26 -4.95 7.11 56.52 0.40 -4.54 16 23 C 0.16 2.83 2.25 -67.49 -0.15 2.68 16 24 H 0.11 2.20 4.72 -51.93 -0.25 1.96 16 25 C -0.15 -2.36 9.22 37.16 0.34 -2.02 16 26 C 0.04 0.69 4.88 -3.70 -0.02 0.67 16 27 N -0.53 -8.15 4.24 -234.59 -0.99 -9.15 16 28 C 0.02 0.31 9.02 60.07 0.54 0.86 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.06 0.65 6.31 -51.93 -0.33 0.33 16 32 H 0.07 1.04 7.62 -51.92 -0.40 0.64 16 33 H 0.08 1.36 7.39 -51.93 -0.38 0.98 16 34 H 0.11 2.24 7.32 -52.49 -0.38 1.86 16 35 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 36 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 37 H 0.12 2.95 6.32 -52.48 -0.33 2.62 16 38 H 0.29 5.86 8.30 -40.82 -0.34 5.53 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.99 7.09 -51.92 -0.37 0.63 16 42 H 0.07 1.13 8.07 -51.93 -0.42 0.71 16 43 H 0.07 1.47 5.87 -51.93 -0.30 1.17 16 44 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 45 H 0.07 0.78 6.18 -51.93 -0.32 0.45 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 358.32 15.07 5.40 5.40 Total: -1.00 -27.04 358.32 -11.01 -38.05 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -6.61 Total: 11.02 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: -1.78 Total: -32.63 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.70 Total: -44.92 kcal Atomic # 8 Polarization: -46.27 SS G_CDS: -1.74 Total: -48.01 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.79 kcal Atomic # 16 Polarization: 59.84 SS G_CDS: -0.55 Total: 59.29 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.04 -11.01 -38.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601383006.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.354 kcal (2) G-P(sol) polarization free energy of solvation -27.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds