Wall clock time and date at job start Sat Apr 11 2020 05:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.51792 * 2 1 4 4 C 1.53236 * 109.49518 * 120.06936 * 2 1 3 5 5 N 1.47081 * 108.52467 * 173.78725 * 4 2 1 6 6 S 1.65596 * 120.88243 * 128.83556 * 5 4 2 7 7 O 1.42103 * 106.40162 * 29.55419 * 6 5 4 8 8 O 1.42101 * 106.40303 * 162.47396 * 6 5 4 9 9 C 1.76200 * 107.21707 * 276.01444 * 6 5 4 10 10 C 1.37634 * 120.12830 * 114.56613 * 9 6 5 11 11 C 1.38616 * 120.25012 * 179.97438 * 10 9 6 12 12 C 1.38661 * 120.49836 * 0.02623 * 11 10 9 13 13 C 1.37591 * 120.24789 * 0.02562 * 12 11 10 14 14 C 1.40696 * 120.12770 * 294.28739 * 9 6 5 15 15 C 1.41404 * 120.24332 * 0.02562 * 14 9 6 16 16 H 1.07996 * 119.99469 * 331.36304 * 15 14 9 17 17 C 1.39940 * 119.99830 * 151.36456 * 15 14 9 18 18 N 1.30824 * 120.00230 * 345.82022 * 17 15 14 19 19 Si 1.86801 * 119.99596 * 165.82405 * 17 15 14 20 20 H 1.48492 * 109.47337 * 59.99796 * 19 17 15 21 21 H 1.48504 * 109.47034 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47083 * 299.99674 * 19 17 15 23 23 C 1.47080 * 118.23609 * 308.81596 * 5 4 2 24 24 H 1.09000 * 109.62898 * 170.89462 * 23 5 4 25 25 C 1.53001 * 109.78900 * 291.37936 * 23 5 4 26 26 C 1.53242 * 108.52202 * 51.17870 * 23 5 4 27 27 N 1.46891 * 109.34130 * 306.17363 * 26 23 5 28 28 C 1.46908 * 111.00003 * 187.24844 * 27 26 23 29 29 H 1.08993 * 109.47406 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46703 * 300.06567 * 1 2 3 31 31 H 1.08993 * 109.47123 * 60.06611 * 1 2 3 32 32 H 1.09008 * 109.63191 * 54.07229 * 4 2 1 33 33 H 1.09001 * 109.78762 * 293.59517 * 4 2 1 34 34 H 1.08002 * 119.87619 * 0.02562 * 10 9 6 35 35 H 1.08004 * 119.75074 * 179.97438 * 11 10 9 36 36 H 1.07998 * 119.87249 * 179.97438 * 12 11 10 37 37 H 1.08006 * 120.12842 * 179.97438 * 13 12 11 38 38 H 0.97000 * 119.99676 * 180.02562 * 18 17 15 39 39 H 1.08994 * 109.47311 * 179.12694 * 25 23 5 40 40 H 1.09002 * 109.46825 * 299.12775 * 25 23 5 41 41 H 1.09008 * 109.47360 * 59.12339 * 25 23 5 42 42 H 1.08998 * 109.49091 * 186.20864 * 26 23 5 43 43 H 1.09002 * 109.50822 * 66.14345 * 26 23 5 44 44 H 1.09002 * 109.46334 * 56.04714 * 28 27 26 45 45 H 1.08993 * 109.46870 * 176.04220 * 28 27 26 46 46 H 1.08997 * 109.46836 * 296.04864 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0414 -0.7238 1.2501 5 7 3.5043 -0.8433 1.1553 6 16 4.4793 -0.3596 2.4033 7 8 3.7256 -0.5400 3.5944 8 8 5.7440 -0.9692 2.1841 9 6 4.7268 1.3763 2.2292 10 6 4.2330 2.2430 3.1775 11 6 4.4267 3.6090 3.0433 12 6 5.1181 4.1181 1.9545 13 6 5.6195 3.2704 0.9938 14 6 5.4349 1.8812 1.1233 15 6 5.9513 0.9999 0.1455 16 1 6.2280 -0.0076 0.4190 17 6 6.1039 1.4332 -1.1763 18 7 5.5238 2.5363 -1.5742 19 14 7.1358 0.4365 -2.3727 20 1 6.5611 -0.9262 -2.5059 21 1 7.1385 1.1039 -3.6993 22 1 8.5276 0.3393 -1.8641 23 6 4.0782 -1.4042 -0.0773 24 1 5.1611 -1.2807 -0.0662 25 6 3.7316 -2.8909 -0.1802 26 6 3.4866 -0.6537 -1.2752 27 7 2.0202 -0.6939 -1.1985 28 6 1.4139 -0.1358 -2.4147 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8895 31 1 -0.3633 0.5128 -0.8905 32 1 1.5957 -1.7170 1.3063 33 1 1.7776 -0.1533 2.1407 34 1 3.6934 1.8574 4.0299 35 1 4.0355 4.2819 3.7921 36 1 5.2628 5.1842 1.8599 37 1 6.1574 3.6691 0.1463 38 1 5.6293 2.8364 -2.4906 39 1 4.1460 -3.2976 -1.1026 40 1 4.1535 -3.4222 0.6730 41 1 2.6483 -3.0121 -0.1841 42 1 3.8156 -1.1277 -2.1999 43 1 3.8234 0.3828 -1.2579 44 1 1.7894 -0.6717 -3.2865 45 1 0.3304 -0.2418 -2.3620 46 1 1.6723 0.9198 -2.4980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601383006.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:54 Heat of formation + Delta-G solvation = -61.097891 kcal Electronic energy + Delta-G solvation = -30423.010334 eV Core-core repulsion = 26631.629927 eV Total energy + Delta-G solvation = -3791.380407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.37404 -39.37045 -38.18736 -36.72077 -36.03324 -35.65195 -33.84587 -32.03540 -31.36922 -30.44705 -28.20764 -27.45093 -26.69591 -24.64177 -23.44812 -22.93721 -22.65682 -20.71326 -19.63505 -19.24877 -18.82110 -17.74944 -17.17106 -17.05918 -16.43262 -16.09157 -16.02308 -15.69609 -15.49413 -15.12543 -15.00558 -14.66442 -14.46947 -14.31344 -13.77072 -13.71770 -13.47718 -13.31543 -13.07927 -13.01676 -12.97468 -12.91966 -12.83183 -12.75168 -12.69152 -12.46256 -12.36913 -12.28661 -12.13311 -11.84293 -11.79065 -11.67289 -11.23521 -11.12123 -10.98982 -9.95162 -9.77567 -9.44107 -9.12886 -8.81785 -6.60910 -0.21241 0.53290 0.96225 1.35135 1.43309 1.47920 2.12427 2.22363 2.60355 2.97688 3.04828 3.47504 3.61313 3.79371 4.01247 4.16828 4.29656 4.30833 4.35966 4.41411 4.47855 4.51972 4.62940 4.68578 4.70582 4.76866 4.83714 4.85169 4.94962 5.00202 5.00412 5.03154 5.15277 5.16377 5.20751 5.29358 5.33163 5.42625 5.52415 5.55526 5.69185 5.81055 5.89351 5.98947 6.12595 6.16482 6.23131 6.50339 6.69418 6.82838 8.13559 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009071 B = 0.008140 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.182964 B = 3439.079799 C = 4430.470722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.069 3.931 3 H 0.016 0.984 4 C 0.133 3.867 5 N -0.986 5.986 6 S 2.714 3.286 7 O -1.007 7.007 8 O -0.998 6.998 9 C -0.797 4.797 10 C -0.017 4.017 11 C -0.253 4.253 12 C -0.077 4.077 13 C -0.185 4.185 14 C 0.170 3.830 15 C -0.488 4.488 16 H 0.106 0.894 17 C 0.065 3.935 18 N -0.792 5.792 19 Si 0.937 3.063 20 H -0.235 1.235 21 H -0.260 1.260 22 H -0.265 1.265 23 C 0.150 3.850 24 H 0.088 0.912 25 C -0.146 4.146 26 C 0.045 3.955 27 N -0.524 5.524 28 C 0.024 3.976 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.294 0.706 39 H 0.077 0.923 40 H 0.046 0.954 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.041 0.959 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.015 -4.743 -4.886 10.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.041 4.041 3 H 0.034 0.966 4 C 0.008 3.992 5 N -0.823 5.823 6 S 2.812 3.188 7 O -0.998 6.998 8 O -0.989 6.989 9 C -0.891 4.891 10 C -0.037 4.037 11 C -0.273 4.273 12 C -0.096 4.096 13 C -0.205 4.205 14 C 0.165 3.835 15 C -0.515 4.515 16 H 0.123 0.877 17 C -0.155 4.155 18 N -0.415 5.415 19 Si 0.757 3.243 20 H -0.158 1.158 21 H -0.184 1.184 22 H -0.190 1.190 23 C 0.044 3.956 24 H 0.106 0.894 25 C -0.205 4.205 26 C -0.085 4.085 27 N -0.249 5.249 28 C -0.124 4.124 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.093 0.907 45 H 0.109 0.891 46 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -7.870 -5.659 -4.391 10.641 hybrid contribution 1.027 1.877 -0.741 2.265 sum -6.843 -3.782 -5.132 9.352 Atomic orbital electron populations 1.21838 0.91442 1.03594 1.02699 1.21948 0.96996 0.94434 0.90706 0.96619 1.21599 0.78258 1.01950 0.97411 1.57573 1.16089 1.76863 1.31754 1.00567 0.72199 0.74154 0.71832 1.93407 1.72781 1.87212 1.46404 1.93418 1.42426 1.77257 1.85788 1.30205 1.24238 1.23427 1.11243 1.20540 0.93782 0.94003 0.95329 1.20851 1.10196 0.94681 1.01525 1.21216 0.95676 0.98962 0.93751 1.21526 1.05013 0.94099 0.99877 1.17258 0.84584 0.93204 0.88448 1.20480 1.36551 1.01077 0.93412 0.87687 1.26431 0.93536 0.95495 1.00032 1.69822 1.31716 1.20278 1.19704 0.85896 0.79967 0.81086 0.77372 1.15769 1.18413 1.18989 1.21225 0.97849 0.94033 0.82513 0.89439 1.22007 1.03449 0.93190 1.01877 1.22477 0.88013 1.00120 0.97867 1.62022 1.05917 1.54554 1.02418 1.22464 1.01215 0.96595 0.92093 0.90229 0.91384 0.91447 0.88823 0.90211 0.86378 0.85730 0.86219 0.86986 0.89436 0.90441 0.93460 0.90334 0.89711 0.94028 0.90683 0.89055 0.97542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.72 71.98 0.63 -2.37 16 2 C 0.07 2.09 2.60 44.99 0.12 2.20 16 3 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 4 C 0.13 4.26 5.40 86.35 0.47 4.73 16 5 N -0.99 -37.47 3.01 -489.89 -1.47 -38.95 16 6 S 2.71 122.69 5.09 -56.49 -0.29 122.41 16 7 O -1.01 -46.61 15.96 -128.00 -2.04 -48.66 16 8 O -1.00 -49.52 14.55 -128.00 -1.86 -51.38 16 9 C -0.80 -38.75 5.97 22.73 0.14 -38.62 16 10 C -0.02 -0.77 9.53 22.22 0.21 -0.56 16 11 C -0.25 -10.82 10.05 22.46 0.23 -10.59 16 12 C -0.08 -3.42 10.02 22.22 0.22 -3.20 16 13 C -0.19 -9.18 8.66 22.73 0.20 -8.98 16 14 C 0.17 8.63 5.54 -21.29 -0.12 8.51 16 15 C -0.49 -23.78 5.93 23.46 0.14 -23.64 16 16 H 0.11 5.24 3.70 -2.91 -0.01 5.23 16 17 C 0.07 2.90 3.82 85.26 0.33 3.23 16 18 N -0.79 -35.90 11.00 21.83 0.24 -35.66 16 19 Si 0.94 34.00 29.58 68.60 2.03 36.03 16 20 H -0.23 -7.82 7.11 99.48 0.71 -7.11 16 21 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 22 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 23 C 0.15 5.34 2.25 44.96 0.10 5.44 16 24 H 0.09 3.54 4.72 -2.39 -0.01 3.53 16 25 C -0.15 -4.21 9.22 71.98 0.66 -3.54 16 26 C 0.04 1.51 4.88 86.39 0.42 1.94 16 27 N -0.52 -15.12 4.24 -896.10 -3.80 -18.92 16 28 C 0.02 0.59 9.02 127.69 1.15 1.74 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.07 1.34 6.31 -2.39 -0.02 1.32 16 32 H 0.09 2.56 7.62 -2.38 -0.02 2.54 16 33 H 0.08 2.59 7.39 -2.39 -0.02 2.57 16 34 H 0.12 4.98 7.32 -2.91 -0.02 4.96 16 35 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 36 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 37 H 0.11 5.63 6.32 -2.91 -0.02 5.61 16 38 H 0.29 12.11 8.30 -92.71 -0.77 11.34 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.08 2.08 7.09 -2.38 -0.02 2.06 16 42 H 0.08 2.57 8.07 -2.39 -0.02 2.55 16 43 H 0.04 1.69 5.87 -2.39 -0.01 1.68 16 44 H 0.07 1.64 8.08 -2.39 -0.02 1.62 16 45 H 0.09 1.80 6.18 -2.39 -0.01 1.78 16 46 H 0.01 0.17 8.14 -2.39 -0.02 0.15 16 Total: -1.00 -59.43 358.32 -1.31 -60.74 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: 0.99 Total: 38.08 kcal Atomic # 6 Polarization: -68.59 SS G_CDS: 4.89 Total: -63.70 kcal Atomic # 7 Polarization: -88.49 SS G_CDS: -5.03 Total: -93.52 kcal Atomic # 8 Polarization: -96.13 SS G_CDS: -3.91 Total: -100.03 kcal Atomic # 14 Polarization: 34.00 SS G_CDS: 2.03 Total: 36.03 kcal Atomic # 16 Polarization: 122.69 SS G_CDS: -0.29 Total: 122.41 kcal Total: -59.43 -1.31 -60.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601383006.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.356 kcal (2) G-P(sol) polarization free energy of solvation -59.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds