Wall clock time and date at job start Sat Apr 11 2020 05:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.51705 * 2 1 4 4 C 1.53239 * 109.49826 * 239.93008 * 2 1 3 5 5 H 1.09006 * 109.62453 * 305.92478 * 4 2 1 6 6 C 1.53000 * 109.62570 * 66.49688 * 4 2 1 7 7 N 1.47076 * 108.52551 * 186.21359 * 4 2 1 8 8 S 1.65606 * 120.87959 * 231.16356 * 7 4 2 9 9 O 1.42098 * 106.39999 * 34.39625 * 8 7 4 10 10 O 1.42096 * 106.39938 * 167.31461 * 8 7 4 11 11 C 1.76199 * 107.21699 * 280.85575 * 8 7 4 12 12 C 1.37634 * 120.12633 * 116.01637 * 11 8 7 13 13 C 1.38617 * 120.24286 * 179.72454 * 12 11 8 14 14 C 1.38655 * 120.50541 * 0.55085 * 13 12 11 15 15 C 1.37600 * 120.24756 * 359.72419 * 14 13 12 16 16 C 1.40701 * 120.12727 * 296.29079 * 11 8 7 17 17 C 1.41400 * 120.24239 * 359.97438 * 16 11 8 18 18 H 1.07999 * 120.00052 * 325.55098 * 17 16 11 19 19 C 1.39942 * 119.99691 * 145.54720 * 17 16 11 20 20 N 1.30825 * 120.00031 * 350.56538 * 19 17 16 21 21 Si 1.86802 * 120.00165 * 170.56760 * 19 17 16 22 22 H 1.48499 * 109.47298 * 65.03934 * 21 19 17 23 23 H 1.48492 * 109.47202 * 185.04203 * 21 19 17 24 24 H 1.48502 * 109.46987 * 305.04275 * 21 19 17 25 25 C 1.47075 * 118.23970 * 51.17845 * 7 4 2 26 26 C 1.53241 * 108.52514 * 308.82089 * 25 7 4 27 27 N 1.46899 * 109.49263 * 120.06241 * 2 1 3 28 28 C 1.46901 * 111.00118 * 307.21221 * 27 2 1 29 29 H 1.09000 * 109.46770 * 186.65183 * 1 2 3 30 30 H 1.08999 * 109.46775 * 306.65629 * 1 2 3 31 31 H 1.08995 * 109.46745 * 66.65692 * 1 2 3 32 32 H 1.08998 * 109.47127 * 52.85932 * 6 4 2 33 33 H 1.09006 * 109.46588 * 172.85462 * 6 4 2 34 34 H 1.09000 * 109.47376 * 292.85326 * 6 4 2 35 35 H 1.07992 * 119.87973 * 359.97196 * 12 11 8 36 36 H 1.08003 * 119.74885 * 180.29996 * 13 12 11 37 37 H 1.08001 * 119.88089 * 179.75184 * 14 13 12 38 38 H 1.07998 * 120.13043 * 180.02562 * 15 14 13 39 39 H 0.97002 * 119.99872 * 179.97438 * 20 19 17 40 40 H 1.08998 * 109.63298 * 189.10786 * 25 7 4 41 41 H 1.09002 * 109.62497 * 68.53039 * 25 7 4 42 42 H 1.08998 * 109.49357 * 293.86954 * 26 25 7 43 43 H 1.09000 * 109.49546 * 173.78674 * 26 25 7 44 44 H 1.09001 * 109.46827 * 60.00313 * 28 27 2 45 45 H 1.09000 * 109.46826 * 179.97438 * 28 27 2 46 46 H 1.08992 * 109.47736 * 300.00285 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0275 0.0000 4 6 2.0415 -0.7238 -1.2501 5 1 1.5958 -1.7170 -1.3062 6 6 1.6712 0.0811 -2.4975 7 7 3.5043 -0.8433 -1.1552 8 16 4.4793 -0.3595 -2.4034 9 8 3.8461 0.7673 -2.9937 10 8 5.8033 -0.3258 -1.8884 11 6 4.4490 -1.6386 -3.6148 12 6 3.9240 -1.3951 -4.8636 13 6 3.9042 -2.3980 -5.8203 14 6 4.4012 -3.6591 -5.5285 15 6 4.9256 -3.9267 -4.2848 16 6 4.9561 -2.9146 -3.3074 17 6 5.4931 -3.1778 -2.0261 18 1 6.0255 -2.4032 -1.4941 19 6 5.3345 -4.4420 -1.4473 20 7 4.5382 -5.3199 -2.0012 21 14 6.2598 -4.8761 0.1163 22 1 5.7839 -4.0149 1.2285 23 1 6.0175 -6.3014 0.4554 24 1 7.7138 -4.6572 -0.0920 25 6 4.0782 -1.4041 0.0773 26 6 3.4867 -0.6535 1.2752 27 7 2.0202 -0.6937 1.1985 28 6 1.4140 -0.1357 2.4147 29 1 -0.3633 -1.0208 0.1190 30 1 -0.3633 0.6135 0.8244 31 1 -0.3632 0.4072 -0.9435 32 1 2.0181 1.1081 -2.3834 33 1 2.1432 -0.3668 -3.3721 34 1 0.5888 0.0752 -2.6258 35 1 3.5298 -0.4180 -5.1002 36 1 3.4948 -2.1967 -6.7992 37 1 4.3770 -4.4341 -6.2802 38 1 5.3126 -4.9095 -4.0597 39 1 4.4286 -6.1963 -1.6002 40 1 5.1611 -1.2805 0.0663 41 1 3.8284 -2.4627 0.1489 42 1 3.8235 0.3830 1.2575 43 1 3.8157 -1.1275 2.2000 44 1 0.3309 -0.2472 2.3648 45 1 1.7939 -0.6677 3.2869 46 1 1.6671 0.9214 2.4948 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601385660.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:58 Heat of formation + Delta-G solvation = -35.020471 kcal Electronic energy + Delta-G solvation = -29996.682535 eV Core-core repulsion = 26206.432930 eV Total energy + Delta-G solvation = -3790.249605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.19647 -37.59766 -36.60354 -34.95914 -34.60268 -33.81966 -33.04628 -30.21640 -29.62264 -28.47136 -27.84007 -25.82462 -25.44540 -22.58606 -21.79944 -21.60561 -21.16031 -19.86206 -18.02726 -17.63167 -16.65406 -16.23889 -15.79515 -15.35906 -15.34496 -14.77553 -14.40149 -14.26153 -14.24978 -13.89683 -13.32898 -13.13658 -12.92663 -12.76964 -12.58241 -12.28285 -12.11258 -12.03127 -11.94973 -11.59254 -11.43350 -11.40412 -11.29765 -11.24186 -11.16289 -11.03004 -10.93323 -10.63284 -10.57597 -10.40535 -10.35957 -9.86207 -9.74916 -9.42886 -9.23304 -8.49654 -8.08434 -7.94961 -7.55005 -7.00481 -4.76443 1.51421 2.34051 2.73137 2.97436 3.01381 3.09985 3.78092 3.79435 4.04286 4.41420 4.75126 4.92721 5.05939 5.10661 5.28974 5.34152 5.45086 5.49928 5.51789 5.61137 5.63562 5.74753 5.78487 5.83868 5.90569 6.01436 6.02490 6.08276 6.12738 6.21477 6.27859 6.37948 6.48935 6.59753 6.63136 6.78802 6.88864 6.96072 7.05498 7.21856 7.25113 7.29793 7.34584 7.50592 7.69425 7.79109 7.94608 8.34991 8.55313 8.65321 9.95008 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010538 B = 0.006931 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.355487 B = 4038.635355 C = 5491.482280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.076 3.924 3 H 0.044 0.956 4 C 0.169 3.831 5 H 0.079 0.921 6 C -0.181 4.181 7 N -0.988 5.988 8 S 2.705 3.295 9 O -0.993 6.993 10 O -0.979 6.979 11 C -0.770 4.770 12 C -0.007 4.007 13 C -0.244 4.244 14 C -0.078 4.078 15 C -0.152 4.152 16 C 0.197 3.803 17 C -0.480 4.480 18 H 0.110 0.890 19 C 0.084 3.916 20 N -0.783 5.783 21 Si 0.904 3.096 22 H -0.255 1.255 23 H -0.276 1.276 24 H -0.258 1.258 25 C 0.131 3.869 26 C 0.042 3.958 27 N -0.536 5.536 28 C 0.024 3.976 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.118 0.882 39 H 0.286 0.714 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.034 0.966 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.211 4.673 6.292 10.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 H 0.062 0.938 4 C 0.062 3.938 5 H 0.097 0.903 6 C -0.239 4.239 7 N -0.824 5.824 8 S 2.805 3.195 9 O -0.984 6.984 10 O -0.970 6.970 11 C -0.865 4.865 12 C -0.026 4.026 13 C -0.265 4.265 14 C -0.097 4.097 15 C -0.172 4.172 16 C 0.193 3.807 17 C -0.509 4.509 18 H 0.128 0.872 19 C -0.137 4.137 20 N -0.406 5.406 21 Si 0.727 3.273 22 H -0.179 1.179 23 H -0.201 1.201 24 H -0.182 1.182 25 C 0.006 3.994 26 C -0.087 4.087 27 N -0.260 5.260 28 C -0.124 4.124 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.136 0.864 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.052 0.948 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -5.962 4.749 6.286 9.880 hybrid contribution 0.315 -0.422 0.362 0.639 sum -5.647 4.327 6.648 9.737 Atomic orbital electron populations 1.21936 0.94044 1.02654 1.01911 1.22029 0.95275 0.95642 0.90475 0.93772 1.20918 0.79721 0.99367 0.93748 0.90296 1.22709 1.01613 1.02838 0.96747 1.57619 1.15329 1.79721 1.29714 1.00978 0.72115 0.73740 0.72662 1.93505 1.76165 1.50542 1.78144 1.93440 1.36188 1.87606 1.79729 1.29947 1.26369 1.17118 1.13072 1.20247 0.93129 0.97280 0.91985 1.20508 1.12257 0.94731 0.98983 1.20907 0.96863 0.95488 0.96412 1.21439 1.03519 1.00158 0.92073 1.17003 0.83410 0.88324 0.91972 1.20302 1.30781 0.98645 1.01160 0.87244 1.25913 0.93192 0.95185 0.99380 1.69769 1.26881 1.06086 1.37881 0.86405 0.81291 0.78346 0.81249 1.17890 1.20107 1.18245 1.21543 0.98197 0.98309 0.81397 1.22555 0.87303 0.99286 0.99579 1.61904 1.06716 1.55436 1.01989 1.22399 1.00394 0.97087 0.92567 0.91486 0.92713 0.91509 0.89045 0.90852 0.91888 0.87389 0.88691 0.88816 0.86376 0.90286 0.88406 0.90175 0.94782 0.89986 0.91130 0.91677 0.96097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.38 37.16 0.31 -1.38 16 2 C 0.08 1.09 2.06 -67.59 -0.14 0.95 16 3 H 0.04 0.66 8.13 -51.92 -0.42 0.24 16 4 C 0.17 2.88 3.13 -67.49 -0.21 2.67 16 5 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 6 C -0.18 -2.99 7.20 37.16 0.27 -2.73 16 7 N -0.99 -19.07 3.23 -106.20 -0.34 -19.41 16 8 S 2.70 59.61 4.55 -107.50 -0.49 59.12 16 9 O -0.99 -21.71 12.30 -57.17 -0.70 -22.41 16 10 O -0.98 -23.68 14.27 -57.17 -0.82 -24.50 16 11 C -0.77 -18.35 5.62 -38.87 -0.22 -18.57 16 12 C -0.01 -0.15 8.45 -39.66 -0.34 -0.48 16 13 C -0.24 -5.30 10.05 -39.29 -0.39 -5.70 16 14 C -0.08 -1.74 10.02 -39.66 -0.40 -2.13 16 15 C -0.15 -3.74 8.63 -38.87 -0.34 -4.08 16 16 C 0.20 4.99 5.48 -106.82 -0.59 4.40 16 17 C -0.48 -11.80 6.66 -37.74 -0.25 -12.05 16 18 H 0.11 2.70 4.57 -52.49 -0.24 2.46 16 19 C 0.08 1.93 5.25 -17.34 -0.09 1.84 16 20 N -0.78 -18.50 11.18 55.55 0.62 -17.88 16 21 Si 0.90 17.46 29.57 -169.99 -5.03 12.43 16 22 H -0.25 -4.65 7.11 56.52 0.40 -4.25 16 23 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 24 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 25 C 0.13 2.40 5.11 -3.60 -0.02 2.38 16 26 C 0.04 0.64 5.62 -3.70 -0.02 0.62 16 27 N -0.54 -7.65 4.73 -234.58 -1.11 -8.76 16 28 C 0.02 0.27 9.02 60.07 0.54 0.81 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.54 6.74 -51.93 -0.35 0.19 16 31 H 0.07 0.71 6.52 -51.93 -0.34 0.37 16 32 H 0.09 1.57 6.49 -51.93 -0.34 1.24 16 33 H 0.07 1.36 4.70 -51.93 -0.24 1.12 16 34 H 0.06 0.85 6.84 -51.93 -0.36 0.49 16 35 H 0.11 2.22 7.02 -52.49 -0.37 1.86 16 36 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 37 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.12 2.93 6.63 -52.49 -0.35 2.59 16 39 H 0.29 6.19 8.30 -40.82 -0.34 5.86 16 40 H 0.10 1.85 5.95 -51.93 -0.31 1.54 16 41 H 0.08 1.54 8.02 -51.93 -0.42 1.12 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 44 H 0.07 0.71 6.36 -51.93 -0.33 0.38 16 45 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 46 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 352.91 15.07 5.32 5.32 Total: -1.00 -27.92 352.91 -10.99 -38.92 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -6.57 Total: 10.63 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: -1.88 Total: -33.46 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -0.83 Total: -46.06 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -1.52 Total: -46.91 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Atomic # 16 Polarization: 59.61 SS G_CDS: -0.49 Total: 59.12 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.92 -10.99 -38.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601385660.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.898 kcal (2) G-P(sol) polarization free energy of solvation -27.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds