Wall clock time and date at job start Sat Apr 11 2020 05:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.51705 * 2 1 4 4 C 1.53239 * 109.49826 * 239.93008 * 2 1 3 5 5 H 1.09006 * 109.62453 * 305.92478 * 4 2 1 6 6 C 1.53000 * 109.62570 * 66.49688 * 4 2 1 7 7 N 1.47076 * 108.52551 * 186.21359 * 4 2 1 8 8 S 1.65606 * 120.87959 * 231.16356 * 7 4 2 9 9 O 1.42098 * 106.39999 * 34.39625 * 8 7 4 10 10 O 1.42096 * 106.39938 * 167.31461 * 8 7 4 11 11 C 1.76199 * 107.21699 * 280.85575 * 8 7 4 12 12 C 1.37634 * 120.12633 * 116.01637 * 11 8 7 13 13 C 1.38617 * 120.24286 * 179.72454 * 12 11 8 14 14 C 1.38655 * 120.50541 * 0.55085 * 13 12 11 15 15 C 1.37600 * 120.24756 * 359.72419 * 14 13 12 16 16 C 1.40701 * 120.12727 * 296.29079 * 11 8 7 17 17 C 1.41400 * 120.24239 * 359.97438 * 16 11 8 18 18 H 1.07999 * 120.00052 * 325.55098 * 17 16 11 19 19 C 1.39942 * 119.99691 * 145.54720 * 17 16 11 20 20 N 1.30825 * 120.00031 * 350.56538 * 19 17 16 21 21 Si 1.86802 * 120.00165 * 170.56760 * 19 17 16 22 22 H 1.48499 * 109.47298 * 65.03934 * 21 19 17 23 23 H 1.48492 * 109.47202 * 185.04203 * 21 19 17 24 24 H 1.48502 * 109.46987 * 305.04275 * 21 19 17 25 25 C 1.47075 * 118.23970 * 51.17845 * 7 4 2 26 26 C 1.53241 * 108.52514 * 308.82089 * 25 7 4 27 27 N 1.46899 * 109.49263 * 120.06241 * 2 1 3 28 28 C 1.46901 * 111.00118 * 307.21221 * 27 2 1 29 29 H 1.09000 * 109.46770 * 186.65183 * 1 2 3 30 30 H 1.08999 * 109.46775 * 306.65629 * 1 2 3 31 31 H 1.08995 * 109.46745 * 66.65692 * 1 2 3 32 32 H 1.08998 * 109.47127 * 52.85932 * 6 4 2 33 33 H 1.09006 * 109.46588 * 172.85462 * 6 4 2 34 34 H 1.09000 * 109.47376 * 292.85326 * 6 4 2 35 35 H 1.07992 * 119.87973 * 359.97196 * 12 11 8 36 36 H 1.08003 * 119.74885 * 180.29996 * 13 12 11 37 37 H 1.08001 * 119.88089 * 179.75184 * 14 13 12 38 38 H 1.07998 * 120.13043 * 180.02562 * 15 14 13 39 39 H 0.97002 * 119.99872 * 179.97438 * 20 19 17 40 40 H 1.08998 * 109.63298 * 189.10786 * 25 7 4 41 41 H 1.09002 * 109.62497 * 68.53039 * 25 7 4 42 42 H 1.08998 * 109.49357 * 293.86954 * 26 25 7 43 43 H 1.09000 * 109.49546 * 173.78674 * 26 25 7 44 44 H 1.09001 * 109.46827 * 60.00313 * 28 27 2 45 45 H 1.09000 * 109.46826 * 179.97438 * 28 27 2 46 46 H 1.08992 * 109.47736 * 300.00285 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0275 0.0000 4 6 2.0415 -0.7238 -1.2501 5 1 1.5958 -1.7170 -1.3062 6 6 1.6712 0.0811 -2.4975 7 7 3.5043 -0.8433 -1.1552 8 16 4.4793 -0.3595 -2.4034 9 8 3.8461 0.7673 -2.9937 10 8 5.8033 -0.3258 -1.8884 11 6 4.4490 -1.6386 -3.6148 12 6 3.9240 -1.3951 -4.8636 13 6 3.9042 -2.3980 -5.8203 14 6 4.4012 -3.6591 -5.5285 15 6 4.9256 -3.9267 -4.2848 16 6 4.9561 -2.9146 -3.3074 17 6 5.4931 -3.1778 -2.0261 18 1 6.0255 -2.4032 -1.4941 19 6 5.3345 -4.4420 -1.4473 20 7 4.5382 -5.3199 -2.0012 21 14 6.2598 -4.8761 0.1163 22 1 5.7839 -4.0149 1.2285 23 1 6.0175 -6.3014 0.4554 24 1 7.7138 -4.6572 -0.0920 25 6 4.0782 -1.4041 0.0773 26 6 3.4867 -0.6535 1.2752 27 7 2.0202 -0.6937 1.1985 28 6 1.4140 -0.1357 2.4147 29 1 -0.3633 -1.0208 0.1190 30 1 -0.3633 0.6135 0.8244 31 1 -0.3632 0.4072 -0.9435 32 1 2.0181 1.1081 -2.3834 33 1 2.1432 -0.3668 -3.3721 34 1 0.5888 0.0752 -2.6258 35 1 3.5298 -0.4180 -5.1002 36 1 3.4948 -2.1967 -6.7992 37 1 4.3770 -4.4341 -6.2802 38 1 5.3126 -4.9095 -4.0597 39 1 4.4286 -6.1963 -1.6002 40 1 5.1611 -1.2805 0.0663 41 1 3.8284 -2.4627 0.1489 42 1 3.8235 0.3830 1.2575 43 1 3.8157 -1.1275 2.2000 44 1 0.3309 -0.2472 2.3648 45 1 1.7939 -0.6677 3.2869 46 1 1.6671 0.9214 2.4948 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601385660.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:57 Heat of formation + Delta-G solvation = -52.673663 kcal Electronic energy + Delta-G solvation = -29997.448035 eV Core-core repulsion = 26206.432930 eV Total energy + Delta-G solvation = -3791.015105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.41737 -39.37775 -38.34382 -36.71749 -35.96752 -35.55088 -34.30537 -32.00300 -31.40848 -29.59110 -29.10639 -27.33892 -26.82460 -23.86833 -23.35730 -23.07378 -22.93784 -21.09844 -19.72526 -19.38989 -18.26882 -17.80130 -17.33913 -17.03986 -16.58222 -16.06815 -15.91405 -15.87914 -15.42554 -15.31552 -15.08204 -14.80847 -14.44263 -14.08632 -13.90039 -13.74821 -13.50151 -13.32964 -13.28285 -13.05031 -12.97077 -12.92871 -12.88482 -12.78820 -12.61544 -12.44065 -12.27675 -12.16166 -11.99005 -11.82944 -11.69021 -11.61156 -11.20895 -11.15302 -10.99403 -9.95564 -9.74435 -9.37232 -9.18964 -8.75077 -6.60472 -0.18179 0.53780 0.97905 1.38119 1.47703 1.50515 2.17416 2.21346 2.65028 2.93596 3.01437 3.47146 3.63309 3.75248 3.88286 4.09511 4.15992 4.30384 4.30894 4.35937 4.48566 4.51248 4.58677 4.64373 4.69887 4.71876 4.72775 4.76445 4.95851 4.98368 5.02072 5.10020 5.11504 5.15173 5.17095 5.21043 5.28938 5.41559 5.53078 5.54342 5.68973 5.81943 5.90259 5.98635 6.11178 6.14559 6.21547 6.51556 6.74558 6.83632 8.22628 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010538 B = 0.006931 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.355487 B = 4038.635355 C = 5491.482280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.079 3.921 3 H 0.040 0.960 4 C 0.163 3.837 5 H 0.067 0.933 6 C -0.179 4.179 7 N -0.986 5.986 8 S 2.715 3.285 9 O -0.994 6.994 10 O -1.007 7.007 11 C -0.789 4.789 12 C -0.017 4.017 13 C -0.246 4.246 14 C -0.077 4.077 15 C -0.181 4.181 16 C 0.170 3.830 17 C -0.500 4.500 18 H 0.100 0.900 19 C 0.055 3.945 20 N -0.807 5.807 21 Si 0.953 3.047 22 H -0.238 1.238 23 H -0.264 1.264 24 H -0.264 1.264 25 C 0.128 3.872 26 C 0.048 3.952 27 N -0.548 5.548 28 C 0.024 3.976 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.293 0.707 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.035 0.965 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.891 5.194 7.479 12.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.031 4.031 3 H 0.058 0.942 4 C 0.057 3.943 5 H 0.085 0.915 6 C -0.237 4.237 7 N -0.824 5.824 8 S 2.815 3.185 9 O -0.985 6.985 10 O -0.997 6.997 11 C -0.882 4.882 12 C -0.036 4.036 13 C -0.266 4.266 14 C -0.095 4.095 15 C -0.201 4.201 16 C 0.165 3.835 17 C -0.528 4.528 18 H 0.118 0.882 19 C -0.163 4.163 20 N -0.431 5.431 21 Si 0.773 3.227 22 H -0.161 1.161 23 H -0.188 1.188 24 H -0.188 1.188 25 C 0.002 3.998 26 C -0.082 4.082 27 N -0.273 5.273 28 C -0.123 4.123 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.140 0.860 38 H 0.124 0.876 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.054 0.946 43 H 0.122 0.878 44 H 0.104 0.896 45 H 0.094 0.906 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -7.655 5.269 7.452 11.912 hybrid contribution 0.777 -0.564 -0.091 0.964 sum -6.878 4.705 7.361 11.119 Atomic orbital electron populations 1.21918 0.91499 1.03126 1.03392 1.22002 0.97164 0.94696 0.89265 0.94216 1.21128 0.78154 0.99310 0.95689 0.91481 1.22673 1.03606 1.01887 0.95581 1.57481 1.16253 1.79593 1.29037 1.00576 0.71780 0.73472 0.72677 1.93501 1.75991 1.50525 1.78493 1.93394 1.38218 1.87940 1.80174 1.30308 1.26288 1.17135 1.14477 1.20574 0.92896 0.98370 0.91806 1.20916 1.11341 0.94113 1.00207 1.21251 0.95517 0.96634 0.96138 1.21472 1.05471 0.99830 0.93314 1.17327 0.84258 0.89213 0.92654 1.20340 1.31714 0.99428 1.01343 0.88207 1.26552 0.93422 0.94514 1.01848 1.69802 1.27572 1.06553 1.39183 0.85663 0.79630 0.78952 0.78469 1.16095 1.18805 1.18832 1.21578 0.97778 0.98064 0.82370 1.22490 0.88117 0.98983 0.98617 1.61902 1.06086 1.56143 1.03174 1.22479 1.01103 0.97425 0.91307 0.91639 0.90585 0.90570 0.89714 0.93097 0.88600 0.85823 0.85341 0.85954 0.87574 0.89597 0.89790 0.91640 0.94631 0.87820 0.89640 0.90566 0.95481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.38 71.98 0.60 -2.21 16 2 C 0.08 2.12 2.06 45.00 0.09 2.22 16 3 H 0.04 1.12 8.13 -2.38 -0.02 1.10 16 4 C 0.16 5.46 3.13 44.96 0.14 5.60 16 5 H 0.07 2.38 8.14 -2.38 -0.02 2.37 16 6 C -0.18 -5.78 7.20 71.98 0.52 -5.26 16 7 N -0.99 -38.52 3.23 -489.91 -1.58 -40.10 16 8 S 2.72 122.43 4.55 -56.49 -0.26 122.17 16 9 O -0.99 -43.79 12.30 -128.00 -1.57 -45.36 16 10 O -1.01 -50.42 14.27 -128.00 -1.83 -52.25 16 11 C -0.79 -38.47 5.62 22.73 0.13 -38.34 16 12 C -0.02 -0.76 8.45 22.22 0.19 -0.57 16 13 C -0.25 -10.39 10.05 22.46 0.23 -10.16 16 14 C -0.08 -3.40 10.02 22.22 0.22 -3.18 16 15 C -0.18 -9.14 8.63 22.73 0.20 -8.94 16 16 C 0.17 8.87 5.48 -21.29 -0.12 8.75 16 17 C -0.50 -25.46 6.66 23.46 0.16 -25.31 16 18 H 0.10 5.17 4.57 -2.91 -0.01 5.15 16 19 C 0.06 2.59 5.25 85.26 0.45 3.04 16 20 N -0.81 -39.00 11.18 21.83 0.24 -38.76 16 21 Si 0.95 35.80 29.57 68.60 2.03 37.83 16 22 H -0.24 -8.20 7.11 99.48 0.71 -7.50 16 23 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 24 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 25 C 0.13 4.71 5.11 86.35 0.44 5.15 16 26 C 0.05 1.37 5.62 86.38 0.49 1.85 16 27 N -0.55 -14.50 4.73 -896.07 -4.24 -18.73 16 28 C 0.02 0.46 9.02 127.69 1.15 1.61 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.21 6.74 -2.39 -0.02 1.19 16 31 H 0.08 1.37 6.52 -2.39 -0.02 1.35 16 32 H 0.08 2.84 6.49 -2.39 -0.02 2.83 16 33 H 0.05 1.87 4.70 -2.38 -0.01 1.86 16 34 H 0.10 2.39 6.84 -2.39 -0.02 2.37 16 35 H 0.12 5.04 7.02 -2.91 -0.02 5.02 16 36 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 37 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 38 H 0.11 5.48 6.63 -2.91 -0.02 5.46 16 39 H 0.29 12.85 8.30 -92.71 -0.77 12.08 16 40 H 0.08 3.29 5.95 -2.39 -0.01 3.27 16 41 H 0.07 2.57 8.02 -2.39 -0.02 2.55 16 42 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.10 2.50 8.06 -2.39 -0.02 2.48 16 44 H 0.09 1.38 6.36 -2.39 -0.02 1.37 16 45 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 46 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -61.56 352.91 -1.33 -62.89 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: 0.99 Total: 38.05 kcal Atomic # 6 Polarization: -70.63 SS G_CDS: 4.88 Total: -65.75 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -5.58 Total: -97.59 kcal Atomic # 8 Polarization: -94.21 SS G_CDS: -3.40 Total: -97.61 kcal Atomic # 14 Polarization: 35.80 SS G_CDS: 2.03 Total: 37.83 kcal Atomic # 16 Polarization: 122.43 SS G_CDS: -0.26 Total: 122.17 kcal Total: -61.56 -1.33 -62.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601385660.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.221 kcal (2) G-P(sol) polarization free energy of solvation -61.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds