Wall clock time and date at job start Sat Apr 11 2020 05:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.51763 * 2 1 4 4 C 1.52787 * 109.56266 * 240.07411 * 2 1 3 5 5 N 1.47083 * 108.76190 * 186.37054 * 4 2 1 6 6 S 1.65601 * 120.88077 * 231.12150 * 5 4 2 7 7 O 1.42096 * 106.40242 * 163.81227 * 6 5 4 8 8 O 1.42105 * 106.40190 * 30.89621 * 6 5 4 9 9 C 1.76194 * 107.22181 * 277.35406 * 6 5 4 10 10 C 1.37641 * 120.12742 * 115.89425 * 9 6 5 11 11 C 1.38616 * 120.24709 * 179.70325 * 10 9 6 12 12 C 1.38657 * 120.49980 * 0.56016 * 11 10 9 13 13 C 1.37603 * 120.25121 * 359.44316 * 12 11 10 14 14 C 1.40696 * 120.13039 * 295.87817 * 9 6 5 15 15 C 1.41406 * 120.23943 * 359.97438 * 14 9 6 16 16 H 1.07995 * 120.00049 * 328.45875 * 15 14 9 17 17 C 1.39946 * 119.99616 * 148.45836 * 15 14 9 18 18 N 1.30823 * 120.00258 * 348.82081 * 17 15 14 19 19 Si 1.86800 * 119.99552 * 168.81594 * 17 15 14 20 20 H 1.48495 * 109.47523 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46982 * 120.00535 * 19 17 15 22 22 H 1.48502 * 109.47196 * 239.99915 * 19 17 15 23 23 C 1.47079 * 118.23924 * 50.85679 * 5 4 2 24 24 C 1.53236 * 108.51895 * 309.08744 * 23 5 4 25 25 H 1.09003 * 109.49686 * 293.86982 * 24 23 5 26 26 C 1.53005 * 109.49401 * 173.78837 * 24 23 5 27 27 N 1.46902 * 109.34323 * 53.82967 * 24 23 5 28 28 C 1.46904 * 111.00072 * 172.74889 * 27 24 23 29 29 H 1.09006 * 109.46975 * 299.93619 * 1 2 3 30 30 H 1.09004 * 109.47140 * 59.93204 * 1 2 3 31 31 H 1.08995 * 109.47545 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.55645 * 66.55894 * 4 2 1 33 33 H 1.08994 * 109.46387 * 306.12863 * 4 2 1 34 34 H 1.07994 * 119.87543 * 359.97438 * 10 9 6 35 35 H 1.07997 * 119.75340 * 180.30406 * 11 10 9 36 36 H 1.08003 * 119.87609 * 179.71981 * 12 11 10 37 37 H 1.07994 * 120.12947 * 180.25392 * 13 12 11 38 38 H 0.97001 * 119.99762 * 180.02562 * 18 17 15 39 39 H 1.08998 * 109.62831 * 68.79228 * 23 5 4 40 40 H 1.08996 * 109.63246 * 189.37625 * 23 5 4 41 41 H 1.09000 * 109.46584 * 59.99905 * 26 24 23 42 42 H 1.08996 * 109.46843 * 179.97438 * 26 24 23 43 43 H 1.09003 * 109.46822 * 299.99776 * 26 24 23 44 44 H 1.09003 * 109.47197 * 59.99615 * 28 27 24 45 45 H 1.08999 * 109.46654 * 180.02562 * 28 27 24 46 46 H 1.08994 * 109.46916 * 299.99546 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0416 -0.7182 -1.2477 5 7 3.5042 -0.8433 -1.1553 6 16 4.4792 -0.3593 -2.4033 7 8 5.7915 -0.2524 -1.8690 8 8 3.8093 0.7198 -3.0406 9 6 4.5236 -1.6771 -3.5720 10 6 4.0081 -1.4976 -4.8355 11 6 4.0473 -2.5307 -5.7589 12 6 4.5945 -3.7584 -5.4184 13 6 5.1157 -3.9604 -4.1611 14 6 5.0865 -2.9168 -3.2174 15 6 5.6200 -3.1124 -1.9225 16 1 6.0670 -2.2848 -1.3919 17 6 5.5685 -4.3786 -1.3285 18 7 4.8416 -5.3242 -1.8659 19 14 6.5381 -4.7183 0.2316 20 1 7.2734 -3.4927 0.6343 21 1 5.6057 -5.1149 1.3173 22 1 7.5053 -5.8175 -0.0162 23 6 4.0782 -1.4043 0.0772 24 6 3.4866 -0.6537 1.2751 25 1 3.8235 0.3828 1.2573 26 6 3.9484 -1.3191 2.5732 27 7 2.0201 -0.6939 1.1985 28 6 1.4140 -0.1358 2.4147 29 1 -0.3633 0.5129 0.8906 30 1 -0.3634 0.5149 -0.8894 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7788 -0.1413 -2.1344 33 1 1.5923 -1.7095 -1.3061 34 1 3.5754 -0.5469 -5.1099 35 1 3.6449 -2.3796 -6.7496 36 1 4.6157 -4.5578 -6.1444 37 1 5.5450 -4.9162 -3.8993 38 1 4.8057 -6.2016 -1.4540 39 1 3.8283 -2.4628 0.1487 40 1 5.1610 -1.2807 0.0662 41 1 5.0367 -1.2911 2.6285 42 1 3.5278 -0.7846 3.4249 43 1 3.6101 -2.3551 2.5907 44 1 1.7294 0.9006 2.5353 45 1 0.3280 -0.1782 2.3316 46 1 1.7347 -0.7163 3.2797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601422413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:34 Heat of formation + Delta-G solvation = -44.467215 kcal Electronic energy + Delta-G solvation = -29638.018076 eV Core-core repulsion = 25847.358829 eV Total energy + Delta-G solvation = -3790.659247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.25600 -37.59234 -36.39041 -34.92112 -34.46417 -33.83427 -33.50335 -30.22457 -29.57028 -29.02675 -26.73772 -26.69147 -25.46621 -23.13039 -21.62564 -21.17368 -21.12248 -19.68338 -18.09780 -17.61329 -17.08850 -16.13529 -15.97913 -15.50221 -15.34701 -14.89943 -14.39725 -14.31121 -14.07141 -13.69229 -13.38113 -13.14427 -12.92545 -12.84095 -12.74885 -12.27784 -12.00861 -11.89906 -11.83887 -11.66317 -11.51215 -11.45280 -11.41939 -11.25532 -11.19590 -11.15253 -11.01121 -10.72258 -10.62159 -10.53979 -10.47850 -10.12263 -9.86534 -9.46153 -9.25480 -8.50529 -8.08110 -7.96644 -7.57909 -7.04042 -4.77608 1.47948 2.33511 2.70628 2.96604 3.04213 3.07255 3.76311 3.79008 3.99447 4.39145 4.73029 4.92486 4.98056 5.10848 5.22169 5.32333 5.40967 5.48305 5.49198 5.55349 5.57967 5.64404 5.76044 5.83561 5.86880 5.98495 6.02758 6.03827 6.10560 6.17742 6.22900 6.28021 6.36876 6.39115 6.57233 6.64098 6.79587 6.95152 7.04563 7.21975 7.25343 7.26805 7.33931 7.50867 7.68800 7.79882 7.94099 8.34605 8.52664 8.65219 9.90498 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010452 B = 0.006638 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.380242 B = 4217.427365 C = 5743.097296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 H 0.043 0.957 4 C 0.135 3.865 5 N -0.993 5.993 6 S 2.703 3.297 7 O -0.974 6.974 8 O -0.997 6.997 9 C -0.773 4.773 10 C -0.005 4.005 11 C -0.247 4.247 12 C -0.077 4.077 13 C -0.155 4.155 14 C 0.195 3.805 15 C -0.476 4.476 16 H 0.112 0.888 17 C 0.084 3.916 18 N -0.778 5.778 19 Si 0.899 3.101 20 H -0.249 1.249 21 H -0.266 1.266 22 H -0.269 1.269 23 C 0.137 3.863 24 C 0.067 3.933 25 H 0.042 0.958 26 C -0.148 4.148 27 N -0.529 5.529 28 C 0.018 3.982 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.121 0.879 38 H 0.286 0.714 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.020 0.980 45 H 0.070 0.930 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.874 3.915 7.611 10.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.039 4.039 3 H 0.061 0.939 4 C 0.009 3.991 5 N -0.828 5.828 6 S 2.803 3.197 7 O -0.965 6.965 8 O -0.987 6.987 9 C -0.869 4.869 10 C -0.025 4.025 11 C -0.267 4.267 12 C -0.096 4.096 13 C -0.175 4.175 14 C 0.190 3.810 15 C -0.504 4.504 16 H 0.130 0.870 17 C -0.137 4.137 18 N -0.402 5.402 19 Si 0.722 3.278 20 H -0.172 1.172 21 H -0.191 1.191 22 H -0.194 1.194 23 C 0.011 3.989 24 C -0.043 4.043 25 H 0.060 0.940 26 C -0.206 4.206 27 N -0.255 5.255 28 C -0.130 4.130 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.139 0.861 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.038 0.962 45 H 0.089 0.911 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.648 4.015 7.568 10.261 hybrid contribution 0.350 -0.329 0.291 0.562 sum -5.299 3.686 7.859 10.170 Atomic orbital electron populations 1.21894 0.93908 1.02852 1.01797 1.21875 0.95308 0.95789 0.90922 0.93892 1.21311 0.79868 1.01044 0.96908 1.57588 1.15570 1.79735 1.29895 1.00972 0.72546 0.73600 0.72549 1.93460 1.36875 1.87077 1.79060 1.93431 1.76055 1.52958 1.76292 1.29883 1.26111 1.18558 1.12300 1.20245 0.93141 0.97094 0.91998 1.20498 1.12159 0.95012 0.99032 1.20908 0.96799 0.95669 0.96240 1.21464 1.03562 1.00264 0.92162 1.17010 0.83558 0.88404 0.92009 1.20435 1.32844 0.96966 1.00175 0.87050 1.25936 0.93220 0.95147 0.99440 1.69793 1.28698 1.03916 1.37753 0.86365 0.80433 0.80312 0.80734 1.17213 1.19093 1.19385 1.21620 0.98215 0.98130 0.80893 1.22083 0.87313 0.98533 0.96372 0.94043 1.21896 1.01322 1.01690 0.95711 1.61939 1.06373 1.55323 1.01853 1.22504 1.00161 0.97198 0.93148 0.92350 0.91855 0.91419 0.89358 0.90810 0.87502 0.88694 0.88818 0.86143 0.90325 0.90118 0.88333 0.91758 0.92415 0.91378 0.96161 0.91098 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.73 37.16 0.32 -1.31 16 2 C 0.07 1.01 2.59 -67.82 -0.18 0.83 16 3 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 4 C 0.14 2.26 5.90 -3.83 -0.02 2.24 16 5 N -0.99 -19.18 3.27 -113.50 -0.37 -19.56 16 6 S 2.70 60.39 5.10 -107.50 -0.55 59.85 16 7 O -0.97 -23.59 14.35 -57.17 -0.82 -24.41 16 8 O -1.00 -22.87 15.80 -57.17 -0.90 -23.78 16 9 C -0.77 -18.66 5.96 -38.87 -0.23 -18.89 16 10 C 0.00 -0.11 9.53 -39.66 -0.38 -0.49 16 11 C -0.25 -5.42 10.05 -39.29 -0.39 -5.82 16 12 C -0.08 -1.74 10.02 -39.66 -0.40 -2.13 16 13 C -0.15 -3.82 8.64 -38.87 -0.34 -4.15 16 14 C 0.19 4.93 5.51 -106.82 -0.59 4.35 16 15 C -0.48 -11.64 6.64 -37.74 -0.25 -11.89 16 16 H 0.11 2.74 4.18 -52.49 -0.22 2.52 16 17 C 0.08 1.91 5.23 -17.34 -0.09 1.82 16 18 N -0.78 -18.23 11.06 55.55 0.61 -17.62 16 19 Si 0.90 17.23 29.57 -169.99 -5.03 12.20 16 20 H -0.25 -4.75 7.11 56.52 0.40 -4.35 16 21 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 C 0.14 2.50 4.31 -3.60 -0.02 2.49 16 24 C 0.07 1.01 2.60 -67.59 -0.18 0.83 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 C -0.15 -1.87 8.71 37.16 0.32 -1.55 16 27 N -0.53 -7.44 4.58 -226.88 -1.04 -8.48 16 28 C 0.02 0.20 8.56 60.07 0.51 0.71 16 29 H 0.06 0.56 6.23 -51.93 -0.32 0.24 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.45 7.12 -51.93 -0.37 1.08 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.11 2.26 7.33 -52.49 -0.38 1.88 16 35 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 37 H 0.12 2.99 6.46 -52.49 -0.34 2.65 16 38 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 39 H 0.08 1.54 8.01 -51.93 -0.42 1.13 16 40 H 0.10 1.89 5.70 -51.93 -0.30 1.60 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.61 6.33 -51.93 -0.33 0.28 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.07 0.70 5.95 -51.93 -0.31 0.39 16 46 H 0.07 0.72 6.21 -51.93 -0.32 0.40 16 LS Contribution 361.12 15.07 5.44 5.44 Total: -1.00 -28.52 361.12 -11.22 -39.74 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.67 Total: 9.56 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: -1.90 Total: -32.95 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.80 Total: -45.65 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: -1.72 Total: -48.19 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.20 kcal Atomic # 16 Polarization: 60.39 SS G_CDS: -0.55 Total: 59.85 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.52 -11.22 -39.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601422413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.730 kcal (2) G-P(sol) polarization free energy of solvation -28.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds