Wall clock time and date at job start Sat Apr 11 2020 05:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47183 * 2 1 4 4 C 1.50704 * 109.46990 * 120.00116 * 2 1 3 5 5 C 1.38230 * 120.00352 * 80.49596 * 4 2 1 6 6 C 1.38238 * 120.00002 * 179.78731 * 5 4 2 7 7 C 1.38231 * 119.99794 * 0.46597 * 6 5 4 8 8 S 1.76202 * 119.99878 * 179.78634 * 7 6 5 9 9 N 1.65594 * 107.22207 * 269.97930 * 8 7 6 10 10 O 1.42105 * 106.40081 * 23.52080 * 8 7 6 11 11 O 1.42099 * 106.40110 * 156.43562 * 8 7 6 12 12 C 1.38231 * 120.00371 * 359.76597 * 7 6 5 13 13 C 1.38234 * 120.00097 * 0.02562 * 12 7 6 14 14 N 1.46896 * 109.47544 * 239.99573 * 2 1 3 15 15 C 1.46908 * 110.99755 * 51.67000 * 14 2 1 16 16 C 1.46898 * 111.00239 * 175.62091 * 14 2 1 17 17 C 1.53005 * 109.47052 * 165.15024 * 16 14 2 18 18 C 1.50703 * 115.55182 * 281.46126 * 17 16 14 19 19 H 1.08004 * 119.99880 * 114.38790 * 18 17 16 20 20 C 1.37869 * 119.99751 * 294.38371 * 18 17 16 21 21 N 1.31519 * 119.99734 * 164.48362 * 20 18 17 22 22 Si 1.86795 * 120.00445 * 344.48721 * 20 18 17 23 23 H 1.48495 * 109.47582 * 94.05089 * 22 20 18 24 24 H 1.48501 * 109.47156 * 214.05292 * 22 20 18 25 25 H 1.48503 * 109.47281 * 334.04949 * 22 20 18 26 26 C 1.53003 * 117.49812 * 135.75166 * 17 16 14 27 27 C 1.52997 * 117.49677 * 67.13099 * 17 16 14 28 28 H 1.08994 * 109.47097 * 299.99812 * 1 2 3 29 29 H 1.08999 * 109.47003 * 60.00408 * 1 2 3 30 30 H 1.09005 * 109.47014 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99626 * 0.02562 * 5 4 2 32 32 H 1.07999 * 119.99977 * 180.24967 * 6 5 4 33 33 H 0.97001 * 119.99694 * 359.97438 * 9 8 7 34 34 H 0.97001 * 120.00596 * 179.97438 * 9 8 7 35 35 H 1.07994 * 120.00218 * 179.97438 * 12 7 6 36 36 H 1.07994 * 120.00784 * 179.97438 * 13 12 7 37 37 H 1.09001 * 109.47254 * 192.80997 * 15 14 2 38 38 H 1.09004 * 109.47057 * 312.81237 * 15 14 2 39 39 H 1.08997 * 109.46731 * 72.81029 * 15 14 2 40 40 H 1.08997 * 109.47670 * 285.15281 * 16 14 2 41 41 H 1.08999 * 109.46729 * 45.15933 * 16 14 2 42 42 H 0.97004 * 119.99821 * 180.02562 * 21 20 18 43 43 H 1.09002 * 117.49458 * 0.02562 * 26 17 16 44 44 H 1.08998 * 117.49970 * 145.02237 * 26 17 16 45 45 H 1.08997 * 117.50488 * 214.97906 * 27 17 16 46 46 H 1.09007 * 117.50011 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.0763 -2.0917 1.2616 6 6 2.5412 -2.7432 2.3887 7 6 2.9530 -2.0137 3.4882 8 16 3.5403 -2.8442 4.9269 9 7 2.2320 -3.1148 5.9053 10 8 3.9909 -4.1215 4.4970 11 8 4.3705 -1.9181 5.6141 12 6 2.9045 -0.6325 3.4590 13 6 2.4437 0.0192 2.3303 14 7 2.0197 -0.6925 -1.1993 15 6 1.3933 -0.1508 -2.4127 16 6 3.4844 -0.6221 -1.2867 17 6 3.9838 -1.6420 -2.3122 18 6 4.0428 -3.0697 -1.8333 19 1 3.3970 -3.8144 -2.2746 20 6 4.9214 -3.4251 -0.8320 21 7 4.7731 -4.5706 -0.2031 22 14 6.3224 -2.2798 -0.3686 23 1 5.9024 -1.4173 0.7649 24 1 7.5059 -3.0822 0.0321 25 1 6.6727 -1.4292 -1.5344 26 6 5.0581 -1.1827 -3.2999 27 6 3.6221 -1.4034 -3.7795 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7511 -2.6617 0.4038 32 1 2.5794 -3.8223 2.4115 33 1 1.3500 -2.8217 5.6277 34 1 2.3475 -3.5664 6.7559 35 1 3.2258 -0.0626 4.3181 36 1 2.4053 1.0982 2.3075 37 1 1.5917 -0.8169 -3.2524 38 1 0.3171 -0.0688 -2.2604 39 1 1.8063 0.8352 -2.6255 40 1 3.7823 0.3797 -1.5960 41 1 3.9177 -0.8453 -0.3118 42 1 5.3911 -4.8205 0.5016 43 1 5.4095 -0.1540 -3.2189 44 1 5.8081 -1.9131 -3.6035 45 1 3.4273 -2.2790 -4.3987 46 1 3.0281 -0.5201 -4.0143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602769276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:44 Heat of formation + Delta-G solvation = 0.632154 kcal Electronic energy + Delta-G solvation = -28826.428716 eV Core-core repulsion = 25037.725125 eV Total energy + Delta-G solvation = -3788.703591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.64391 -37.87772 -36.94647 -35.80903 -35.62366 -33.18413 -32.11815 -31.79210 -30.69755 -29.52496 -27.39966 -25.56996 -24.23818 -22.91135 -22.40648 -21.49975 -19.93092 -19.34309 -18.91066 -18.23704 -17.27712 -16.36299 -16.23595 -16.01373 -15.55323 -15.25712 -14.76016 -14.38896 -14.16115 -14.11000 -13.62481 -13.33887 -13.30872 -12.94325 -12.64739 -12.62629 -12.17425 -12.03156 -11.98935 -11.88518 -11.76737 -11.65948 -11.53095 -11.38490 -11.04082 -10.87496 -10.74516 -10.51954 -10.48873 -10.34734 -10.31729 -9.98224 -9.43185 -8.93728 -8.90520 -8.68052 -8.54433 -8.23150 -7.73684 -6.01601 -3.95447 0.54276 1.04645 1.66276 3.24569 3.33897 3.48000 3.51612 3.63932 3.96061 4.22756 4.52728 4.69109 4.78365 5.04560 5.14294 5.17323 5.30980 5.35102 5.35754 5.55971 5.65018 5.73273 5.75618 5.79964 5.89842 5.95311 5.98122 6.00633 6.02921 6.16944 6.21401 6.24695 6.28206 6.35497 6.39365 6.50286 6.60924 6.62883 6.78016 6.88275 6.98282 7.15484 7.18207 7.23505 7.56983 7.67221 7.89392 8.63172 9.04095 9.65219 11.09906 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012512 B = 0.005144 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.338640 B = 5442.118570 C = 6821.946853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.109 3.891 3 H 0.043 0.957 4 C -0.020 4.020 5 C -0.081 4.081 6 C -0.008 4.008 7 C -0.681 4.681 8 S 2.696 3.304 9 N -1.252 6.252 10 O -0.956 6.956 11 O -0.973 6.973 12 C -0.031 4.031 13 C -0.147 4.147 14 N -0.510 5.510 15 C 0.012 3.988 16 C 0.090 3.910 17 C 0.017 3.983 18 C -0.473 4.473 19 H 0.075 0.925 20 C 0.090 3.910 21 N -0.883 5.883 22 Si 0.839 3.161 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.249 1.249 26 C -0.199 4.199 27 C -0.189 4.189 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.155 0.845 32 H 0.144 0.856 33 H 0.415 0.585 34 H 0.416 0.584 35 H 0.134 0.866 36 H 0.124 0.876 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.014 0.986 40 H 0.008 0.992 41 H 0.073 0.927 42 H 0.265 0.735 43 H 0.062 0.938 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.676 9.095 7.253 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.001 3.999 3 H 0.061 0.939 4 C -0.021 4.021 5 C -0.100 4.100 6 C -0.027 4.027 7 C -0.770 4.770 8 S 2.786 3.214 9 N -0.926 5.926 10 O -0.945 6.945 11 O -0.962 6.962 12 C -0.051 4.051 13 C -0.167 4.167 14 N -0.233 5.233 15 C -0.136 4.136 16 C -0.037 4.037 17 C 0.016 3.984 18 C -0.510 4.510 19 H 0.093 0.907 20 C -0.113 4.113 21 N -0.520 5.520 22 Si 0.666 3.334 23 H -0.206 1.206 24 H -0.217 1.217 25 H -0.172 1.172 26 C -0.237 4.237 27 C -0.226 4.226 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.172 0.828 32 H 0.162 0.838 33 H 0.242 0.758 34 H 0.246 0.754 35 H 0.152 0.848 36 H 0.142 0.858 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.032 0.968 40 H 0.026 0.974 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.676 8.248 7.508 14.766 hybrid contribution 0.509 1.773 0.015 1.844 sum -9.167 10.020 7.524 15.526 Atomic orbital electron populations 1.21940 0.93379 1.03188 1.01506 1.20650 0.95537 0.94536 0.89192 0.93944 1.20180 0.93466 0.94602 0.93825 1.21382 0.97020 0.93740 0.97869 1.21089 0.90014 1.00610 0.91007 1.30291 1.21941 1.05327 1.19489 1.01609 0.72501 0.74011 0.73256 1.53132 1.25668 1.78028 1.35732 1.93640 1.78559 1.40677 1.81671 1.93567 1.64636 1.64769 1.73223 1.20706 0.93857 0.92091 0.98433 1.21040 1.02121 0.99715 0.93779 1.61872 1.07022 1.54030 1.00417 1.22844 0.98899 0.97633 0.94222 1.22012 0.85767 0.95164 1.00780 1.19312 0.96869 0.95807 0.86431 1.20068 1.21484 0.90194 1.19215 0.90678 1.24744 0.97036 0.94650 0.94900 1.69906 1.36623 1.22868 1.22558 0.87403 0.83947 0.82398 0.79669 1.20627 1.21684 1.17245 1.23114 0.92230 0.99489 1.08886 1.22973 0.97874 1.01187 1.00588 0.92445 0.91775 0.91139 0.82771 0.83817 0.75790 0.75404 0.84772 0.85804 0.89335 0.91704 0.96756 0.97386 0.90910 0.92493 0.91904 0.89718 0.89934 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.70 37.16 0.32 -1.34 16 2 C 0.11 1.62 2.28 -68.87 -0.16 1.46 16 3 H 0.04 0.60 8.00 -51.93 -0.42 0.19 16 4 C -0.02 -0.32 3.62 -104.62 -0.38 -0.70 16 5 C -0.08 -1.49 8.91 -39.58 -0.35 -1.84 16 6 C -0.01 -0.14 9.52 -39.58 -0.38 -0.52 16 7 C -0.68 -10.94 5.94 -39.59 -0.24 -11.18 16 8 S 2.70 39.94 6.28 -107.50 -0.68 39.27 16 9 N -1.25 -11.46 9.55 60.35 0.58 -10.88 16 10 O -0.96 -18.11 17.28 -57.17 -0.99 -19.10 16 11 O -0.97 -16.66 17.28 -57.17 -0.99 -17.65 16 12 C -0.03 -0.47 9.52 -39.59 -0.38 -0.84 16 13 C -0.15 -2.17 9.67 -39.58 -0.38 -2.55 16 14 N -0.51 -8.86 3.85 -236.28 -0.91 -9.77 16 15 C 0.01 0.17 8.12 60.07 0.49 0.66 16 16 C 0.09 1.84 4.28 -3.82 -0.02 1.83 16 17 C 0.02 0.38 0.96 -155.66 -0.15 0.23 16 18 C -0.47 -12.55 9.34 -34.44 -0.32 -12.87 16 19 H 0.08 2.20 8.06 -52.48 -0.42 1.78 16 20 C 0.09 2.50 5.39 -17.82 -0.10 2.41 16 21 N -0.88 -25.99 13.96 55.43 0.77 -25.22 16 22 Si 0.84 21.51 25.62 -169.99 -4.36 17.15 16 23 H -0.28 -7.25 7.09 56.52 0.40 -6.85 16 24 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 25 H -0.25 -6.00 5.47 56.52 0.31 -5.69 16 26 C -0.20 -4.19 7.51 -26.73 -0.20 -4.39 16 27 C -0.19 -3.68 8.20 -26.73 -0.22 -3.90 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.67 6.04 -51.93 -0.31 0.35 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.15 3.11 7.70 -52.49 -0.40 2.71 16 32 H 0.14 2.65 7.62 -52.49 -0.40 2.25 16 33 H 0.42 2.75 8.92 -34.46 -0.31 2.44 16 34 H 0.42 2.94 8.96 -34.47 -0.31 2.63 16 35 H 0.13 1.69 7.62 -52.49 -0.40 1.29 16 36 H 0.12 1.48 8.04 -52.49 -0.42 1.06 16 37 H 0.09 1.39 5.07 -51.93 -0.26 1.13 16 38 H 0.06 0.80 5.47 -51.93 -0.28 0.51 16 39 H 0.01 0.20 7.94 -51.93 -0.41 -0.21 16 40 H 0.01 0.16 7.75 -51.93 -0.40 -0.25 16 41 H 0.07 1.66 4.66 -51.93 -0.24 1.42 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 44 H 0.08 1.86 8.12 -51.93 -0.42 1.44 16 45 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 46 H 0.07 1.28 5.86 -51.93 -0.30 0.97 16 LS Contribution 372.15 15.07 5.61 5.61 Total: -1.00 -34.21 372.15 -10.05 -44.26 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -6.64 Total: 9.89 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: -2.45 Total: -33.56 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.44 Total: -45.87 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -1.98 Total: -36.75 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.36 Total: 17.15 kcal Atomic # 16 Polarization: 39.94 SS G_CDS: -0.68 Total: 39.27 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.21 -10.05 -44.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602769276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.897 kcal (2) G-P(sol) polarization free energy of solvation -34.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds