Wall clock time and date at job start Sat Apr 11 2020 05:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46417 * 2 1 4 4 C 1.53038 * 109.46081 * 240.03101 * 2 1 3 5 5 C 1.53118 * 109.27415 * 180.80349 * 4 2 1 6 6 H 1.09008 * 109.52340 * 177.62453 * 5 4 2 7 7 N 1.46498 * 109.52410 * 297.74965 * 5 4 2 8 8 S 1.65602 * 119.99986 * 215.00070 * 7 5 4 9 9 O 1.42095 * 106.40237 * 178.54345 * 8 7 5 10 10 O 1.42100 * 106.40311 * 311.46124 * 8 7 5 11 11 C 1.76199 * 107.21724 * 65.00200 * 8 7 5 12 12 C 1.38659 * 119.87339 * 90.00220 * 11 8 7 13 13 C 1.38617 * 120.49495 * 179.97438 * 12 11 8 14 14 C 1.37637 * 120.25355 * 0.02562 * 13 12 11 15 15 C 1.40692 * 119.74331 * 359.97438 * 14 13 12 16 16 C 1.41394 * 120.24739 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00373 * 155.23202 * 16 15 14 18 18 C 1.39953 * 119.99604 * 335.23514 * 16 15 14 19 19 N 1.30817 * 120.00153 * 342.28631 * 18 16 15 20 20 Si 1.86804 * 119.99822 * 162.28649 * 18 16 15 21 21 H 1.48504 * 109.47038 * 60.00236 * 20 18 16 22 22 H 1.48501 * 109.46990 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47387 * 300.00201 * 20 18 16 24 24 C 1.37606 * 119.87570 * 269.72043 * 11 8 7 25 25 C 1.53114 * 109.16149 * 57.65916 * 5 4 2 26 26 C 1.53035 * 109.27973 * 302.33998 * 25 5 4 27 27 N 1.46848 * 109.46255 * 119.98092 * 2 1 3 28 28 C 1.46904 * 110.99947 * 305.85739 * 27 2 1 29 29 H 1.08991 * 109.47397 * 300.01940 * 1 2 3 30 30 H 1.08996 * 109.46793 * 60.02284 * 1 2 3 31 31 H 1.09004 * 109.46961 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.50719 * 300.74466 * 4 2 1 33 33 H 1.09001 * 109.50524 * 60.86865 * 4 2 1 34 34 H 0.96994 * 120.00053 * 34.99977 * 7 5 4 35 35 H 1.07990 * 119.75398 * 359.97438 * 12 11 8 36 36 H 1.07999 * 119.86940 * 179.97438 * 13 12 11 37 37 H 1.07997 * 120.13021 * 179.97438 * 14 13 12 38 38 H 0.97001 * 120.00356 * 179.97438 * 19 18 16 39 39 H 1.07995 * 120.12233 * 0.02562 * 24 11 8 40 40 H 1.09004 * 109.50919 * 62.28331 * 25 5 4 41 41 H 1.09005 * 109.50466 * 182.36416 * 25 5 4 42 42 H 1.08999 * 109.46590 * 299.16666 * 26 25 5 43 43 H 1.08998 * 109.46731 * 179.19171 * 26 25 5 44 44 H 1.09001 * 109.47140 * 59.99706 * 28 27 2 45 45 H 1.08998 * 109.46928 * 180.02562 * 28 27 2 46 46 H 1.08999 * 109.46710 * 300.00072 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5710 -0.7359 -1.2356 6 1 3.9380 -1.2851 -2.1027 7 7 4.0746 0.6392 -1.2780 8 16 5.4698 0.9850 -2.1003 9 8 5.6675 2.3872 -1.9831 10 8 6.4313 0.0268 -1.6800 11 6 5.1626 0.6665 -3.8058 12 6 4.6748 1.6772 -4.6202 13 6 4.4291 1.4411 -5.9638 14 6 4.6669 0.1977 -6.5041 15 6 5.1618 -0.8353 -5.6873 16 6 5.4104 -2.1165 -6.2314 17 1 6.1309 -2.7712 -5.7639 18 6 4.7228 -2.5360 -7.3759 19 7 3.6273 -1.9223 -7.7426 20 14 5.3695 -3.9725 -8.3799 21 1 5.4230 -5.1876 -7.5279 22 1 4.4664 -4.2166 -9.5332 23 1 6.7327 -3.6556 -8.8763 24 6 5.4131 -0.5826 -4.3258 25 6 4.0548 -1.4188 0.0466 26 6 3.4865 -0.6778 1.2590 27 7 2.0193 -0.6919 1.1993 28 6 1.4373 -0.1109 2.4166 29 1 -0.3634 0.5141 0.8897 30 1 -0.3633 0.5135 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 1.6659 -1.7446 -1.2578 33 1 1.6896 -0.1980 -2.1400 34 1 3.5908 1.3470 -0.8245 35 1 4.4850 2.6557 -4.2046 36 1 4.0488 2.2355 -6.5888 37 1 4.4743 0.0158 -7.5511 38 1 3.1509 -2.2128 -8.5360 39 1 5.7970 -1.3671 -3.6906 40 1 3.7125 -2.4536 0.0593 41 1 5.1440 -1.3953 0.0827 42 1 3.8404 0.3531 1.2533 43 1 3.8175 -1.1701 2.1735 44 1 0.3517 -0.2015 2.3792 45 1 1.8167 -0.6415 3.2897 46 1 1.7119 0.9418 2.4838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619486950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:55 Heat of formation + Delta-G solvation = -79.599625 kcal Electronic energy + Delta-G solvation = -28269.736488 eV Core-core repulsion = 24477.553785 eV Total energy + Delta-G solvation = -3792.182702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.61729 -39.44770 -38.26336 -36.91239 -36.34589 -35.66095 -33.32546 -31.92420 -31.88890 -31.59620 -28.10747 -27.34126 -27.06229 -23.89047 -23.67304 -22.83304 -22.36509 -21.11731 -20.21118 -19.36645 -18.62549 -17.71482 -17.17044 -16.95217 -16.69394 -16.48249 -16.30713 -16.05495 -15.42364 -15.23446 -15.07361 -15.04503 -14.52714 -14.29585 -13.76462 -13.67005 -13.52492 -13.32020 -13.18938 -13.04950 -13.04018 -12.94113 -12.90084 -12.81311 -12.72332 -12.61448 -12.58550 -12.21989 -12.19115 -11.94420 -11.77288 -11.55552 -11.32122 -11.13304 -11.09138 -10.43843 -9.85527 -9.55631 -9.20225 -8.72523 -6.44404 -0.49705 0.40280 0.84899 1.38475 1.47149 1.50719 2.11671 2.18176 2.55775 2.77493 2.99004 3.46959 3.52430 3.70562 3.82081 3.96801 4.16857 4.19982 4.30138 4.35377 4.43423 4.52510 4.57711 4.62326 4.66825 4.78427 4.83092 4.84691 4.89982 4.94447 4.96435 5.02458 5.07112 5.11906 5.20792 5.22778 5.25856 5.34179 5.40906 5.43365 5.56272 5.88835 5.94104 6.05498 6.10738 6.18515 6.21863 6.52842 6.80439 6.84972 8.25082 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.003714 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.602843 B = 7537.286368 C = 8322.107417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.080 3.920 3 H 0.040 0.960 4 C -0.112 4.112 5 C 0.147 3.853 6 H 0.076 0.924 7 N -1.097 6.097 8 S 2.717 3.283 9 O -0.993 6.993 10 O -0.987 6.987 11 C -0.636 4.636 12 C -0.151 4.151 13 C -0.122 4.122 14 C -0.141 4.141 15 C 0.066 3.934 16 C -0.497 4.497 17 H 0.079 0.921 18 C 0.041 3.959 19 N -0.819 5.819 20 Si 0.980 3.020 21 H -0.259 1.259 22 H -0.265 1.265 23 H -0.263 1.263 24 C -0.143 4.143 25 C -0.133 4.133 26 C 0.059 3.941 27 N -0.544 5.544 28 C 0.020 3.980 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.420 0.580 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.292 0.708 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.031 0.969 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.411 1.456 13.432 15.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 H 0.058 0.942 4 C -0.152 4.152 5 C 0.041 3.959 6 H 0.094 0.906 7 N -0.859 5.859 8 S 2.809 3.191 9 O -0.983 6.983 10 O -0.977 6.977 11 C -0.725 4.725 12 C -0.171 4.171 13 C -0.142 4.142 14 C -0.161 4.161 15 C 0.062 3.938 16 C -0.526 4.526 17 H 0.097 0.903 18 C -0.175 4.175 19 N -0.445 5.445 20 Si 0.800 3.200 21 H -0.183 1.183 22 H -0.190 1.190 23 H -0.187 1.187 24 C -0.164 4.164 25 C -0.172 4.172 26 C -0.069 4.069 27 N -0.269 5.269 28 C -0.127 4.127 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.258 0.742 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.131 0.869 38 H 0.103 0.897 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.049 0.951 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.887 1.124 13.531 15.224 hybrid contribution 0.016 0.386 -1.213 1.273 sum -6.871 1.510 12.317 14.185 Atomic orbital electron populations 1.21885 0.92930 1.02828 1.02471 1.21624 0.96411 0.95028 0.89779 0.94217 1.21887 0.92684 1.02829 0.97782 1.20925 0.95877 0.80322 0.98820 0.90592 1.55345 1.45913 1.16473 1.68212 1.00870 0.72968 0.71938 0.73273 1.93488 1.85267 1.32369 1.87206 1.93504 1.59176 1.63588 1.81448 1.30216 1.16561 1.01731 1.24021 1.20425 1.04690 0.97467 0.94553 1.21123 1.00670 0.96868 0.95490 1.21632 1.02430 0.92299 0.99732 1.18012 0.90635 0.93850 0.91256 1.19836 1.21743 1.00477 1.10566 0.90250 1.26692 0.93012 1.00604 0.97214 1.69800 1.12380 1.39402 1.22876 0.85276 0.79222 0.77687 0.77770 1.18266 1.18962 1.18723 1.20855 1.05218 0.94801 0.95542 1.22082 1.00864 1.00593 0.93669 1.22034 0.87251 0.98941 0.98659 1.61977 1.06976 1.55310 1.02636 1.22483 1.01187 0.97240 0.91826 0.91297 0.91802 0.91778 0.89362 0.90902 0.74242 0.85427 0.85716 0.86937 0.89726 0.86993 0.89242 0.91096 0.95056 0.89468 0.90009 0.90746 0.95713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.76 71.98 0.63 -1.69 16 2 C 0.08 1.56 2.27 44.94 0.10 1.67 16 3 H 0.04 0.78 6.62 -2.39 -0.02 0.77 16 4 C -0.11 -2.62 5.07 30.65 0.16 -2.47 16 5 C 0.15 4.00 3.01 45.07 0.14 4.14 16 6 H 0.08 2.40 7.24 -2.38 -0.02 2.38 16 7 N -1.10 -30.75 4.84 -169.06 -0.82 -31.57 16 8 S 2.72 99.25 5.65 -56.49 -0.32 98.93 16 9 O -0.99 -39.21 17.27 -128.00 -2.21 -41.42 16 10 O -0.99 -40.31 16.54 -128.00 -2.12 -42.42 16 11 C -0.64 -27.41 5.81 22.22 0.13 -27.28 16 12 C -0.15 -6.42 9.53 22.46 0.21 -6.20 16 13 C -0.12 -5.44 10.02 22.22 0.22 -5.21 16 14 C -0.14 -7.11 8.70 22.73 0.20 -6.91 16 15 C 0.07 3.44 5.57 -21.29 -0.12 3.32 16 16 C -0.50 -25.86 9.05 23.46 0.21 -25.65 16 17 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 18 C 0.04 1.96 5.14 85.26 0.44 2.40 16 19 N -0.82 -40.36 10.97 21.83 0.24 -40.12 16 20 Si 0.98 36.57 29.59 68.60 2.03 38.60 16 21 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 22 H -0.27 -9.30 7.11 99.48 0.71 -8.59 16 23 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 24 C -0.14 -6.87 8.65 22.73 0.20 -6.68 16 25 C -0.13 -3.23 5.79 30.64 0.18 -3.05 16 26 C 0.06 1.22 5.32 86.32 0.46 1.67 16 27 N -0.54 -10.37 4.75 -897.16 -4.26 -14.63 16 28 C 0.02 0.30 9.05 127.69 1.16 1.46 16 29 H 0.07 0.93 6.33 -2.39 -0.02 0.92 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.42 9.83 6.98 -96.75 -0.67 9.16 16 35 H 0.13 4.80 7.60 -2.92 -0.02 4.78 16 36 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 37 H 0.11 5.82 6.18 -2.91 -0.02 5.80 16 38 H 0.29 12.97 8.30 -92.71 -0.77 12.20 16 39 H 0.11 5.20 7.60 -2.91 -0.02 5.18 16 40 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.07 1.92 7.66 -2.38 -0.02 1.90 16 42 H 0.03 0.66 7.54 -2.39 -0.02 0.64 16 43 H 0.09 1.57 8.08 -2.39 -0.02 1.55 16 44 H 0.08 1.05 6.21 -2.39 -0.01 1.03 16 45 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 46 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -62.51 371.90 -2.83 -65.34 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: 0.31 Total: 37.76 kcal Atomic # 6 Polarization: -74.79 SS G_CDS: 4.31 Total: -70.48 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -4.84 Total: -86.32 kcal Atomic # 8 Polarization: -79.52 SS G_CDS: -4.33 Total: -83.84 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 2.03 Total: 38.60 kcal Atomic # 16 Polarization: 99.25 SS G_CDS: -0.32 Total: 98.93 kcal Total: -62.51 -2.83 -65.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619486950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.256 kcal (2) G-P(sol) polarization free energy of solvation -62.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds