Wall clock time and date at job start Sat Apr 11 2020 05:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.87221 * 2 1 4 4 C 1.55136 * 110.98996 * 236.15461 * 2 1 3 5 5 C 1.54318 * 103.01708 * 206.21971 * 4 2 1 6 6 N 1.47442 * 107.23822 * 22.28204 * 5 4 2 7 7 C 1.46896 * 111.00512 * 123.25777 * 6 5 4 8 8 C 1.53000 * 109.47038 * 69.87443 * 7 6 5 9 9 N 1.46494 * 109.47412 * 180.02562 * 8 7 6 10 10 S 1.65601 * 120.00348 * 165.00118 * 9 8 7 11 11 O 1.42102 * 106.40235 * 178.53814 * 10 9 8 12 12 O 1.42100 * 106.40242 * 311.46142 * 10 9 8 13 13 C 1.76200 * 107.21562 * 65.00031 * 10 9 8 14 14 C 1.38660 * 119.87903 * 90.00463 * 13 10 9 15 15 C 1.38604 * 120.50381 * 179.97438 * 14 13 10 16 16 C 1.37642 * 120.24728 * 0.02562 * 15 14 13 17 17 C 1.40699 * 119.74621 * 359.97438 * 16 15 14 18 18 C 1.41397 * 120.24268 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99651 * 204.39237 * 18 17 16 20 20 C 1.39942 * 120.00062 * 24.39895 * 18 17 16 21 21 N 1.30828 * 120.00050 * 17.85881 * 20 18 17 22 22 Si 1.86806 * 119.99939 * 197.86783 * 20 18 17 23 23 H 1.48499 * 109.46816 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47176 * 119.99410 * 22 20 18 25 25 H 1.48501 * 109.46823 * 239.99746 * 22 20 18 26 26 C 1.37598 * 119.87537 * 269.72119 * 13 10 9 27 27 C 1.47846 * 108.56267 * 0.99045 * 6 5 4 28 28 H 1.09001 * 109.47163 * 182.39546 * 1 2 3 29 29 H 1.09007 * 109.47373 * 302.39028 * 1 2 3 30 30 H 1.08994 * 109.47216 * 62.39281 * 1 2 3 31 31 H 1.08994 * 110.70991 * 87.83100 * 4 2 1 32 32 H 1.09009 * 110.70556 * 324.59797 * 4 2 1 33 33 H 1.08999 * 109.88957 * 262.87161 * 5 4 2 34 34 H 1.09004 * 109.89338 * 141.69087 * 5 4 2 35 35 H 1.09001 * 109.46921 * 309.88074 * 7 6 5 36 36 H 1.08996 * 109.47516 * 189.87476 * 7 6 5 37 37 H 1.09008 * 109.47387 * 300.00179 * 8 7 6 38 38 H 1.08999 * 109.46919 * 60.00014 * 8 7 6 39 39 H 0.97007 * 120.00124 * 345.00132 * 9 8 7 40 40 H 1.08003 * 119.74318 * 359.97438 * 14 13 10 41 41 H 1.08005 * 119.87875 * 179.97438 * 15 14 13 42 42 H 1.08006 * 120.12720 * 180.02562 * 16 15 14 43 43 H 0.97003 * 119.99612 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.12448 * 0.02562 * 26 13 10 45 45 H 1.09004 * 110.37118 * 94.73397 * 27 6 5 46 46 H 1.09004 * 110.37251 * 217.07326 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9183 1.0184 0.0000 4 6 2.0857 -0.8067 -1.2030 5 6 3.4695 -1.2701 -0.7013 6 7 3.4321 -1.2412 0.7724 7 6 3.7628 -2.5579 1.3334 8 6 5.2447 -2.8557 1.0962 9 7 5.5744 -4.1691 1.6551 10 16 6.9896 -4.9176 1.2317 11 8 7.0304 -6.1387 1.9574 12 8 7.0695 -4.8527 -0.1856 13 6 8.3089 -3.9270 1.8503 14 6 8.8074 -4.1572 3.1236 15 6 9.8452 -3.3861 3.6229 16 6 10.3925 -2.3811 2.8581 17 6 9.8947 -2.1384 1.5646 18 6 10.4487 -1.1083 0.7701 19 1 9.8608 -0.6567 -0.0153 20 6 11.7589 -0.6742 1.0012 21 7 12.5845 -1.4222 1.6870 22 14 12.3288 0.9737 0.3307 23 1 11.2130 1.6214 -0.4046 24 1 12.7532 1.8457 1.4554 25 1 13.4731 0.7635 -0.5920 26 6 8.8446 -2.9315 1.0659 27 6 2.0857 -0.8058 1.2006 28 1 -0.3633 -1.0268 0.0430 29 1 -0.3634 0.5505 0.8678 30 1 -0.3633 0.4762 -0.9106 31 1 2.1877 -0.1687 -2.0808 32 1 1.4477 -1.6635 -1.4201 33 1 4.2420 -0.5930 -1.0660 34 1 3.6690 -2.2843 -1.0473 35 1 3.1563 -3.3224 0.8479 36 1 3.5591 -2.5582 2.4042 37 1 5.4485 -2.8555 0.0253 38 1 5.8512 -2.0912 1.5816 39 1 4.9638 -4.6004 2.2733 40 1 8.3836 -4.9435 3.7308 41 1 10.2254 -3.5740 4.6162 42 1 11.2014 -1.7817 3.2489 43 1 13.4925 -1.1211 1.8475 44 1 8.4577 -2.7566 0.0729 45 1 1.4536 -1.6706 1.4024 46 1 2.1552 -0.1711 2.0841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619488727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:59 Heat of formation + Delta-G solvation = -83.860706 kcal Electronic energy + Delta-G solvation = -27067.556993 eV Core-core repulsion = 23275.189516 eV Total energy + Delta-G solvation = -3792.367477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.19748 -39.44304 -38.29395 -36.94139 -36.78260 -35.66246 -33.89617 -31.91199 -31.58880 -30.66416 -29.07680 -27.34108 -26.06043 -23.95772 -23.65266 -22.79192 -21.62341 -21.02386 -20.62013 -19.63903 -18.49261 -17.73667 -17.45821 -17.21297 -16.94607 -16.48966 -16.34631 -15.83331 -15.53612 -15.22917 -15.05144 -14.71221 -14.45616 -14.31609 -13.93462 -13.83310 -13.68801 -13.33704 -13.29362 -13.20663 -13.11961 -13.05460 -13.03987 -12.87928 -12.81861 -12.59146 -12.18954 -12.17103 -12.01109 -11.85312 -11.55038 -11.50293 -11.46633 -11.36071 -11.14120 -10.47554 -9.85015 -9.55610 -9.27984 -8.72703 -6.44368 -0.51870 0.40743 0.84375 1.38060 1.45315 1.53684 2.07583 2.18778 2.54724 2.76791 3.04923 3.45938 3.53138 3.64259 3.74958 3.96149 3.98817 4.13710 4.30098 4.35598 4.43240 4.47133 4.50093 4.57311 4.62313 4.74357 4.84660 4.84891 4.87923 4.90138 4.95240 5.01470 5.03405 5.09519 5.12165 5.21484 5.24898 5.31369 5.41462 5.47948 5.56685 5.89024 5.94546 6.01316 6.05341 6.10533 6.17080 6.53284 6.80596 6.85268 8.25696 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009685 B = 0.003382 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.368069 B = 8276.338677 C =10334.203578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 H 0.079 0.921 4 C -0.133 4.133 5 C 0.029 3.971 6 N -0.545 5.545 7 C 0.054 3.946 8 C 0.119 3.881 9 N -1.101 6.101 10 S 2.723 3.277 11 O -0.988 6.988 12 O -0.994 6.994 13 C -0.639 4.639 14 C -0.148 4.148 15 C -0.124 4.124 16 C -0.141 4.141 17 C 0.062 3.938 18 C -0.496 4.496 19 H 0.081 0.919 20 C 0.035 3.965 21 N -0.825 5.825 22 Si 0.984 3.016 23 H -0.257 1.257 24 H -0.261 1.261 25 H -0.267 1.267 26 C -0.142 4.142 27 C 0.046 3.954 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.429 0.571 40 H 0.132 0.868 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.291 0.709 44 H 0.110 0.890 45 H 0.057 0.943 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.103 3.286 -0.272 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.120 4.120 3 H 0.098 0.902 4 C -0.172 4.172 5 C -0.099 4.099 6 N -0.270 5.270 7 C -0.075 4.075 8 C -0.007 4.007 9 N -0.864 5.864 10 S 2.815 3.185 11 O -0.978 6.978 12 O -0.984 6.984 13 C -0.728 4.728 14 C -0.169 4.169 15 C -0.143 4.143 16 C -0.161 4.161 17 C 0.059 3.941 18 C -0.525 4.525 19 H 0.099 0.901 20 C -0.180 4.180 21 N -0.451 5.451 22 Si 0.805 3.195 23 H -0.180 1.180 24 H -0.186 1.186 25 H -0.192 1.192 26 C -0.163 4.163 27 C -0.081 4.081 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.266 0.734 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.131 0.869 43 H 0.102 0.898 44 H 0.128 0.872 45 H 0.075 0.925 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.293 2.900 -0.610 19.520 hybrid contribution 0.492 0.344 0.076 0.605 sum -18.801 3.245 -0.535 19.087 Atomic orbital electron populations 1.21679 0.93049 1.02191 1.02514 1.22291 0.96572 0.99313 0.93776 0.90232 1.22842 0.95303 1.00287 0.98730 1.22977 0.98507 1.01062 0.87357 1.63399 1.28906 1.26231 1.08458 1.22331 0.93397 0.90096 1.01715 1.21259 0.98097 0.82738 0.98644 1.55052 1.37245 1.31563 1.62555 1.00659 0.72754 0.72393 0.72662 1.93498 1.87051 1.43058 1.74171 1.93498 1.86888 1.87058 1.30922 1.30233 1.21389 1.15531 1.05643 1.20469 1.00011 1.01830 0.94569 1.21149 0.96979 0.96474 0.99724 1.21666 1.01040 0.99325 0.94079 1.18046 0.91636 0.91947 0.92445 1.19889 0.98764 1.17331 1.16486 0.90101 1.26789 0.95924 1.01469 0.93802 1.69835 1.06538 1.36630 1.32089 0.85124 0.78762 0.76718 0.78947 1.17994 1.18578 1.19168 1.20820 1.01363 0.96225 0.97924 1.23168 0.87369 0.98838 0.98707 0.92444 0.91811 0.91843 0.90045 0.90838 0.91138 0.92602 0.92775 0.88687 0.91327 0.91613 0.73425 0.85027 0.85565 0.86886 0.89778 0.87187 0.92498 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.30 71.98 0.67 -0.73 16 2 C -0.10 -1.40 3.63 -9.41 -0.03 -1.44 16 3 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.13 -2.01 6.41 31.77 0.20 -1.80 16 5 C 0.03 0.58 6.21 86.65 0.54 1.11 16 6 N -0.54 -11.34 5.16 -885.54 -4.57 -15.90 16 7 C 0.05 1.08 4.68 86.30 0.40 1.49 16 8 C 0.12 3.15 6.25 86.38 0.54 3.69 16 9 N -1.10 -29.27 6.00 -187.49 -1.12 -30.39 16 10 S 2.72 99.58 5.74 -56.49 -0.32 99.26 16 11 O -0.99 -38.61 17.27 -128.00 -2.21 -40.82 16 12 O -0.99 -41.75 16.73 -128.00 -2.14 -43.89 16 13 C -0.64 -27.98 5.94 22.22 0.13 -27.84 16 14 C -0.15 -6.36 9.53 22.46 0.21 -6.15 16 15 C -0.12 -5.60 10.02 22.22 0.22 -5.38 16 16 C -0.14 -7.26 8.70 22.73 0.20 -7.06 16 17 C 0.06 3.35 5.58 -21.29 -0.12 3.23 16 18 C -0.50 -26.38 9.05 23.46 0.21 -26.17 16 19 H 0.08 4.15 7.91 -2.91 -0.02 4.13 16 20 C 0.04 1.75 5.14 85.26 0.44 2.19 16 21 N -0.83 -42.30 10.95 21.83 0.24 -42.06 16 22 Si 0.98 37.42 29.60 68.60 2.03 39.45 16 23 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 24 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 25 H -0.27 -9.79 7.11 99.48 0.71 -9.09 16 26 C -0.14 -7.01 9.26 22.73 0.21 -6.80 16 27 C 0.05 0.74 6.15 86.77 0.53 1.27 16 28 H 0.06 0.57 8.10 -2.39 -0.02 0.55 16 29 H 0.06 0.58 8.14 -2.38 -0.02 0.57 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.01 8.04 -2.38 -0.02 0.99 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.16 6.91 -2.38 -0.02 1.14 16 35 H 0.05 0.96 7.96 -2.39 -0.02 0.94 16 36 H 0.09 1.62 8.07 -2.39 -0.02 1.60 16 37 H 0.07 1.96 6.75 -2.38 -0.02 1.94 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.43 8.50 8.65 -96.74 -0.84 7.67 16 40 H 0.13 4.92 7.60 -2.91 -0.02 4.89 16 41 H 0.13 4.84 8.06 -2.91 -0.02 4.81 16 42 H 0.11 5.96 6.15 -2.91 -0.02 5.94 16 43 H 0.29 13.38 8.30 -92.71 -0.77 12.61 16 44 H 0.11 5.28 7.60 -2.91 -0.02 5.25 16 45 H 0.06 0.79 7.68 -2.39 -0.02 0.78 16 46 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -66.42 383.38 -3.59 -70.01 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: 0.14 Total: 34.73 kcal Atomic # 6 Polarization: -74.76 SS G_CDS: 4.36 Total: -70.40 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -5.45 Total: -88.35 kcal Atomic # 8 Polarization: -80.36 SS G_CDS: -4.35 Total: -84.71 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Atomic # 16 Polarization: 99.58 SS G_CDS: -0.32 Total: 99.26 kcal Total: -66.42 -3.59 -70.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619488727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.846 kcal (2) G-P(sol) polarization free energy of solvation -66.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds