Wall clock time and date at job start Sat Apr 11 2020 05:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.27451 * 2 1 4 4 C 1.54592 * 110.39581 * 122.14899 * 2 1 3 5 5 C 1.54934 * 102.92153 * 140.91627 * 4 2 1 6 6 N 1.48534 * 103.22566 * 322.58311 * 5 4 2 7 7 C 1.46905 * 110.99728 * 159.71938 * 6 5 4 8 8 C 1.53000 * 109.47002 * 52.60938 * 7 6 5 9 9 N 1.46497 * 109.47200 * 179.97438 * 8 7 6 10 10 S 1.65608 * 120.00124 * 164.99381 * 9 8 7 11 11 O 1.42101 * 106.40031 * 178.53837 * 10 9 8 12 12 O 1.42098 * 106.40128 * 311.46416 * 10 9 8 13 13 C 1.76199 * 107.21329 * 65.00296 * 10 9 8 14 14 C 1.38665 * 119.87584 * 89.99794 * 13 10 9 15 15 C 1.38616 * 120.50154 * 179.97438 * 14 13 10 16 16 C 1.37643 * 120.24855 * 0.02562 * 15 14 13 17 17 C 1.40706 * 119.74177 * 359.97438 * 16 15 14 18 18 C 1.41398 * 120.23834 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99865 * 204.38991 * 18 17 16 20 20 C 1.39942 * 120.00212 * 24.39733 * 18 17 16 21 21 N 1.30828 * 120.00050 * 17.85090 * 20 18 17 22 22 Si 1.86806 * 119.99939 * 197.85992 * 20 18 17 23 23 H 1.48499 * 109.47164 * 89.99592 * 22 20 18 24 24 H 1.48491 * 109.46843 * 209.99508 * 22 20 18 25 25 H 1.48496 * 109.46814 * 329.99567 * 22 20 18 26 26 C 1.37593 * 119.87878 * 269.72338 * 13 10 9 27 27 C 1.47898 * 105.81884 * 39.21199 * 6 5 4 28 28 H 1.09004 * 109.47197 * 182.09288 * 1 2 3 29 29 H 1.09002 * 109.47140 * 302.08589 * 1 2 3 30 30 H 1.08998 * 109.47469 * 62.08330 * 1 2 3 31 31 H 1.08998 * 110.72540 * 259.27391 * 4 2 1 32 32 H 1.09004 * 110.72435 * 22.38107 * 4 2 1 33 33 H 1.09009 * 110.66681 * 204.15223 * 5 4 2 34 34 H 1.08994 * 110.66950 * 81.02318 * 5 4 2 35 35 H 1.08992 * 109.47386 * 292.60423 * 7 6 5 36 36 H 1.09003 * 109.47206 * 172.60280 * 7 6 5 37 37 H 1.09005 * 109.47052 * 299.99439 * 8 7 6 38 38 H 1.09001 * 109.47540 * 59.99426 * 8 7 6 39 39 H 0.97003 * 120.00203 * 345.00235 * 9 8 7 40 40 H 1.07998 * 119.74692 * 359.97438 * 14 13 10 41 41 H 1.07994 * 119.87364 * 180.02562 * 15 14 13 42 42 H 1.07994 * 120.12851 * 179.97438 * 16 15 14 43 43 H 0.97003 * 119.99612 * 180.02562 * 21 20 18 44 44 H 1.08009 * 120.12567 * 0.02562 * 26 13 10 45 45 H 1.09003 * 109.91919 * 94.01945 * 27 6 5 46 46 H 1.09002 * 109.91248 * 215.31479 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0688 -0.7710 1.2268 5 6 3.2882 -1.5325 0.6493 6 7 2.8333 -1.9215 -0.7101 7 6 3.9768 -2.2222 -1.5819 8 6 4.8836 -3.2474 -0.8982 9 7 6.0237 -3.5477 -1.7679 10 16 7.3506 -4.3260 -1.1546 11 8 8.2519 -4.4981 -2.2396 12 8 7.6972 -3.6449 0.0434 13 6 6.8331 -5.9411 -0.6767 14 6 6.8971 -6.9847 -1.5876 15 6 6.4939 -8.2605 -1.2254 16 6 6.0244 -8.5047 0.0452 17 6 5.9550 -7.4534 0.9778 18 6 5.4738 -7.6923 2.2857 19 1 5.0514 -6.8825 2.8620 20 6 5.5451 -8.9781 2.8335 21 7 6.3482 -9.8685 2.3102 22 14 4.4932 -9.4232 4.3117 23 1 3.1898 -9.9625 3.8475 24 1 5.1922 -10.4500 5.1254 25 1 4.2615 -8.2108 5.1373 26 6 6.3724 -6.1634 0.6006 27 6 2.0645 -0.7671 -1.2236 28 1 -0.3634 -1.0270 0.0375 29 1 -0.3633 0.5459 0.8707 30 1 -0.3634 0.4811 -0.9080 31 1 2.3810 -0.0802 2.0099 32 1 1.3196 -1.4669 1.6045 33 1 3.5091 -2.4160 1.2485 34 1 4.1581 -0.8784 0.5914 35 1 4.5396 -1.3082 -1.7712 36 1 3.6162 -2.6291 -2.5267 37 1 5.2442 -2.8405 0.0466 38 1 4.3208 -4.1614 -0.7089 39 1 6.0014 -3.2906 -2.7029 40 1 7.2639 -6.8020 -2.5869 41 1 6.5485 -9.0658 -1.9428 42 1 5.7104 -9.4993 0.3252 43 1 6.3972 -10.7599 2.6898 44 1 6.3272 -5.3500 1.3098 45 1 2.7148 -0.1202 -1.8125 46 1 1.2326 -1.1174 -1.8347 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619488728.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:02 Heat of formation + Delta-G solvation = -62.270266 kcal Electronic energy + Delta-G solvation = -27181.254044 eV Core-core repulsion = 23389.822799 eV Total energy + Delta-G solvation = -3791.431245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.43282 -37.63250 -36.69546 -35.75931 -35.30090 -33.83518 -33.06062 -30.06933 -29.90800 -29.78505 -28.13959 -25.47891 -25.22312 -23.15851 -21.88890 -21.01926 -20.76598 -20.26249 -19.12129 -17.96972 -17.09247 -16.36240 -16.02474 -15.93401 -15.34113 -15.32323 -14.91837 -14.64075 -14.27515 -14.04644 -13.60590 -13.50656 -13.42551 -13.34205 -12.79587 -12.57579 -12.48793 -11.96242 -11.89618 -11.81014 -11.60346 -11.55006 -11.40179 -11.35215 -11.33337 -11.24464 -11.04281 -10.99136 -10.87130 -10.85359 -10.75430 -10.58800 -9.79120 -9.67067 -9.34581 -9.15526 -8.58027 -8.03093 -7.69571 -6.91330 -4.52597 1.00985 2.20248 2.63872 3.00906 3.04722 3.07439 3.45850 3.83772 3.95151 4.23075 4.33799 4.44540 4.49462 4.62705 4.82646 4.98961 5.08732 5.12937 5.20437 5.28035 5.32014 5.38935 5.42313 5.51263 5.63084 5.65193 5.73386 5.83629 5.88668 5.90258 5.99372 6.04435 6.09264 6.11646 6.19449 6.65689 6.71107 6.76437 6.83260 6.86506 7.04511 7.17595 7.23920 7.39004 7.73442 7.81132 7.94976 8.40894 8.68019 8.72597 10.04341 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009017 B = 0.003648 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.494157 B = 7672.591977 C =10003.149022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 H 0.072 0.928 4 C -0.120 4.120 5 C 0.025 3.975 6 N -0.512 5.512 7 C 0.043 3.957 8 C 0.118 3.882 9 N -1.122 6.122 10 S 2.691 3.309 11 O -0.976 6.976 12 O -0.972 6.972 13 C -0.631 4.631 14 C -0.145 4.145 15 C -0.122 4.122 16 C -0.117 4.117 17 C 0.092 3.908 18 C -0.460 4.460 19 H 0.083 0.917 20 C 0.075 3.925 21 N -0.794 5.794 22 Si 0.912 3.088 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.260 1.260 26 C -0.127 4.127 27 C 0.040 3.960 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.412 0.588 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.283 0.717 44 H 0.111 0.889 45 H 0.043 0.957 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.605 14.045 -4.815 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.091 0.909 4 C -0.158 4.158 5 C -0.102 4.102 6 N -0.237 5.237 7 C -0.087 4.087 8 C -0.009 4.009 9 N -0.880 5.880 10 S 2.787 3.213 11 O -0.966 6.966 12 O -0.961 6.961 13 C -0.723 4.723 14 C -0.166 4.166 15 C -0.141 4.141 16 C -0.137 4.137 17 C 0.088 3.912 18 C -0.489 4.489 19 H 0.101 0.899 20 C -0.143 4.143 21 N -0.419 5.419 22 Si 0.736 3.264 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.184 1.184 26 C -0.148 4.148 27 C -0.089 4.089 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.245 0.755 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.143 0.857 43 H 0.094 0.906 44 H 0.129 0.871 45 H 0.062 0.938 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.973 13.675 -4.496 16.963 hybrid contribution -0.298 -0.186 0.230 0.420 sum -9.271 13.490 -4.266 16.915 Atomic orbital electron populations 1.21823 0.94337 1.02275 1.01424 1.22002 0.96487 0.98959 0.94912 0.90946 1.22589 0.97645 0.98764 0.96811 1.23376 0.96593 0.99813 0.90465 1.64782 1.20403 1.36197 1.02342 1.22452 0.91080 0.98011 0.97157 1.21278 0.86812 0.99677 0.93121 1.55540 1.35134 1.76332 1.21015 1.01605 0.72293 0.74427 0.73011 1.93521 1.60846 1.87205 1.55063 1.93524 1.81446 1.73570 1.47610 1.29701 1.19642 1.19404 1.03582 1.20083 1.06095 0.92981 0.97480 1.20817 1.01072 0.95488 0.96737 1.21663 1.00196 1.00307 0.91521 1.17676 0.89538 0.90674 0.93269 1.19609 1.35464 0.94969 0.98908 0.89895 1.25939 0.93747 0.95951 0.98694 1.69788 1.27966 1.05428 1.38721 0.86240 0.80360 0.79218 0.80566 1.19154 1.20231 1.18408 1.20740 1.02079 0.98659 0.93302 1.22993 0.98065 0.90976 0.96819 0.92020 0.92704 0.92803 0.91088 0.90366 0.89058 0.93314 0.93999 0.89866 0.90283 0.90170 0.75526 0.87616 0.88376 0.85723 0.90559 0.87089 0.93839 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.90 37.16 0.33 -0.66 16 2 C -0.10 -0.84 3.58 -89.26 -0.32 -1.16 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 4 C -0.12 -1.06 6.61 -24.87 -0.16 -1.23 16 5 C 0.03 0.27 5.10 -1.90 -0.01 0.26 16 6 N -0.51 -5.63 5.40 -230.45 -1.24 -6.87 16 7 C 0.04 0.46 5.17 -3.82 -0.02 0.44 16 8 C 0.12 1.58 5.88 -4.04 -0.02 1.55 16 9 N -1.12 -15.74 6.00 -10.61 -0.06 -15.80 16 10 S 2.69 50.27 5.74 -107.50 -0.62 49.65 16 11 O -0.98 -19.94 17.27 -57.17 -0.99 -20.93 16 12 O -0.97 -20.42 16.73 -57.17 -0.96 -21.38 16 13 C -0.63 -13.75 5.94 -39.66 -0.24 -13.99 16 14 C -0.15 -3.18 9.53 -39.28 -0.37 -3.55 16 15 C -0.12 -2.75 10.02 -39.66 -0.40 -3.14 16 16 C -0.12 -2.91 8.70 -38.87 -0.34 -3.25 16 17 C 0.09 2.36 5.58 -106.82 -0.60 1.76 16 18 C -0.46 -11.71 9.05 -37.74 -0.34 -12.05 16 19 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 20 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 21 N -0.79 -19.81 10.95 55.55 0.61 -19.20 16 22 Si 0.91 17.99 29.60 -169.99 -5.03 12.96 16 23 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 24 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 25 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 26 C -0.13 -3.00 9.26 -38.88 -0.36 -3.36 16 27 C 0.04 0.36 6.36 -2.76 -0.02 0.34 16 28 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.72 7.85 -51.93 -0.41 0.31 16 33 H 0.09 1.04 7.67 -51.92 -0.40 0.65 16 34 H 0.05 0.51 8.00 -51.93 -0.42 0.10 16 35 H 0.04 0.42 7.81 -51.93 -0.41 0.02 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.10 6.40 -51.93 -0.33 0.77 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.41 4.62 8.65 -34.47 -0.30 4.32 16 40 H 0.11 2.09 7.60 -52.49 -0.40 1.69 16 41 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 42 H 0.13 3.15 6.15 -52.49 -0.32 2.83 16 43 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 44 H 0.11 2.51 7.60 -52.48 -0.40 2.11 16 45 H 0.04 0.37 7.57 -51.93 -0.39 -0.02 16 46 H 0.08 0.70 7.68 -51.93 -0.40 0.30 16 LS Contribution 382.03 15.07 5.76 5.76 Total: -1.00 -30.43 382.03 -12.59 -43.02 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.10 Total: 9.12 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: -2.96 Total: -36.32 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: -0.70 Total: -41.87 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -1.94 Total: -42.31 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Atomic # 16 Polarization: 50.27 SS G_CDS: -0.62 Total: 49.65 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.43 -12.59 -43.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619488728.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.253 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds