Wall clock time and date at job start Sat Apr 11 2020 05:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.48704 * 2 1 4 4 C 1.53234 * 109.51662 * 239.93350 * 2 1 3 5 5 N 1.47080 * 108.51964 * 186.19483 * 4 2 1 6 6 S 1.65598 * 120.87763 * 231.45601 * 5 4 2 7 7 O 1.42100 * 106.40624 * 16.27530 * 6 5 4 8 8 O 1.42103 * 106.40186 * 149.19480 * 6 5 4 9 9 C 1.76207 * 107.21733 * 262.73353 * 6 5 4 10 10 C 1.38659 * 119.87242 * 269.72802 * 9 6 5 11 11 C 1.38614 * 120.49723 * 179.72226 * 10 9 6 12 12 C 1.37643 * 120.24719 * 0.55226 * 11 10 9 13 13 C 1.40692 * 119.74456 * 359.72684 * 12 11 10 14 14 C 1.41401 * 120.24302 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99340 * 151.12706 * 14 13 12 16 16 C 1.39936 * 119.99992 * 331.12838 * 14 13 12 17 17 N 1.30821 * 120.00520 * 349.52520 * 16 14 13 18 18 Si 1.86810 * 119.99746 * 169.52173 * 16 14 13 19 19 H 1.48502 * 109.46891 * 60.00374 * 18 16 14 20 20 H 1.48497 * 109.47149 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.46984 * 300.00331 * 18 16 14 22 22 C 1.37589 * 119.87391 * 90.00600 * 9 6 5 23 23 C 1.47073 * 118.23880 * 51.18210 * 5 4 2 24 24 H 1.09003 * 109.63085 * 68.52621 * 23 5 4 25 25 C 1.52997 * 109.63336 * 189.10337 * 23 5 4 26 26 C 1.53240 * 108.52432 * 308.81688 * 23 5 4 27 27 N 1.46894 * 109.49276 * 120.04811 * 2 1 3 28 28 C 1.46900 * 111.00183 * 307.24645 * 27 2 1 29 29 H 1.08997 * 109.47324 * 299.94750 * 1 2 3 30 30 H 1.08999 * 109.47301 * 59.95408 * 1 2 3 31 31 H 1.09002 * 109.46830 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.63119 * 66.48422 * 4 2 1 33 33 H 1.09001 * 109.62897 * 305.90160 * 4 2 1 34 34 H 1.08002 * 119.75296 * 359.97438 * 10 9 6 35 35 H 1.07996 * 119.87640 * 180.28067 * 11 10 9 36 36 H 1.07998 * 120.12321 * 179.74698 * 12 11 10 37 37 H 0.96997 * 120.00252 * 180.02562 * 17 16 14 38 38 H 1.08001 * 120.12978 * 359.97008 * 22 9 6 39 39 H 1.09000 * 109.47020 * 66.34808 * 25 23 5 40 40 H 1.08999 * 109.47892 * 186.35251 * 25 23 5 41 41 H 1.09007 * 109.46813 * 306.35612 * 25 23 5 42 42 H 1.08998 * 109.49548 * 173.78690 * 26 23 5 43 43 H 1.08996 * 109.49074 * 293.84441 * 26 23 5 44 44 H 1.09004 * 109.47066 * 299.64558 * 28 27 2 45 45 H 1.08998 * 109.47248 * 59.65198 * 28 27 2 46 46 H 1.09007 * 109.47133 * 179.65086 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0420 -0.7236 -1.2500 5 7 3.5049 -0.8424 -1.1548 6 16 4.4802 -0.3516 -2.3998 7 8 3.6795 0.4722 -3.2362 8 8 5.6949 0.0889 -1.8084 9 6 4.8783 -1.7837 -3.3462 10 6 6.0070 -2.5261 -3.0338 11 6 6.3292 -3.6581 -3.7660 12 6 5.5362 -4.0510 -4.8202 13 6 4.3917 -3.3020 -5.1498 14 6 3.5699 -3.6958 -6.2310 15 1 2.5155 -3.4624 -6.2206 16 6 4.1229 -4.3878 -7.3143 17 7 5.4218 -4.4923 -7.4296 18 14 3.0061 -5.1625 -8.5959 19 1 2.1748 -4.1081 -9.2303 20 1 3.8322 -5.8315 -9.6329 21 1 2.1237 -6.1630 -7.9437 22 6 4.0712 -2.1577 -4.3958 23 6 4.0788 -1.4029 0.0779 24 1 3.8295 -2.4616 0.1495 25 6 5.5988 -1.2288 0.0628 26 6 3.4867 -0.6525 1.2757 27 7 2.0202 -0.6934 1.1986 28 6 1.4135 -0.1356 2.4146 29 1 -0.3634 0.5130 0.8904 30 1 -0.3634 0.5145 -0.8896 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7782 -0.1504 -2.1387 33 1 1.5969 -1.7170 -1.3061 34 1 6.6376 -2.2224 -2.2113 35 1 7.2082 -4.2315 -3.5111 36 1 5.7914 -4.9310 -5.3919 37 1 5.8050 -4.9716 -8.1808 38 1 3.1948 -1.5757 -4.6399 39 1 5.8435 -0.1679 0.1136 40 1 6.0321 -1.7432 0.9205 41 1 6.0037 -1.6514 -0.8569 42 1 3.8157 -1.1263 2.2005 43 1 3.8234 0.3839 1.2581 44 1 1.6713 0.9202 2.4979 45 1 0.3300 -0.2420 2.3617 46 1 1.7890 -0.6712 3.2867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619494480.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:07 Heat of formation + Delta-G solvation = -29.731039 kcal Electronic energy + Delta-G solvation = -28579.082574 eV Core-core repulsion = 24789.062336 eV Total energy + Delta-G solvation = -3790.020238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.44000 -37.66266 -37.04075 -35.42573 -35.04985 -33.80458 -33.03925 -30.10402 -29.82404 -29.59364 -27.71432 -25.54255 -25.15512 -23.92346 -21.90928 -21.75537 -21.01299 -20.15808 -18.62855 -17.71457 -16.75486 -16.27451 -16.01750 -15.77862 -15.27226 -14.99953 -14.77485 -14.68101 -14.54711 -14.18170 -13.47012 -13.41534 -13.25016 -12.76596 -12.72276 -12.48881 -12.31897 -12.09311 -12.00843 -11.91539 -11.75941 -11.58746 -11.37921 -11.35796 -11.32475 -11.10072 -11.03905 -10.96324 -10.90082 -10.81327 -10.52461 -9.98318 -9.69577 -9.61532 -9.36589 -8.89323 -8.36922 -8.01257 -7.64575 -6.84708 -4.54225 0.97206 2.20333 2.64330 3.01328 3.04070 3.07943 3.41055 3.75289 3.85743 4.27653 4.45322 4.64943 4.69693 4.81907 4.98593 5.05223 5.18325 5.22847 5.33749 5.34704 5.39322 5.48450 5.54049 5.62164 5.69808 5.72630 5.77101 5.78703 5.93847 5.99538 6.05988 6.13246 6.23161 6.32806 6.61430 6.69246 6.70274 6.78856 6.92942 6.95356 6.97084 7.07902 7.23205 7.37115 7.72089 7.82529 7.95601 8.41513 8.69550 8.73225 10.10462 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016315 B = 0.003612 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.778716 B = 7750.506463 C = 8588.439531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 H 0.045 0.955 4 C 0.127 3.873 5 N -0.999 5.999 6 S 2.684 3.316 7 O -0.973 6.973 8 O -0.970 6.970 9 C -0.634 4.634 10 C -0.146 4.146 11 C -0.124 4.124 12 C -0.110 4.110 13 C 0.091 3.909 14 C -0.462 4.462 15 H 0.081 0.919 16 C 0.072 3.928 17 N -0.804 5.804 18 Si 0.915 3.085 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.121 4.121 23 C 0.160 3.840 24 H 0.082 0.918 25 C -0.188 4.188 26 C 0.050 3.950 27 N -0.537 5.537 28 C 0.022 3.978 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.127 0.873 37 H 0.283 0.717 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.023 0.977 45 H 0.073 0.927 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.778 4.065 14.846 16.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.040 4.040 3 H 0.063 0.937 4 C 0.001 3.999 5 N -0.836 5.836 6 S 2.783 3.217 7 O -0.964 6.964 8 O -0.960 6.960 9 C -0.725 4.725 10 C -0.167 4.167 11 C -0.143 4.143 12 C -0.130 4.130 13 C 0.088 3.912 14 C -0.492 4.492 15 H 0.099 0.901 16 C -0.144 4.144 17 N -0.430 5.430 18 Si 0.740 3.260 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.142 4.142 23 C 0.054 3.946 24 H 0.100 0.900 25 C -0.246 4.246 26 C -0.080 4.080 27 N -0.262 5.262 28 C -0.126 4.126 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.117 0.883 36 H 0.145 0.855 37 H 0.094 0.906 38 H 0.128 0.872 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.057 0.943 44 H 0.041 0.959 45 H 0.092 0.908 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.475 4.376 14.481 16.088 hybrid contribution -0.102 -0.318 -0.814 0.879 sum -5.577 4.058 13.667 15.309 Atomic orbital electron populations 1.21901 0.93571 1.03035 1.02126 1.21988 0.95650 0.95763 0.90613 0.93707 1.21577 0.78964 1.01669 0.97682 1.57899 1.16091 1.80024 1.29598 1.01898 0.72812 0.74814 0.72190 1.93489 1.70105 1.65954 1.66846 1.93597 1.45159 1.81148 1.76097 1.29800 1.06856 1.22179 1.13702 1.20218 0.96849 0.97713 1.01895 1.20844 0.99242 0.97079 0.97149 1.21707 0.96262 0.99833 0.95190 1.17693 0.92484 0.89485 0.91533 1.19556 0.96527 1.31587 1.01559 0.90102 1.25907 0.95388 0.94113 0.99024 1.69727 1.11588 1.32528 1.29153 0.86245 0.80429 0.79898 0.79471 1.18865 1.20274 1.18783 1.20791 0.99527 0.96996 0.96871 1.21038 0.93116 0.97919 0.82516 0.90008 1.22867 0.92566 1.05412 1.03787 1.22533 0.87181 0.99483 0.98788 1.61899 1.06569 1.55567 1.02180 1.22430 1.00580 0.97287 0.92299 0.92211 0.91589 0.91305 0.88258 0.90448 0.87137 0.88319 0.85504 0.90608 0.87151 0.89030 0.91769 0.89871 0.89721 0.94274 0.95877 0.90829 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.72 37.16 0.32 -1.04 16 2 C 0.07 0.82 2.60 -67.59 -0.18 0.64 16 3 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 4 C 0.13 1.76 5.97 -3.60 -0.02 1.74 16 5 N -1.00 -15.59 3.33 -106.21 -0.35 -15.94 16 6 S 2.68 51.57 5.30 -107.50 -0.57 51.00 16 7 O -0.97 -20.86 15.72 -57.17 -0.90 -21.76 16 8 O -0.97 -19.14 12.52 -57.17 -0.72 -19.85 16 9 C -0.63 -13.96 5.96 -39.66 -0.24 -14.19 16 10 C -0.15 -3.14 8.91 -39.29 -0.35 -3.49 16 11 C -0.12 -2.77 10.02 -39.66 -0.40 -3.17 16 12 C -0.11 -2.74 8.66 -38.87 -0.34 -3.08 16 13 C 0.09 2.37 5.55 -106.82 -0.59 1.78 16 14 C -0.46 -11.92 9.06 -37.74 -0.34 -12.27 16 15 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 16 C 0.07 1.77 5.26 -17.35 -0.09 1.68 16 17 N -0.80 -20.27 10.84 55.55 0.60 -19.67 16 18 Si 0.92 18.27 29.57 -169.99 -5.03 13.24 16 19 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 20 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 22 C -0.12 -2.92 9.26 -38.87 -0.36 -3.28 16 23 C 0.16 2.17 3.67 -67.50 -0.25 1.92 16 24 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 25 C -0.19 -2.61 7.55 37.16 0.28 -2.33 16 26 C 0.05 0.57 4.91 -3.70 -0.02 0.55 16 27 N -0.54 -6.02 4.73 -234.58 -1.11 -7.13 16 28 C 0.02 0.19 9.02 60.06 0.54 0.73 16 29 H 0.06 0.47 6.31 -51.93 -0.33 0.14 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 1.42 6.80 -51.93 -0.35 1.07 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.11 2.11 5.45 -52.49 -0.29 1.83 16 35 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.13 3.22 6.22 -52.49 -0.33 2.89 16 37 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 38 H 0.11 2.57 7.60 -52.49 -0.40 2.17 16 39 H 0.09 1.36 6.54 -51.93 -0.34 1.02 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.32 3.16 -51.92 -0.16 1.15 16 42 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 43 H 0.04 0.47 8.13 -51.93 -0.42 0.05 16 44 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 45 H 0.07 0.57 6.18 -51.93 -0.32 0.24 16 46 H 0.07 0.51 8.08 -51.92 -0.42 0.09 16 LS Contribution 362.22 15.07 5.46 5.46 Total: -1.00 -29.62 362.22 -11.35 -40.97 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.71 Total: 7.48 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: -2.02 Total: -33.80 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.86 Total: -42.74 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -1.61 Total: -41.61 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Atomic # 16 Polarization: 51.57 SS G_CDS: -0.57 Total: 51.00 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.62 -11.35 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494480.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.238 kcal (2) G-P(sol) polarization free energy of solvation -29.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds