Wall clock time and date at job start Sat Apr 11 2020 05:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.49281 * 2 1 4 4 C 1.53235 * 109.49565 * 120.05942 * 2 1 3 5 5 H 1.08999 * 109.63250 * 53.90637 * 4 2 1 6 6 C 1.53001 * 109.62563 * 293.52424 * 4 2 1 7 7 N 1.47077 * 108.52348 * 173.81603 * 4 2 1 8 8 S 1.65593 * 120.88461 * 128.79203 * 7 4 2 9 9 O 1.42104 * 106.40469 * 196.47814 * 8 7 4 10 10 O 1.42097 * 106.40215 * 329.39469 * 8 7 4 11 11 C 1.76198 * 107.21946 * 82.93872 * 8 7 4 12 12 C 1.38664 * 119.87357 * 269.72598 * 11 8 7 13 13 C 1.38614 * 120.49860 * 179.71918 * 12 11 8 14 14 C 1.37632 * 120.24742 * 0.55664 * 13 12 11 15 15 C 1.40705 * 119.74780 * 359.72427 * 14 13 12 16 16 C 1.41398 * 120.24221 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99649 * 204.48619 * 16 15 14 18 18 C 1.39938 * 120.00263 * 24.49161 * 16 15 14 19 19 N 1.30833 * 120.00152 * 17.33368 * 18 16 15 20 20 Si 1.86796 * 120.00066 * 197.32905 * 18 16 15 21 21 H 1.48501 * 109.47070 * 60.00026 * 20 18 16 22 22 H 1.48502 * 109.47209 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47036 * 299.99972 * 20 18 16 24 24 C 1.37596 * 119.87875 * 90.00003 * 11 8 7 25 25 C 1.47083 * 118.23571 * 308.81252 * 7 4 2 26 26 C 1.53238 * 108.52352 * 51.18368 * 25 7 4 27 27 N 1.46903 * 109.34180 * 306.17446 * 26 25 7 28 28 C 1.46894 * 111.00178 * 187.24992 * 27 26 25 29 29 H 1.09000 * 109.46881 * 299.99989 * 1 2 3 30 30 H 1.09001 * 109.47439 * 59.99107 * 1 2 3 31 31 H 1.08999 * 109.47625 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47147 * 70.32653 * 6 4 2 33 33 H 1.09007 * 109.46942 * 190.33015 * 6 4 2 34 34 H 1.09005 * 109.47382 * 310.32493 * 6 4 2 35 35 H 1.08000 * 119.74943 * 359.97438 * 12 11 8 36 36 H 1.08001 * 119.87488 * 180.28226 * 13 12 11 37 37 H 1.08003 * 120.12721 * 179.70027 * 14 13 12 38 38 H 0.96993 * 120.00191 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.12476 * 359.97438 * 24 11 8 40 40 H 1.08995 * 109.62879 * 170.89677 * 25 7 4 41 41 H 1.08997 * 109.62944 * 291.27767 * 25 7 4 42 42 H 1.09002 * 109.49025 * 66.12597 * 26 25 7 43 43 H 1.08995 * 109.49600 * 186.21163 * 26 25 7 44 44 H 1.08999 * 109.47597 * 295.69538 * 28 27 26 45 45 H 1.08999 * 109.46810 * 55.69851 * 28 27 26 46 46 H 1.09006 * 109.47085 * 175.69138 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0414 -0.7235 1.2502 5 1 1.5935 -1.7156 1.3082 6 6 1.6706 0.0813 2.4975 7 7 3.5043 -0.8424 1.1557 8 16 4.4789 -0.3573 2.4035 9 8 5.7889 -0.2372 1.8662 10 8 3.8023 0.7130 3.0484 11 6 4.5370 -1.6810 3.5649 12 6 3.6076 -1.7398 4.5923 13 6 3.6378 -2.7784 5.5097 14 6 4.6000 -3.7580 5.4165 15 6 5.5518 -3.7055 4.3816 16 6 6.5453 -4.7062 4.2762 17 1 7.4773 -4.4910 3.7748 18 6 6.3208 -5.9752 4.8216 19 7 5.1044 -6.3531 5.1203 20 14 7.7580 -7.1298 5.1229 21 1 8.7118 -6.4965 6.0686 22 1 7.2575 -8.4025 5.7018 23 1 8.4470 -7.4085 3.8373 24 6 5.5079 -2.6495 3.4524 25 6 4.0787 -1.4032 -0.0767 26 6 3.4871 -0.6530 -1.2748 27 7 2.0206 -0.6936 -1.1984 28 6 1.4144 -0.1360 -2.4147 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.5938 0.0282 2.6574 33 1 2.1875 -0.3322 3.3636 34 1 1.9667 1.1213 2.3602 35 1 2.8520 -0.9727 4.6759 36 1 2.9062 -2.8167 6.3033 37 1 4.6247 -4.5638 6.1353 38 1 4.9489 -7.2325 5.4986 39 1 6.2333 -2.5997 2.6538 40 1 5.1615 -1.2792 -0.0654 41 1 3.8322 -2.4627 -0.1465 42 1 3.8235 0.3836 -1.2570 43 1 3.8164 -1.1269 -2.1994 44 1 1.6672 0.9213 -2.4949 45 1 1.7950 -0.6676 -3.2869 46 1 0.3313 -0.2479 -2.3651 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619494722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:21 Heat of formation + Delta-G solvation = -28.628589 kcal Electronic energy + Delta-G solvation = -28687.850290 eV Core-core repulsion = 24897.877858 eV Total energy + Delta-G solvation = -3789.972432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.49566 -37.65141 -36.99374 -35.38423 -34.90243 -33.85244 -33.34407 -30.10167 -29.80515 -28.70514 -28.18388 -26.04767 -25.47440 -22.89308 -22.14955 -21.80303 -21.00356 -20.16759 -18.64002 -17.74652 -16.79217 -16.37314 -15.97454 -15.66340 -15.25095 -15.05942 -14.75797 -14.55458 -14.51193 -14.11971 -13.47918 -13.36875 -13.18377 -12.92123 -12.63426 -12.49051 -12.31665 -12.29396 -11.94273 -11.82237 -11.70359 -11.65699 -11.41120 -11.35943 -11.31508 -11.06466 -11.01015 -10.94283 -10.87648 -10.71584 -10.57373 -9.96582 -9.70657 -9.56652 -9.33703 -8.87133 -8.34137 -8.01256 -7.69774 -6.91988 -4.53499 0.99052 2.20740 2.64441 2.99648 3.01899 3.08542 3.42616 3.78604 3.82986 4.28444 4.41857 4.65500 4.72420 4.83375 5.04616 5.09466 5.22389 5.25493 5.36310 5.39104 5.42200 5.46137 5.53531 5.60720 5.70176 5.73082 5.79986 5.91176 5.97164 6.03249 6.07247 6.14481 6.26326 6.34969 6.61867 6.70479 6.72079 6.78604 6.94858 6.97173 7.00833 7.05578 7.22731 7.38377 7.73441 7.81154 7.94899 8.40513 8.67292 8.72169 10.03238 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016599 B = 0.003558 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.493126 B = 7868.127690 C = 8226.939464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.075 3.925 3 H 0.046 0.954 4 C 0.166 3.834 5 H 0.082 0.918 6 C -0.186 4.186 7 N -0.998 5.998 8 S 2.685 3.315 9 O -0.975 6.975 10 O -0.970 6.970 11 C -0.630 4.630 12 C -0.153 4.153 13 C -0.120 4.120 14 C -0.119 4.119 15 C 0.093 3.907 16 C -0.461 4.461 17 H 0.082 0.918 18 C 0.075 3.925 19 N -0.794 5.794 20 Si 0.912 3.088 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.264 1.264 24 C -0.124 4.124 25 C 0.121 3.879 26 C 0.046 3.954 27 N -0.538 5.538 28 C 0.022 3.978 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.284 0.716 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.086 0.914 44 H 0.022 0.978 45 H 0.067 0.933 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.916 7.347 -9.803 14.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.035 4.035 3 H 0.064 0.936 4 C 0.059 3.941 5 H 0.100 0.900 6 C -0.244 4.244 7 N -0.835 5.835 8 S 2.784 3.216 9 O -0.965 6.965 10 O -0.961 6.961 11 C -0.722 4.722 12 C -0.174 4.174 13 C -0.139 4.139 14 C -0.139 4.139 15 C 0.089 3.911 16 C -0.490 4.490 17 H 0.100 0.900 18 C -0.143 4.143 19 N -0.419 5.419 20 Si 0.736 3.264 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.188 1.188 24 C -0.146 4.146 25 C -0.004 4.004 26 C -0.083 4.083 27 N -0.263 5.263 28 C -0.126 4.126 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.128 0.872 36 H 0.116 0.884 37 H 0.143 0.857 38 H 0.095 0.905 39 H 0.128 0.872 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.055 0.945 43 H 0.105 0.895 44 H 0.041 0.959 45 H 0.085 0.915 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.742 7.473 -9.650 14.454 hybrid contribution 0.621 -0.612 0.323 0.929 sum -7.122 6.861 -9.327 13.594 Atomic orbital electron populations 1.21946 0.93698 1.02940 1.02075 1.22043 0.95596 0.95680 0.90193 0.93609 1.21051 0.78887 0.99778 0.94360 0.89992 1.22889 1.01986 1.02596 0.96971 1.57871 1.16080 1.79998 1.29597 1.01858 0.72020 0.74869 0.72888 1.93484 1.37252 1.86759 1.79018 1.93602 1.73749 1.53114 1.75596 1.29799 1.07348 1.19310 1.15757 1.20176 0.99639 0.99871 0.97686 1.20808 0.99080 0.95391 0.98652 1.21644 0.96102 0.97995 0.98139 1.17675 0.92324 0.91325 0.89756 1.19593 1.02148 0.95042 1.32224 0.89960 1.25927 0.96610 0.98949 0.92777 1.69772 1.21055 1.20192 1.30914 0.86295 0.81519 0.78658 0.79919 1.18687 1.20235 1.18809 1.20753 0.97899 0.96120 0.99804 1.21528 0.98473 0.98296 0.82141 1.22448 0.87450 0.99421 0.99025 1.61896 1.06528 1.55634 1.02197 1.22424 1.00575 0.97249 0.92316 0.91465 0.92334 0.91423 0.91696 0.89636 0.89533 0.87208 0.88390 0.85700 0.90528 0.87197 0.88250 0.90402 0.94464 0.89539 0.95905 0.91467 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.51 37.16 0.32 -1.09 16 2 C 0.07 0.90 2.06 -67.59 -0.14 0.76 16 3 H 0.05 0.59 8.10 -51.93 -0.42 0.16 16 4 C 0.17 2.35 3.13 -67.49 -0.21 2.14 16 5 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 6 C -0.19 -2.67 7.11 37.16 0.26 -2.41 16 7 N -1.00 -16.01 3.33 -106.20 -0.35 -16.37 16 8 S 2.68 51.74 5.30 -107.50 -0.57 51.17 16 9 O -0.97 -20.75 15.73 -57.17 -0.90 -21.64 16 10 O -0.97 -19.12 12.58 -57.17 -0.72 -19.84 16 11 C -0.63 -13.93 5.96 -39.66 -0.24 -14.16 16 12 C -0.15 -3.31 8.94 -39.29 -0.35 -3.66 16 13 C -0.12 -2.69 10.02 -39.66 -0.40 -3.09 16 14 C -0.12 -2.97 8.70 -38.87 -0.34 -3.31 16 15 C 0.09 2.40 5.58 -106.82 -0.60 1.81 16 16 C -0.46 -11.85 9.06 -37.74 -0.34 -12.19 16 17 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 18 C 0.08 1.82 5.15 -17.34 -0.09 1.73 16 19 N -0.79 -19.61 10.93 55.55 0.61 -19.00 16 20 Si 0.91 18.05 29.59 -169.99 -5.03 13.02 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 24 C -0.12 -3.02 9.26 -38.88 -0.36 -3.38 16 25 C 0.12 1.72 6.68 -3.60 -0.02 1.70 16 26 C 0.05 0.55 5.62 -3.70 -0.02 0.52 16 27 N -0.54 -6.26 4.73 -234.59 -1.11 -7.37 16 28 C 0.02 0.20 9.01 60.06 0.54 0.74 16 29 H 0.07 0.59 6.88 -51.93 -0.36 0.23 16 30 H 0.06 0.48 6.33 -51.93 -0.33 0.15 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.75 7.15 -51.93 -0.37 0.38 16 33 H 0.09 1.40 2.92 -51.92 -0.15 1.25 16 34 H 0.09 1.30 6.73 -51.93 -0.35 0.95 16 35 H 0.11 2.11 5.49 -52.49 -0.29 1.83 16 36 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 37 H 0.13 3.16 6.14 -52.48 -0.32 2.84 16 38 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 39 H 0.11 2.56 7.60 -52.49 -0.40 2.16 16 40 H 0.10 1.43 6.80 -51.93 -0.35 1.07 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.84 8.06 -51.93 -0.42 0.42 16 44 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 46 H 0.07 0.59 6.21 -51.93 -0.32 0.27 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -29.33 359.75 -11.22 -40.55 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.59 Total: 7.94 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: -1.98 Total: -33.88 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.86 Total: -42.74 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -1.62 Total: -41.49 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Atomic # 16 Polarization: 51.74 SS G_CDS: -0.57 Total: 51.17 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.33 -11.22 -40.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.923 kcal (2) G-P(sol) polarization free energy of solvation -29.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds