Wall clock time and date at job start Sat Apr 11 2020 05:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.42279 * 2 1 4 4 C 1.54903 * 110.37294 * 122.31728 * 2 1 3 5 5 C 1.55141 * 101.65713 * 155.89833 * 4 2 1 6 6 C 1.54319 * 103.01529 * 324.34748 * 5 4 2 7 7 N 1.47437 * 107.23373 * 22.28301 * 6 5 4 8 8 C 1.46897 * 111.00242 * 123.25880 * 7 6 5 9 9 C 1.53003 * 109.47161 * 69.86825 * 8 7 6 10 10 N 1.46499 * 109.47301 * 180.02562 * 9 8 7 11 11 S 1.65601 * 120.00251 * 165.00437 * 10 9 8 12 12 O 1.42102 * 106.39988 * 311.45977 * 11 10 9 13 13 O 1.42101 * 106.40005 * 178.53928 * 11 10 9 14 14 C 1.76198 * 107.21726 * 65.00027 * 11 10 9 15 15 C 1.38661 * 119.87203 * 270.02240 * 14 11 10 16 16 C 1.38617 * 120.49845 * 179.97438 * 15 14 11 17 17 C 1.37635 * 120.24688 * 359.76261 * 16 15 14 18 18 C 1.40698 * 119.74536 * 0.48871 * 17 16 15 19 19 C 1.41401 * 120.24020 * 179.76297 * 18 17 16 20 20 H 1.08000 * 119.99564 * 154.48498 * 19 18 17 21 21 C 1.39942 * 120.00430 * 334.49331 * 19 18 17 22 22 N 1.30828 * 119.99529 * 334.67799 * 21 19 18 23 23 Si 1.86797 * 120.00385 * 154.68030 * 21 19 18 24 24 H 1.48487 * 109.47351 * 179.97438 * 23 21 19 25 25 H 1.48504 * 109.46838 * 300.00052 * 23 21 19 26 26 H 1.48504 * 109.47085 * 59.99686 * 23 21 19 27 27 C 1.37591 * 119.87821 * 90.00508 * 14 11 10 28 28 H 1.08999 * 109.47527 * 182.30858 * 1 2 3 29 29 H 1.08998 * 109.46987 * 302.31356 * 1 2 3 30 30 H 1.09004 * 109.46864 * 62.30805 * 1 2 3 31 31 H 1.09002 * 110.99616 * 37.80314 * 4 2 1 32 32 H 1.09002 * 111.02472 * 274.00327 * 4 2 1 33 33 H 1.08996 * 110.71053 * 205.96255 * 5 4 2 34 34 H 1.09006 * 110.70130 * 82.72629 * 5 4 2 35 35 H 1.08997 * 109.89053 * 262.87377 * 6 5 4 36 36 H 1.09001 * 109.88769 * 141.68528 * 6 5 4 37 37 H 1.08998 * 109.47227 * 309.87010 * 8 7 6 38 38 H 1.08996 * 109.47270 * 189.87206 * 8 7 6 39 39 H 1.09002 * 109.46958 * 60.00734 * 9 8 7 40 40 H 1.08996 * 109.47340 * 300.00338 * 9 8 7 41 41 H 0.97007 * 120.00023 * 344.99985 * 10 9 8 42 42 H 1.07996 * 119.75212 * 359.97438 * 15 14 11 43 43 H 1.07998 * 119.87260 * 180.02562 * 16 15 14 44 44 H 1.08004 * 120.12308 * 180.27890 * 17 16 15 45 45 H 0.96997 * 120.00451 * 354.20262 * 22 21 19 46 46 H 1.08001 * 120.12852 * 0.02562 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0692 -0.7763 1.2272 5 6 3.4785 -1.1996 0.7358 6 6 3.2535 -1.4807 -0.7648 7 7 2.0447 -0.7408 -1.1713 8 6 2.3357 0.1718 -2.2850 9 6 2.6070 -0.6408 -3.5527 10 7 2.8978 0.2692 -4.6633 11 16 3.5865 -0.3129 -6.0523 12 8 4.6923 -1.1090 -5.6487 13 8 3.7069 0.7943 -6.9349 14 6 2.4241 -1.4128 -6.7895 15 6 2.4422 -2.7594 -6.4594 16 6 1.5334 -3.6362 -7.0311 17 6 0.5986 -3.1767 -7.9308 18 6 0.5744 -1.8132 -8.2772 19 6 -0.3782 -1.3308 -9.2041 20 1 -0.6843 -0.2955 -9.1743 21 6 -0.9245 -2.1947 -10.1599 22 7 -0.2570 -3.2529 -10.5425 23 14 -2.6066 -1.8372 -10.8894 24 1 -2.9552 -2.8948 -11.8715 25 1 -3.6213 -1.8136 -9.8053 26 1 -2.5801 -0.5183 -11.5714 27 6 1.5017 -0.9323 -7.6903 28 1 -0.3634 -1.0268 0.0414 29 1 -0.3633 0.5493 0.8685 30 1 -0.3633 0.4776 -0.9100 31 1 1.4514 -1.6488 1.4397 32 1 2.1388 -0.1278 2.1005 33 1 3.8119 -2.1005 1.2509 34 1 4.1941 -0.3888 0.8729 35 1 3.1055 -2.5488 -0.9239 36 1 4.1118 -1.1334 -1.3399 37 1 3.2131 0.7718 -2.0434 38 1 1.4811 0.8279 -2.4499 39 1 1.7296 -1.2408 -3.7944 40 1 3.4616 -1.2970 -3.3878 41 1 2.6869 1.2129 -4.5851 42 1 3.1698 -3.1280 -5.7515 43 1 1.5563 -4.6830 -6.7664 44 1 -0.1114 -3.8608 -8.3716 45 1 0.6497 -3.3943 -10.2283 46 1 1.4895 0.1169 -7.9461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795171257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:19 Heat of formation + Delta-G solvation = -67.563533 kcal Electronic energy + Delta-G solvation = -27148.986835 eV Core-core repulsion = 23357.326057 eV Total energy + Delta-G solvation = -3791.660778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.54239 -37.86281 -36.75860 -35.63620 -35.36745 -34.06922 -32.09644 -31.61284 -30.07979 -29.67246 -27.31503 -25.83699 -25.30217 -22.90569 -21.93512 -21.22499 -20.98946 -20.27708 -19.18298 -18.37609 -17.19212 -16.48132 -16.25753 -16.14319 -15.47514 -15.00874 -14.65357 -14.58573 -14.23836 -14.16112 -13.90365 -13.71949 -13.45623 -13.30297 -12.61900 -12.56019 -12.44496 -12.15731 -12.15329 -11.96427 -11.63663 -11.57852 -11.50654 -11.42304 -11.35743 -11.28918 -11.12223 -11.05828 -10.96957 -10.85689 -10.69219 -10.47273 -9.85400 -9.68218 -9.28424 -9.11694 -8.56709 -8.24191 -7.87241 -7.33486 -4.61140 0.93517 2.04068 2.58963 3.09541 3.15440 3.29862 3.35049 3.80681 3.93038 4.16107 4.34255 4.34739 4.39413 4.66623 4.81601 4.90955 4.96972 5.03862 5.11553 5.19887 5.22139 5.34785 5.42409 5.45629 5.55594 5.59796 5.65879 5.68266 5.80291 5.90257 5.92117 5.98015 6.07369 6.08625 6.11006 6.46720 6.56773 6.73446 6.76304 6.84325 7.03293 7.13761 7.26300 7.48369 7.55532 7.63957 7.90914 8.02269 8.51817 8.68215 9.91313 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013564 B = 0.002901 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.747137 B = 9650.754992 C =10575.460074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.068 3.932 3 H 0.054 0.946 4 C -0.125 4.125 5 C -0.143 4.143 6 C 0.035 3.965 7 N -0.523 5.523 8 C 0.047 3.953 9 C 0.123 3.877 10 N -1.122 6.122 11 S 2.692 3.308 12 O -0.973 6.973 13 O -0.971 6.971 14 C -0.620 4.620 15 C -0.164 4.164 16 C -0.098 4.098 17 C -0.177 4.177 18 C 0.078 3.922 19 C -0.519 4.519 20 H 0.080 0.920 21 C 0.038 3.962 22 N -0.793 5.793 23 Si 1.067 2.933 24 H -0.273 1.273 25 H -0.273 1.273 26 H -0.274 1.274 27 C -0.123 4.123 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.042 0.958 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.413 0.587 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.112 0.888 45 H 0.299 0.701 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.854 4.725 19.241 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.040 4.040 3 H 0.072 0.928 4 C -0.163 4.163 5 C -0.181 4.181 6 C -0.092 4.092 7 N -0.249 5.249 8 C -0.083 4.083 9 C -0.003 4.003 10 N -0.880 5.880 11 S 2.787 3.213 12 O -0.963 6.963 13 O -0.962 6.962 14 C -0.712 4.712 15 C -0.185 4.185 16 C -0.118 4.118 17 C -0.197 4.197 18 C 0.074 3.926 19 C -0.546 4.546 20 H 0.098 0.902 21 C -0.184 4.184 22 N -0.416 5.416 23 Si 0.890 3.110 24 H -0.198 1.198 25 H -0.199 1.199 26 H -0.200 1.200 27 C -0.144 4.144 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.246 0.754 42 H 0.126 0.874 43 H 0.118 0.882 44 H 0.130 0.870 45 H 0.113 0.887 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.268 3.767 17.683 18.124 hybrid contribution 1.076 1.128 1.211 1.974 sum 2.344 4.896 18.894 19.658 Atomic orbital electron populations 1.21706 0.93710 1.02561 1.01404 1.22568 0.96238 0.95917 0.89276 0.92799 1.22760 0.96122 1.00398 0.96999 1.22788 0.97277 1.01777 0.96308 1.22939 0.91513 1.00096 0.94666 1.63394 1.29006 1.25980 1.06480 1.22406 1.00616 0.94421 0.90844 1.21167 1.02096 0.91857 0.85209 1.55529 1.82775 1.18371 1.31364 1.01605 0.74074 0.73555 0.72058 1.93512 1.49551 1.70939 1.82341 1.93546 1.86452 1.52680 1.63490 1.29802 1.18249 1.09333 1.13819 1.20022 1.02218 0.91494 1.04733 1.20726 0.95995 0.97683 0.97378 1.21438 1.00566 0.96706 1.00970 1.17738 0.90921 0.91675 0.92263 1.20603 1.20738 0.99660 1.13633 0.90171 1.27098 1.05027 0.91908 0.94377 1.70479 1.12526 1.24553 1.34047 0.83607 0.73245 0.77171 0.76984 1.19756 1.19877 1.19960 1.20738 0.94923 0.99268 0.99483 0.91799 0.92550 0.92442 0.90419 0.90998 0.90647 0.91615 0.89999 0.92124 0.93988 0.90087 0.90360 0.90503 0.75418 0.87426 0.88195 0.87035 0.88737 0.86957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.59 37.16 0.36 -0.76 16 2 C 0.07 0.58 3.01 -66.19 -0.20 0.38 16 3 H 0.05 0.45 7.81 -51.93 -0.41 0.04 16 4 C -0.12 -0.90 6.49 -24.59 -0.16 -1.06 16 5 C -0.14 -1.07 6.94 -24.91 -0.17 -1.24 16 6 C 0.04 0.33 6.21 -2.84 -0.02 0.32 16 7 N -0.52 -5.35 4.81 -223.40 -1.07 -6.43 16 8 C 0.05 0.49 4.68 -3.82 -0.02 0.47 16 9 C 0.12 1.60 6.25 -4.04 -0.03 1.57 16 10 N -1.12 -15.69 6.00 -10.61 -0.06 -15.76 16 11 S 2.69 50.01 5.73 -107.50 -0.62 49.40 16 12 O -0.97 -19.71 16.74 -57.17 -0.96 -20.66 16 13 O -0.97 -20.38 17.27 -57.17 -0.99 -21.37 16 14 C -0.62 -13.47 5.94 -39.66 -0.24 -13.70 16 15 C -0.16 -3.51 9.53 -39.29 -0.37 -3.89 16 16 C -0.10 -2.18 10.02 -39.66 -0.40 -2.58 16 17 C -0.18 -4.35 7.95 -38.87 -0.31 -4.66 16 18 C 0.08 2.01 5.30 -106.82 -0.57 1.44 16 19 C -0.52 -13.40 8.99 -37.74 -0.34 -13.74 16 20 H 0.08 2.00 7.96 -52.49 -0.42 1.58 16 21 C 0.04 0.94 4.94 -17.34 -0.09 0.85 16 22 N -0.79 -20.58 12.32 55.55 0.68 -19.89 16 23 Si 1.07 20.91 30.00 -169.99 -5.10 15.81 16 24 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 26 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 27 C -0.12 -2.96 9.26 -38.88 -0.36 -3.32 16 28 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.57 8.05 -51.93 -0.42 0.15 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.59 6.91 -51.93 -0.36 0.23 16 37 H 0.04 0.41 7.96 -51.93 -0.41 0.00 16 38 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 1.01 6.75 -51.93 -0.35 0.66 16 41 H 0.41 4.73 8.65 -34.47 -0.30 4.43 16 42 H 0.11 2.09 7.60 -52.49 -0.40 1.69 16 43 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 44 H 0.11 2.79 6.49 -52.48 -0.34 2.45 16 45 H 0.30 7.97 6.68 -40.82 -0.27 7.69 16 46 H 0.11 2.61 7.60 -52.49 -0.40 2.21 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -30.73 383.00 -12.34 -43.07 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -7.09 Total: 9.97 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: -2.90 Total: -39.91 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -0.45 Total: -42.08 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -1.94 Total: -42.03 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.10 Total: 15.81 kcal Atomic # 16 Polarization: 50.01 SS G_CDS: -0.62 Total: 49.40 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.73 -12.34 -43.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795171257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.493 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds