Wall clock time and date at job start Sat Apr 11 2020 05:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.42279 * 2 1 4 4 C 1.54903 * 110.37294 * 122.31728 * 2 1 3 5 5 C 1.55141 * 101.65713 * 155.89833 * 4 2 1 6 6 C 1.54319 * 103.01529 * 324.34748 * 5 4 2 7 7 N 1.47437 * 107.23373 * 22.28301 * 6 5 4 8 8 C 1.46897 * 111.00242 * 123.25880 * 7 6 5 9 9 C 1.53003 * 109.47161 * 69.86825 * 8 7 6 10 10 N 1.46499 * 109.47301 * 180.02562 * 9 8 7 11 11 S 1.65601 * 120.00251 * 165.00437 * 10 9 8 12 12 O 1.42102 * 106.39988 * 311.45977 * 11 10 9 13 13 O 1.42101 * 106.40005 * 178.53928 * 11 10 9 14 14 C 1.76198 * 107.21726 * 65.00027 * 11 10 9 15 15 C 1.38661 * 119.87203 * 270.02240 * 14 11 10 16 16 C 1.38617 * 120.49845 * 179.97438 * 15 14 11 17 17 C 1.37635 * 120.24688 * 359.76261 * 16 15 14 18 18 C 1.40698 * 119.74536 * 0.48871 * 17 16 15 19 19 C 1.41401 * 120.24020 * 179.76297 * 18 17 16 20 20 H 1.08000 * 119.99564 * 154.48498 * 19 18 17 21 21 C 1.39942 * 120.00430 * 334.49331 * 19 18 17 22 22 N 1.30828 * 119.99529 * 334.67799 * 21 19 18 23 23 Si 1.86797 * 120.00385 * 154.68030 * 21 19 18 24 24 H 1.48487 * 109.47351 * 179.97438 * 23 21 19 25 25 H 1.48504 * 109.46838 * 300.00052 * 23 21 19 26 26 H 1.48504 * 109.47085 * 59.99686 * 23 21 19 27 27 C 1.37591 * 119.87821 * 90.00508 * 14 11 10 28 28 H 1.08999 * 109.47527 * 182.30858 * 1 2 3 29 29 H 1.08998 * 109.46987 * 302.31356 * 1 2 3 30 30 H 1.09004 * 109.46864 * 62.30805 * 1 2 3 31 31 H 1.09002 * 110.99616 * 37.80314 * 4 2 1 32 32 H 1.09002 * 111.02472 * 274.00327 * 4 2 1 33 33 H 1.08996 * 110.71053 * 205.96255 * 5 4 2 34 34 H 1.09006 * 110.70130 * 82.72629 * 5 4 2 35 35 H 1.08997 * 109.89053 * 262.87377 * 6 5 4 36 36 H 1.09001 * 109.88769 * 141.68528 * 6 5 4 37 37 H 1.08998 * 109.47227 * 309.87010 * 8 7 6 38 38 H 1.08996 * 109.47270 * 189.87206 * 8 7 6 39 39 H 1.09002 * 109.46958 * 60.00734 * 9 8 7 40 40 H 1.08996 * 109.47340 * 300.00338 * 9 8 7 41 41 H 0.97007 * 120.00023 * 344.99985 * 10 9 8 42 42 H 1.07996 * 119.75212 * 359.97438 * 15 14 11 43 43 H 1.07998 * 119.87260 * 180.02562 * 16 15 14 44 44 H 1.08004 * 120.12308 * 180.27890 * 17 16 15 45 45 H 0.96997 * 120.00451 * 354.20262 * 22 21 19 46 46 H 1.08001 * 120.12852 * 0.02562 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0692 -0.7763 1.2272 5 6 3.4785 -1.1996 0.7358 6 6 3.2535 -1.4807 -0.7648 7 7 2.0447 -0.7408 -1.1713 8 6 2.3357 0.1718 -2.2850 9 6 2.6070 -0.6408 -3.5527 10 7 2.8978 0.2692 -4.6633 11 16 3.5865 -0.3129 -6.0523 12 8 4.6923 -1.1090 -5.6487 13 8 3.7069 0.7943 -6.9349 14 6 2.4241 -1.4128 -6.7895 15 6 2.4422 -2.7594 -6.4594 16 6 1.5334 -3.6362 -7.0311 17 6 0.5986 -3.1767 -7.9308 18 6 0.5744 -1.8132 -8.2772 19 6 -0.3782 -1.3308 -9.2041 20 1 -0.6843 -0.2955 -9.1743 21 6 -0.9245 -2.1947 -10.1599 22 7 -0.2570 -3.2529 -10.5425 23 14 -2.6066 -1.8372 -10.8894 24 1 -2.9552 -2.8948 -11.8715 25 1 -3.6213 -1.8136 -9.8053 26 1 -2.5801 -0.5183 -11.5714 27 6 1.5017 -0.9323 -7.6903 28 1 -0.3634 -1.0268 0.0414 29 1 -0.3633 0.5493 0.8685 30 1 -0.3633 0.4776 -0.9100 31 1 1.4514 -1.6488 1.4397 32 1 2.1388 -0.1278 2.1005 33 1 3.8119 -2.1005 1.2509 34 1 4.1941 -0.3888 0.8729 35 1 3.1055 -2.5488 -0.9239 36 1 4.1118 -1.1334 -1.3399 37 1 3.2131 0.7718 -2.0434 38 1 1.4811 0.8279 -2.4499 39 1 1.7296 -1.2408 -3.7944 40 1 3.4616 -1.2970 -3.3878 41 1 2.6869 1.2129 -4.5851 42 1 3.1698 -3.1280 -5.7515 43 1 1.5563 -4.6830 -6.7664 44 1 -0.1114 -3.8608 -8.3716 45 1 0.6497 -3.3943 -10.2283 46 1 1.4895 0.1169 -7.9461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795171257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:18 Heat of formation + Delta-G solvation = -88.223634 kcal Electronic energy + Delta-G solvation = -27149.882724 eV Core-core repulsion = 23357.326057 eV Total energy + Delta-G solvation = -3792.556667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.25100 -39.70424 -38.36509 -37.00674 -36.70978 -35.92365 -32.93575 -32.25071 -31.91885 -31.51780 -28.23408 -27.19932 -26.50881 -23.86361 -23.64484 -23.03668 -21.69235 -21.05898 -20.68813 -20.03709 -18.62971 -17.96328 -17.39965 -17.19377 -16.77859 -16.50933 -16.14673 -15.87220 -15.52296 -15.49203 -15.14924 -14.85236 -14.53572 -14.43205 -14.06564 -14.00473 -13.52601 -13.36504 -13.28604 -13.23815 -13.18018 -13.10535 -13.05352 -12.78415 -12.74929 -12.42112 -12.15809 -12.03463 -11.98380 -11.94350 -11.59173 -11.55454 -11.49546 -11.47110 -10.98222 -10.52592 -10.07507 -9.76785 -9.30684 -9.26745 -6.58067 -0.59859 0.22379 0.74636 1.49664 1.58109 1.78872 1.99894 2.30009 2.47477 2.69394 2.97991 3.32343 3.39776 3.68444 3.72218 3.95050 4.02997 4.15904 4.16801 4.29707 4.33966 4.45965 4.47361 4.50394 4.56511 4.60677 4.74557 4.78991 4.82743 4.91506 4.93804 4.97728 5.02535 5.03097 5.13217 5.18064 5.20560 5.37440 5.41233 5.43523 5.56600 5.67800 5.70582 5.99941 6.00761 6.06429 6.13575 6.14791 6.61335 6.78291 7.95297 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013564 B = 0.002901 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.747137 B = 9650.754992 C =10575.460074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.065 3.935 3 H 0.060 0.940 4 C -0.120 4.120 5 C -0.139 4.139 6 C 0.030 3.970 7 N -0.538 5.538 8 C 0.053 3.947 9 C 0.120 3.880 10 N -1.103 6.103 11 S 2.724 3.276 12 O -0.984 6.984 13 O -0.994 6.994 14 C -0.628 4.628 15 C -0.157 4.157 16 C -0.101 4.101 17 C -0.192 4.192 18 C 0.051 3.949 19 C -0.555 4.555 20 H 0.077 0.923 21 C 0.004 3.996 22 N -0.815 5.815 23 Si 1.118 2.882 24 H -0.271 1.271 25 H -0.260 1.260 26 H -0.258 1.258 27 C -0.143 4.143 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.427 0.573 42 H 0.135 0.865 43 H 0.131 0.869 44 H 0.100 0.900 45 H 0.283 0.717 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.989 5.320 21.429 22.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.043 4.043 3 H 0.078 0.922 4 C -0.158 4.158 5 C -0.177 4.177 6 C -0.098 4.098 7 N -0.264 5.264 8 C -0.077 4.077 9 C -0.007 4.007 10 N -0.866 5.866 11 S 2.815 3.185 12 O -0.974 6.974 13 O -0.984 6.984 14 C -0.717 4.717 15 C -0.177 4.177 16 C -0.120 4.120 17 C -0.212 4.212 18 C 0.047 3.953 19 C -0.583 4.583 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.438 5.438 23 Si 0.934 3.066 24 H -0.195 1.195 25 H -0.185 1.185 26 H -0.183 1.183 27 C -0.164 4.164 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.264 0.736 42 H 0.152 0.848 43 H 0.149 0.851 44 H 0.118 0.882 45 H 0.095 0.905 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.398 4.355 19.872 20.392 hybrid contribution 1.173 0.939 0.718 1.665 sum 2.572 5.294 20.590 21.415 Atomic orbital electron populations 1.21693 0.93663 1.02096 1.01698 1.22657 0.96263 0.96238 0.89152 0.92213 1.22753 0.95712 1.00428 0.96956 1.22770 0.97592 1.02438 0.94894 1.22980 0.91075 0.99636 0.96088 1.63371 1.29528 1.26392 1.07104 1.22316 1.01417 0.94159 0.89799 1.21302 1.01613 0.92012 0.85738 1.55103 1.82293 1.19344 1.29897 1.00693 0.73210 0.72411 0.72156 1.93497 1.49810 1.71453 1.82598 1.93513 1.86649 1.53073 1.65163 1.30348 1.17803 1.10488 1.13026 1.20451 1.01839 0.91350 1.04090 1.21092 0.95137 0.99501 0.96313 1.21460 1.01463 0.96271 1.01980 1.18085 0.91604 0.92665 0.92902 1.20821 1.22437 1.00038 1.14972 0.90440 1.28505 1.07748 0.90969 0.93974 1.70597 1.12025 1.25878 1.35279 0.82997 0.69172 0.77669 0.76729 1.19535 1.18500 1.18265 1.20815 0.95740 0.99208 1.00648 0.92738 0.90910 0.93387 0.90679 0.89374 0.89756 0.91029 0.90662 0.92528 0.92877 0.89401 0.91440 0.90501 0.73593 0.84762 0.85134 0.88225 0.90471 0.87093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.59 71.98 0.69 -1.28 16 2 C 0.06 0.96 3.01 45.38 0.14 1.10 16 3 H 0.06 0.83 7.81 -2.39 -0.02 0.81 16 4 C -0.12 -1.45 6.49 31.98 0.21 -1.24 16 5 C -0.14 -1.75 6.94 31.78 0.22 -1.53 16 6 C 0.03 0.51 6.21 86.65 0.54 1.05 16 7 N -0.54 -10.06 4.81 -860.69 -4.14 -14.20 16 8 C 0.05 1.00 4.68 86.30 0.40 1.40 16 9 C 0.12 2.89 6.25 86.38 0.54 3.43 16 10 N -1.10 -28.91 6.00 -187.49 -1.12 -30.03 16 11 S 2.72 97.76 5.73 -56.49 -0.32 97.44 16 12 O -0.98 -37.95 16.74 -128.00 -2.14 -40.09 16 13 O -0.99 -40.91 17.27 -128.00 -2.21 -43.12 16 14 C -0.63 -26.99 5.94 22.22 0.13 -26.86 16 15 C -0.16 -6.54 9.53 22.46 0.21 -6.32 16 16 C -0.10 -4.44 10.02 22.22 0.22 -4.21 16 17 C -0.19 -9.66 7.95 22.73 0.18 -9.48 16 18 C 0.05 2.71 5.30 -21.29 -0.11 2.59 16 19 C -0.55 -29.66 8.99 23.46 0.21 -29.45 16 20 H 0.08 4.02 7.96 -2.91 -0.02 4.00 16 21 C 0.00 0.21 4.94 85.26 0.42 0.63 16 22 N -0.81 -43.61 12.32 21.83 0.27 -43.34 16 23 Si 1.12 42.33 30.00 68.60 2.06 44.39 16 24 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 25 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 26 H -0.26 -9.04 7.11 99.48 0.71 -8.34 16 27 C -0.14 -7.02 9.26 22.73 0.21 -6.81 16 28 H 0.05 0.89 8.13 -2.39 -0.02 0.87 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.78 8.14 -2.38 -0.02 0.77 16 31 H 0.07 0.95 8.05 -2.39 -0.02 0.93 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.00 6.91 -2.39 -0.02 0.98 16 37 H 0.05 0.90 7.96 -2.39 -0.02 0.88 16 38 H 0.09 1.54 8.07 -2.39 -0.02 1.52 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.08 1.88 6.75 -2.39 -0.02 1.87 16 41 H 0.43 8.90 8.65 -96.74 -0.84 8.07 16 42 H 0.13 4.86 7.60 -2.91 -0.02 4.84 16 43 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 44 H 0.10 5.17 6.49 -2.91 -0.02 5.15 16 45 H 0.28 15.77 6.68 -92.71 -0.62 15.15 16 46 H 0.11 5.32 7.60 -2.91 -0.02 5.29 16 Total: -1.00 -66.75 383.00 -3.11 -69.86 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: 0.29 Total: 36.07 kcal Atomic # 6 Polarization: -81.19 SS G_CDS: 4.22 Total: -76.98 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -5.00 Total: -87.57 kcal Atomic # 8 Polarization: -78.86 SS G_CDS: -4.35 Total: -83.21 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.06 Total: 44.39 kcal Atomic # 16 Polarization: 97.76 SS G_CDS: -0.32 Total: 97.44 kcal Total: -66.75 -3.11 -69.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795171257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.364 kcal (2) G-P(sol) polarization free energy of solvation -66.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds