Wall clock time and date at job start Sat Apr 11 2020 05:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.73055 * 2 1 4 4 C 1.54939 * 110.67053 * 236.89516 * 2 1 3 5 5 C 1.54587 * 102.92402 * 204.15158 * 4 2 1 6 6 C 1.53996 * 105.14052 * 21.96230 * 5 4 2 7 7 N 1.47903 * 107.05601 * 1.22056 * 6 5 4 8 8 C 1.46896 * 111.00089 * 214.15497 * 7 6 5 9 9 C 1.53003 * 109.47213 * 293.85631 * 8 7 6 10 10 N 1.46497 * 109.46935 * 183.55189 * 9 8 7 11 11 S 1.65605 * 120.00045 * 164.37271 * 10 9 8 12 12 O 1.42093 * 106.40515 * 180.45299 * 11 10 9 13 13 O 1.42109 * 106.40041 * 313.37472 * 11 10 9 14 14 C 1.76201 * 107.21746 * 66.91001 * 11 10 9 15 15 C 1.37640 * 120.12387 * 112.00518 * 14 11 10 16 16 C 1.38611 * 120.24470 * 179.97438 * 15 14 11 17 17 C 1.38655 * 120.50581 * 0.02562 * 16 15 14 18 18 C 1.37604 * 120.24553 * 0.02818 * 17 16 15 19 19 C 1.40697 * 120.12892 * 291.72817 * 14 11 10 20 20 C 1.41393 * 120.24301 * 359.97438 * 19 14 11 21 21 H 1.07999 * 120.00064 * 328.28297 * 20 19 14 22 22 C 1.39948 * 120.00085 * 148.29289 * 20 19 14 23 23 N 1.30820 * 120.00257 * 171.06322 * 22 20 19 24 24 Si 1.86797 * 119.99625 * 351.05807 * 22 20 19 25 25 H 1.48503 * 109.47294 * 92.00123 * 24 22 20 26 26 H 1.48504 * 109.47156 * 211.99956 * 24 22 20 27 27 H 1.48498 * 109.47732 * 332.00070 * 24 22 20 28 28 H 1.08993 * 109.47455 * 296.91016 * 1 2 3 29 29 H 1.09005 * 109.46597 * 56.90933 * 1 2 3 30 30 H 1.08999 * 109.47412 * 176.90148 * 1 2 3 31 31 H 1.09007 * 110.71536 * 85.79595 * 4 2 1 32 32 H 1.08998 * 110.88000 * 322.58810 * 4 2 1 33 33 H 1.08999 * 110.31605 * 263.04199 * 5 4 2 34 34 H 1.09007 * 110.30860 * 140.87275 * 5 4 2 35 35 H 1.09003 * 109.91568 * 241.86918 * 6 5 4 36 36 H 1.08994 * 109.91981 * 120.57377 * 6 5 4 37 37 H 1.09006 * 109.46874 * 53.85181 * 8 7 6 38 38 H 1.08996 * 109.47222 * 173.85230 * 8 7 6 39 39 H 1.09000 * 109.46937 * 303.54938 * 9 8 7 40 40 H 1.08997 * 109.47120 * 63.55607 * 9 8 7 41 41 H 0.96995 * 120.00540 * 344.37487 * 10 9 8 42 42 H 1.07996 * 119.87883 * 359.97438 * 15 14 11 43 43 H 1.08007 * 119.74825 * 180.02562 * 16 15 14 44 44 H 1.07998 * 119.87868 * 180.02562 * 17 16 15 45 45 H 1.07996 * 120.12209 * 179.97438 * 18 17 16 46 46 H 0.97000 * 120.00614 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0769 -0.7918 -1.2143 5 6 3.4853 -1.2198 -0.7421 6 6 3.4278 -1.1647 0.7958 7 7 2.0541 -0.7588 1.1643 8 6 2.0578 0.0721 2.3758 9 6 2.5194 -0.7675 3.5687 10 7 2.4423 0.0366 4.7908 11 16 2.5033 -0.7007 6.2724 12 8 2.3955 0.3340 7.2403 13 8 1.6081 -1.8025 6.2094 14 6 4.1187 -1.3817 6.4498 15 6 4.9902 -0.8596 7.3785 16 6 6.2614 -1.3937 7.5206 17 6 6.6702 -2.4575 6.7307 18 6 5.8160 -2.9946 5.7951 19 6 4.5206 -2.4649 5.6469 20 6 3.6316 -3.0134 4.6941 21 1 2.5680 -3.0077 4.8817 22 6 4.1298 -3.5641 3.5078 23 7 3.3330 -4.2256 2.7085 24 14 5.9325 -3.3542 3.0658 25 1 6.7074 -4.5095 3.5856 26 1 6.0755 -3.2864 1.5892 27 1 6.4480 -2.0999 3.6711 28 1 -0.3634 0.4651 0.9163 29 1 -0.3633 0.5611 -0.8610 30 1 -0.3634 -1.0261 -0.0555 31 1 2.1431 -0.1514 -2.0940 32 1 1.4572 -1.6645 -1.4201 33 1 4.2374 -0.5260 -1.1176 34 1 3.7044 -2.2339 -1.0764 35 1 4.1440 -0.4322 1.1681 36 1 3.6484 -2.1480 1.2111 37 1 2.7384 0.9124 2.2379 38 1 1.0514 0.4465 2.5626 39 1 1.8764 -1.6420 3.6680 40 1 3.5486 -1.0893 3.4099 41 1 2.3554 1.0009 4.7322 42 1 4.6826 -0.0308 7.9987 43 1 6.9386 -0.9781 8.2521 44 1 7.6628 -2.8661 6.8503 45 1 6.1366 -3.8228 5.1807 46 1 3.6782 -4.6070 1.8862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867147697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:32 Heat of formation + Delta-G solvation = -50.943027 kcal Electronic energy + Delta-G solvation = -29151.096329 eV Core-core repulsion = 25360.156270 eV Total energy + Delta-G solvation = -3790.940059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.08095 -37.93953 -36.37766 -35.17403 -34.86332 -33.82255 -31.68540 -31.28189 -30.73072 -30.14754 -26.80886 -25.50952 -25.36409 -22.48136 -22.00303 -21.18976 -20.38586 -20.03053 -18.56507 -17.71607 -17.16231 -16.43856 -16.01210 -15.58859 -15.21997 -15.05324 -14.49152 -14.31603 -14.20662 -14.07550 -13.63106 -13.61127 -13.27599 -12.88275 -12.56096 -12.38562 -12.09566 -12.05413 -11.82163 -11.74139 -11.48612 -11.31705 -11.27694 -11.13226 -11.10529 -10.91464 -10.88619 -10.73529 -10.69074 -10.57944 -10.42401 -10.16794 -9.89246 -9.56921 -9.24934 -8.64035 -8.24444 -8.15129 -7.83096 -7.16517 -4.85681 1.48980 2.06683 2.50834 2.90047 2.98453 3.08274 3.72216 3.84537 4.20353 4.30653 4.65866 4.70425 4.79999 5.05718 5.10163 5.27795 5.34458 5.45133 5.49486 5.55413 5.57400 5.72661 5.81988 5.83372 5.84653 5.85740 5.88169 6.00785 6.09139 6.17736 6.23746 6.29039 6.36097 6.37650 6.41821 6.59051 6.62902 6.85751 6.94225 7.06820 7.17154 7.21973 7.33605 7.41000 7.53834 7.67727 7.82421 8.16472 8.31154 8.52417 9.78769 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012270 B = 0.005580 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.490931 B = 5016.304197 C = 6480.152838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.058 3.942 3 H 0.048 0.952 4 C -0.116 4.116 5 C -0.132 4.132 6 C 0.029 3.971 7 N -0.497 5.497 8 C 0.039 3.961 9 C 0.129 3.871 10 N -1.122 6.122 11 S 2.709 3.291 12 O -0.998 6.998 13 O -0.965 6.965 14 C -0.770 4.770 15 C 0.018 3.982 16 C -0.259 4.259 17 C -0.045 4.045 18 C -0.235 4.235 19 C 0.160 3.840 20 C -0.458 4.458 21 H 0.138 0.862 22 C 0.091 3.909 23 N -0.761 5.761 24 Si 0.892 3.108 25 H -0.268 1.268 26 H -0.285 1.285 27 H -0.239 1.239 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.092 0.908 37 H 0.032 0.968 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.404 0.596 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.440 6.748 -8.368 10.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.050 4.050 3 H 0.066 0.934 4 C -0.154 4.154 5 C -0.170 4.170 6 C -0.099 4.099 7 N -0.222 5.222 8 C -0.091 4.091 9 C 0.003 3.997 10 N -0.879 5.879 11 S 2.805 3.195 12 O -0.989 6.989 13 O -0.955 6.955 14 C -0.864 4.864 15 C -0.002 4.002 16 C -0.280 4.280 17 C -0.064 4.064 18 C -0.254 4.254 19 C 0.154 3.846 20 C -0.485 4.485 21 H 0.155 0.845 22 C -0.133 4.133 23 N -0.382 5.382 24 Si 0.719 3.281 25 H -0.194 1.194 26 H -0.212 1.212 27 H -0.162 1.162 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.110 0.890 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.235 0.765 42 H 0.131 0.869 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.121 0.879 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.726 5.891 -7.901 9.882 hybrid contribution 2.323 0.844 -0.607 2.545 sum 1.597 6.734 -8.507 10.967 Atomic orbital electron populations 1.21668 0.93901 1.02603 1.01077 1.22772 0.96013 0.95450 0.90765 0.93415 1.22498 0.96246 1.00047 0.96624 1.22405 0.97120 1.01848 0.95676 1.23016 0.89556 1.02454 0.94841 1.64641 1.19026 1.36654 1.01893 1.22543 1.01070 0.94436 0.91059 1.21649 1.03278 0.93417 0.81344 1.55515 1.92007 1.17469 1.22916 1.00847 0.74765 0.72724 0.71158 1.93454 1.87969 1.58479 1.59023 1.93509 1.63217 1.53159 1.85647 1.29916 1.24531 1.14548 1.17440 1.20389 0.92428 0.94847 0.92549 1.20498 0.97418 1.03588 1.06453 1.20815 0.97122 0.94354 0.94121 1.21180 0.96975 1.03557 1.03701 1.17123 0.91331 0.87150 0.88947 1.20579 0.99022 1.29203 0.99671 0.84455 1.26126 0.99806 0.91458 0.95930 1.69642 1.37839 1.20822 1.09858 0.86669 0.82695 0.81969 0.76801 1.19441 1.21183 1.16206 0.92655 0.92772 0.91595 0.91594 0.90556 0.91987 0.91071 0.94072 0.88952 0.94998 0.90518 0.87922 0.90634 0.76471 0.86864 0.88137 0.88358 0.87861 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 9.50 37.16 0.35 -1.16 16 2 C 0.06 0.73 2.92 -65.79 -0.19 0.54 16 3 H 0.05 0.57 8.02 -51.93 -0.42 0.15 16 4 C -0.12 -1.32 6.50 -24.87 -0.16 -1.49 16 5 C -0.13 -1.68 6.93 -25.38 -0.18 -1.86 16 6 C 0.03 0.46 5.66 -2.75 -0.02 0.44 16 7 N -0.50 -7.70 4.99 -222.63 -1.11 -8.81 16 8 C 0.04 0.60 4.82 -3.82 -0.02 0.58 16 9 C 0.13 2.41 4.31 -4.04 -0.02 2.40 16 10 N -1.12 -20.13 6.00 -10.61 -0.06 -20.19 16 11 S 2.71 58.17 5.44 -107.50 -0.58 57.58 16 12 O -1.00 -22.09 16.97 -57.17 -0.97 -23.06 16 13 O -0.97 -23.65 14.89 -57.17 -0.85 -24.50 16 14 C -0.77 -17.63 5.97 -38.87 -0.23 -17.87 16 15 C 0.02 0.38 9.53 -39.66 -0.38 0.00 16 16 C -0.26 -5.28 10.05 -39.29 -0.39 -5.68 16 17 C -0.05 -0.94 10.02 -39.66 -0.40 -1.34 16 18 C -0.23 -5.38 6.88 -38.87 -0.27 -5.65 16 19 C 0.16 3.84 5.14 -106.83 -0.55 3.29 16 20 C -0.46 -11.18 5.37 -37.74 -0.20 -11.38 16 21 H 0.14 3.64 4.48 -52.49 -0.23 3.41 16 22 C 0.09 2.08 4.14 -17.34 -0.07 2.01 16 23 N -0.76 -17.39 13.32 55.55 0.74 -16.65 16 24 Si 0.89 18.39 23.82 -169.99 -4.05 14.34 16 25 H -0.27 -5.51 6.71 56.52 0.38 -5.13 16 26 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 27 H -0.24 -5.08 6.47 56.52 0.37 -4.72 16 28 H 0.05 0.63 7.34 -51.93 -0.38 0.25 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.80 8.11 -51.93 -0.42 0.37 16 31 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.08 0.89 8.03 -51.93 -0.42 0.47 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.04 0.64 7.63 -51.93 -0.40 0.24 16 36 H 0.09 1.67 6.38 -51.93 -0.33 1.34 16 37 H 0.03 0.45 7.92 -51.93 -0.41 0.04 16 38 H 0.08 1.09 7.29 -51.93 -0.38 0.71 16 39 H 0.10 2.22 6.23 -51.93 -0.32 1.90 16 40 H 0.08 1.52 5.41 -51.93 -0.28 1.24 16 41 H 0.40 5.90 8.66 -34.47 -0.30 5.60 16 42 H 0.11 2.22 7.32 -52.49 -0.38 1.84 16 43 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 44 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 45 H 0.10 2.31 4.19 -52.49 -0.22 2.09 16 46 H 0.29 6.03 8.30 -40.82 -0.34 5.70 16 LS Contribution 357.46 15.07 5.39 5.39 Total: -1.00 -28.17 357.46 -10.85 -39.02 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -6.62 Total: 14.05 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: -2.72 Total: -37.17 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: -0.43 Total: -45.65 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -1.82 Total: -47.56 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -4.05 Total: 14.34 kcal Atomic # 16 Polarization: 58.17 SS G_CDS: -0.58 Total: 57.58 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.17 -10.85 -39.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867147697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.923 kcal (2) G-P(sol) polarization free energy of solvation -28.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds