Wall clock time and date at job start Sat Apr 11 2020 05:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.49511 * 2 1 4 4 C 1.53238 * 109.49127 * 239.94528 * 2 1 3 5 5 N 1.47075 * 108.52195 * 186.18089 * 4 2 1 6 6 S 1.65597 * 120.88581 * 231.16344 * 5 4 2 7 7 O 1.42100 * 106.40470 * 203.54115 * 6 5 4 8 8 O 1.42099 * 106.40066 * 336.46563 * 6 5 4 9 9 C 1.76203 * 107.21845 * 90.00008 * 6 5 4 10 10 C 1.38233 * 120.00246 * 269.73170 * 9 6 5 11 11 C 1.38235 * 119.99780 * 179.78713 * 10 9 6 12 12 C 1.38232 * 120.00145 * 0.43773 * 11 10 9 13 13 C 1.50701 * 119.99879 * 179.83406 * 12 11 10 14 14 C 1.50693 * 109.47284 * 269.97907 * 13 12 11 15 15 H 1.08002 * 119.99896 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00045 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00111 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99850 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47574 * 59.99777 * 18 16 14 20 20 H 1.48505 * 109.47199 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47035 * 299.99376 * 18 16 14 22 22 C 1.38234 * 119.99846 * 359.81502 * 12 11 10 23 23 C 1.38227 * 120.00244 * 359.97438 * 22 12 11 24 24 C 1.47077 * 118.23616 * 51.18940 * 5 4 2 25 25 C 1.53245 * 108.52377 * 308.81334 * 24 5 4 26 26 H 1.08994 * 109.49918 * 173.78648 * 25 24 5 27 27 C 1.52995 * 109.48853 * 293.84512 * 25 24 5 28 28 N 1.46899 * 109.33588 * 53.82702 * 25 24 5 29 29 H 1.09001 * 109.47163 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46934 * 299.99927 * 1 2 3 31 31 H 1.09003 * 109.47206 * 59.99855 * 1 2 3 32 32 H 1.08994 * 109.63336 * 305.89665 * 4 2 1 33 33 H 1.09003 * 109.62860 * 66.28080 * 4 2 1 34 34 H 1.07995 * 119.99753 * 359.97438 * 10 9 6 35 35 H 1.08001 * 119.99860 * 180.27599 * 11 10 9 36 36 H 1.09000 * 109.47413 * 29.98362 * 13 12 11 37 37 H 1.09004 * 109.47179 * 149.98078 * 13 12 11 38 38 H 0.96997 * 120.00168 * 180.02562 * 17 16 14 39 39 H 1.08001 * 119.99616 * 180.02562 * 22 12 11 40 40 H 1.08003 * 120.00204 * 180.02562 * 23 22 12 41 41 H 1.09000 * 109.63024 * 68.51973 * 24 5 4 42 42 H 1.08998 * 109.63374 * 188.90888 * 24 5 4 43 43 H 1.08995 * 109.47432 * 59.99851 * 27 25 24 44 44 H 1.09003 * 109.47087 * 179.97438 * 27 25 24 45 45 H 1.08994 * 109.47305 * 299.99176 * 27 25 24 46 46 H 1.00901 * 110.99936 * 172.74688 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2503 5 7 3.5042 -0.8423 -1.1559 6 16 4.4787 -0.3582 -2.4042 7 8 5.6967 -1.0767 -2.2645 8 8 3.6795 -0.4041 -3.5782 9 6 4.8683 1.3389 -2.1338 10 6 4.0582 2.3267 -2.6616 11 6 4.3615 3.6580 -2.4457 12 6 5.4799 4.0014 -1.7095 13 6 5.8125 5.4528 -1.4773 14 6 6.7024 5.9482 -2.5880 15 1 6.9973 5.2790 -3.3828 16 6 7.1402 7.2556 -2.5895 17 7 6.7808 8.0705 -1.6219 18 14 8.2427 7.8698 -3.9667 19 1 7.5386 7.7258 -5.2662 20 1 8.5717 9.2997 -3.7372 21 1 9.4951 7.0722 -3.9912 22 6 6.2930 3.0136 -1.1861 23 6 5.9873 1.6824 -1.3983 24 6 4.0787 -1.4032 0.0763 25 6 3.4872 -0.6530 1.2746 26 1 3.8166 -1.1270 2.1992 27 6 3.9601 0.8018 1.2500 28 7 2.0208 -0.6937 1.1983 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.5961 -1.7168 -1.3065 33 1 1.7742 -0.1518 -2.1391 34 1 3.1866 2.0583 -3.2401 35 1 3.7260 4.4297 -2.8543 36 1 4.8932 6.0381 -1.4599 37 1 6.3289 5.5591 -0.5233 38 1 7.0885 8.9904 -1.6231 39 1 7.1666 3.2820 -0.6106 40 1 6.6223 0.9106 -0.9890 41 1 3.8293 -2.4619 0.1478 42 1 5.1619 -1.2823 0.0635 43 1 3.6297 1.2757 0.3257 44 1 3.5388 1.3352 2.1022 45 1 5.0483 0.8311 1.3045 46 1 1.6044 -0.3108 2.0338 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886883918.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:21 Heat of formation + Delta-G solvation = -51.582596 kcal Electronic energy + Delta-G solvation = -28339.341015 eV Core-core repulsion = 24548.373222 eV Total energy + Delta-G solvation = -3790.967793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.54248 -38.82401 -37.24192 -35.79162 -34.15214 -33.71635 -33.45228 -31.58863 -30.61274 -28.32946 -27.47256 -27.27939 -25.25549 -23.73644 -22.47534 -22.23272 -20.92107 -19.70931 -18.81195 -18.02126 -17.41772 -16.47188 -16.24465 -15.97082 -15.58368 -15.15491 -15.05510 -14.74100 -14.40435 -14.32601 -14.05560 -13.73943 -13.17670 -13.15460 -12.85448 -12.63137 -12.57124 -12.46305 -12.28032 -12.19739 -12.02346 -11.90716 -11.75283 -11.67303 -11.51523 -11.38206 -11.20075 -10.99889 -10.92685 -10.78396 -10.51367 -10.50896 -9.78791 -9.69950 -9.33354 -8.63860 -8.57824 -8.55687 -8.40117 -6.19593 -4.24811 0.43384 1.30327 1.76246 2.93709 3.24300 3.28518 3.32018 3.76404 3.83843 4.05986 4.27920 4.34706 4.43446 4.65984 4.80680 4.87702 4.94232 5.05072 5.12612 5.16785 5.19019 5.19957 5.23870 5.41437 5.48507 5.58258 5.64756 5.68763 5.71735 5.76442 5.76942 5.87916 5.89422 5.94100 6.14128 6.21651 6.29454 6.35885 6.50789 6.74295 6.80644 6.87469 7.09189 7.25736 7.39730 7.55648 7.75222 8.10493 8.79723 9.40311 10.90396 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016865 B = 0.003243 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.888895 B = 8631.379300 C = 9154.784554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.062 3.938 3 H 0.054 0.946 4 C 0.133 3.867 5 N -0.999 5.999 6 S 2.692 3.308 7 O -0.962 6.962 8 O -0.963 6.963 9 C -0.703 4.703 10 C -0.023 4.023 11 C -0.145 4.145 12 C 0.027 3.973 13 C 0.040 3.960 14 C -0.519 4.519 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.899 3.101 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.144 4.144 23 C -0.021 4.021 24 C 0.132 3.868 25 C 0.071 3.929 26 H 0.093 0.907 27 C -0.194 4.194 28 N -0.675 5.675 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.265 0.735 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.967 -17.649 7.083 21.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.049 4.049 3 H 0.072 0.928 4 C 0.007 3.993 5 N -0.836 5.836 6 S 2.786 3.214 7 O -0.953 6.953 8 O -0.953 6.953 9 C -0.792 4.792 10 C -0.043 4.043 11 C -0.164 4.164 12 C 0.026 3.974 13 C 0.004 3.996 14 C -0.557 4.557 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.726 3.274 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.163 4.163 23 C -0.040 4.040 24 C 0.006 3.994 25 C -0.041 4.041 26 H 0.111 0.889 27 C -0.253 4.253 28 N -0.307 5.307 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.684 -18.638 6.139 22.344 hybrid contribution 0.830 2.243 -0.063 2.392 sum -9.854 -16.396 6.076 20.071 Atomic orbital electron populations 1.21795 0.93661 1.02772 1.02223 1.21909 0.95337 0.96548 0.91112 0.92806 1.21540 0.78457 1.01747 0.97569 1.57826 1.16226 1.77127 1.32426 1.01819 0.72784 0.74112 0.72651 1.93547 1.44507 1.71205 1.86011 1.93547 1.69903 1.87293 1.44580 1.30399 1.08139 1.23397 1.17299 1.20739 0.96668 0.92771 0.94106 1.21230 0.98869 0.95498 1.00792 1.21099 0.89920 0.98834 0.87500 1.18522 0.97912 0.84969 0.98244 1.20930 1.30371 0.95995 1.08385 0.92344 1.24996 0.96260 0.96646 0.96161 1.69931 1.44897 1.06033 1.32126 0.86538 0.80955 0.77735 0.82160 1.20017 1.21085 1.20024 1.21219 1.00642 0.91953 1.02517 1.20721 0.93124 0.97141 0.93048 1.21533 0.97803 0.97903 0.82141 1.21920 0.88085 0.95319 0.98758 0.88889 1.22600 1.02541 0.97304 1.02811 1.60500 1.05864 1.59463 1.04887 0.91564 0.92401 0.91657 0.90328 0.89072 0.85472 0.85447 0.94801 0.94792 0.92557 0.85464 0.85513 0.90330 0.88959 0.91316 0.92587 0.91654 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.43 37.16 0.35 -0.63 16 2 C 0.06 0.52 2.81 -67.59 -0.19 0.33 16 3 H 0.05 0.52 6.10 -51.93 -0.32 0.20 16 4 C 0.13 1.27 5.81 -3.61 -0.02 1.25 16 5 N -1.00 -10.96 2.80 -113.24 -0.32 -11.28 16 6 S 2.69 38.51 5.70 -107.50 -0.61 37.90 16 7 O -0.96 -15.70 16.06 -57.17 -0.92 -16.62 16 8 O -0.96 -15.77 16.06 -57.17 -0.92 -16.69 16 9 C -0.70 -10.90 5.34 -39.58 -0.21 -11.11 16 10 C -0.02 -0.37 9.52 -39.58 -0.38 -0.75 16 11 C -0.14 -2.64 9.70 -39.58 -0.38 -3.02 16 12 C 0.03 0.54 5.07 -104.63 -0.53 0.01 16 13 C 0.04 0.98 5.10 -29.04 -0.15 0.83 16 14 C -0.52 -14.00 9.09 -34.44 -0.31 -14.31 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 18 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 C -0.14 -2.62 9.70 -39.59 -0.38 -3.00 16 23 C -0.02 -0.33 9.52 -39.58 -0.38 -0.71 16 24 C 0.13 1.24 5.92 -3.60 -0.02 1.22 16 25 C 0.07 0.58 3.70 -67.59 -0.25 0.33 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 27 C -0.19 -1.86 8.77 37.15 0.33 -1.53 16 28 N -0.68 -5.26 6.30 -99.48 -0.63 -5.89 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.87 7.23 -51.93 -0.38 0.49 16 34 H 0.13 1.76 7.61 -52.49 -0.40 1.36 16 35 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 36 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.13 2.21 8.06 -52.49 -0.42 1.78 16 40 H 0.13 1.74 7.62 -52.48 -0.40 1.34 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.86 7.21 -51.93 -0.37 0.48 16 43 H 0.07 0.77 5.28 -51.93 -0.27 0.50 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.34 2.26 8.77 -39.29 -0.34 1.92 16 LS Contribution 379.31 15.07 5.72 5.72 Total: -1.00 -31.78 379.31 -11.68 -43.46 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.09 Total: 1.54 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: -2.63 Total: -29.51 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: -0.21 Total: -41.84 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -1.84 Total: -33.30 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 38.51 SS G_CDS: -0.61 Total: 37.90 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.78 -11.68 -43.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886883918.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.123 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds