Wall clock time and date at job start Sat Apr 11 2020 05:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.49511 * 2 1 4 4 C 1.53238 * 109.49127 * 239.94528 * 2 1 3 5 5 N 1.47075 * 108.52195 * 186.18089 * 4 2 1 6 6 S 1.65597 * 120.88581 * 231.16344 * 5 4 2 7 7 O 1.42100 * 106.40470 * 203.54115 * 6 5 4 8 8 O 1.42099 * 106.40066 * 336.46563 * 6 5 4 9 9 C 1.76203 * 107.21845 * 90.00008 * 6 5 4 10 10 C 1.38233 * 120.00246 * 269.73170 * 9 6 5 11 11 C 1.38235 * 119.99780 * 179.78713 * 10 9 6 12 12 C 1.38232 * 120.00145 * 0.43773 * 11 10 9 13 13 C 1.50701 * 119.99879 * 179.83406 * 12 11 10 14 14 C 1.50693 * 109.47284 * 269.97907 * 13 12 11 15 15 H 1.08002 * 119.99896 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00045 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00111 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99850 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47574 * 59.99777 * 18 16 14 20 20 H 1.48505 * 109.47199 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47035 * 299.99376 * 18 16 14 22 22 C 1.38234 * 119.99846 * 359.81502 * 12 11 10 23 23 C 1.38227 * 120.00244 * 359.97438 * 22 12 11 24 24 C 1.47077 * 118.23616 * 51.18940 * 5 4 2 25 25 C 1.53245 * 108.52377 * 308.81334 * 24 5 4 26 26 H 1.08994 * 109.49918 * 173.78648 * 25 24 5 27 27 C 1.52995 * 109.48853 * 293.84512 * 25 24 5 28 28 N 1.46899 * 109.33588 * 53.82702 * 25 24 5 29 29 H 1.09001 * 109.47163 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46934 * 299.99927 * 1 2 3 31 31 H 1.09003 * 109.47206 * 59.99855 * 1 2 3 32 32 H 1.08994 * 109.63336 * 305.89665 * 4 2 1 33 33 H 1.09003 * 109.62860 * 66.28080 * 4 2 1 34 34 H 1.07995 * 119.99753 * 359.97438 * 10 9 6 35 35 H 1.08001 * 119.99860 * 180.27599 * 11 10 9 36 36 H 1.09000 * 109.47413 * 29.98362 * 13 12 11 37 37 H 1.09004 * 109.47179 * 149.98078 * 13 12 11 38 38 H 0.96997 * 120.00168 * 180.02562 * 17 16 14 39 39 H 1.08001 * 119.99616 * 180.02562 * 22 12 11 40 40 H 1.08003 * 120.00204 * 180.02562 * 23 22 12 41 41 H 1.09000 * 109.63024 * 68.51973 * 24 5 4 42 42 H 1.08998 * 109.63374 * 188.90888 * 24 5 4 43 43 H 1.08995 * 109.47432 * 59.99851 * 27 25 24 44 44 H 1.09003 * 109.47087 * 179.97438 * 27 25 24 45 45 H 1.08994 * 109.47305 * 299.99176 * 27 25 24 46 46 H 1.00901 * 110.99936 * 172.74688 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2503 5 7 3.5042 -0.8423 -1.1559 6 16 4.4787 -0.3582 -2.4042 7 8 5.6967 -1.0767 -2.2645 8 8 3.6795 -0.4041 -3.5782 9 6 4.8683 1.3389 -2.1338 10 6 4.0582 2.3267 -2.6616 11 6 4.3615 3.6580 -2.4457 12 6 5.4799 4.0014 -1.7095 13 6 5.8125 5.4528 -1.4773 14 6 6.7024 5.9482 -2.5880 15 1 6.9973 5.2790 -3.3828 16 6 7.1402 7.2556 -2.5895 17 7 6.7808 8.0705 -1.6219 18 14 8.2427 7.8698 -3.9667 19 1 7.5386 7.7258 -5.2662 20 1 8.5717 9.2997 -3.7372 21 1 9.4951 7.0722 -3.9912 22 6 6.2930 3.0136 -1.1861 23 6 5.9873 1.6824 -1.3983 24 6 4.0787 -1.4032 0.0763 25 6 3.4872 -0.6530 1.2746 26 1 3.8166 -1.1270 2.1992 27 6 3.9601 0.8018 1.2500 28 7 2.0208 -0.6937 1.1983 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.5961 -1.7168 -1.3065 33 1 1.7742 -0.1518 -2.1391 34 1 3.1866 2.0583 -3.2401 35 1 3.7260 4.4297 -2.8543 36 1 4.8932 6.0381 -1.4599 37 1 6.3289 5.5591 -0.5233 38 1 7.0885 8.9904 -1.6231 39 1 7.1666 3.2820 -0.6106 40 1 6.6223 0.9106 -0.9890 41 1 3.8293 -2.4619 0.1478 42 1 5.1619 -1.2823 0.0635 43 1 3.6297 1.2757 0.3257 44 1 3.5388 1.3352 2.1022 45 1 5.0483 0.8311 1.3045 46 1 1.6044 -0.3108 2.0338 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886883918.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:20 Heat of formation + Delta-G solvation = -72.663219 kcal Electronic energy + Delta-G solvation = -28340.255140 eV Core-core repulsion = 24548.373222 eV Total energy + Delta-G solvation = -3791.881917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.36107 -40.13972 -38.46704 -37.02685 -35.61957 -34.93486 -34.13807 -33.34030 -31.98648 -29.28097 -28.96476 -28.00024 -26.07186 -25.57703 -23.76682 -22.98223 -22.48191 -20.64445 -19.69563 -19.11705 -18.64906 -18.50159 -17.26611 -16.87250 -16.72043 -16.33327 -16.17528 -16.01620 -15.60949 -15.48183 -15.19566 -14.69879 -14.60858 -14.48372 -14.04125 -13.78140 -13.53224 -13.43857 -13.43659 -13.37594 -13.25939 -13.22489 -13.08225 -12.69798 -12.67496 -12.59475 -12.55325 -12.19902 -12.06918 -12.02327 -11.86556 -11.70495 -11.56819 -11.37244 -10.66823 -10.20332 -9.97962 -9.92476 -9.26500 -8.28824 -6.41748 -0.71490 -0.08113 0.37970 1.37306 1.38682 1.47192 1.88140 2.33300 2.55411 2.76147 3.03877 3.17224 3.21839 3.64483 3.81965 3.93764 3.96581 4.12647 4.13450 4.16823 4.22168 4.38090 4.45058 4.45259 4.51089 4.54468 4.75670 4.79085 4.86589 4.87689 4.90609 4.98663 5.04126 5.08192 5.12010 5.18122 5.22174 5.23652 5.31257 5.32127 5.44289 5.56962 5.65001 5.84284 5.90124 6.07902 6.09368 6.53144 6.69810 7.27479 8.81029 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016865 B = 0.003243 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.888895 B = 8631.379300 C = 9154.784554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.064 3.936 3 H 0.040 0.960 4 C 0.124 3.876 5 N -0.990 5.990 6 S 2.712 3.288 7 O -0.980 6.980 8 O -0.981 6.981 9 C -0.698 4.698 10 C -0.018 4.018 11 C -0.153 4.153 12 C -0.001 4.001 13 C 0.050 3.950 14 C -0.536 4.536 15 H 0.053 0.947 16 C 0.011 3.989 17 N -0.925 5.925 18 Si 0.963 3.037 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.269 1.269 22 C -0.151 4.151 23 C -0.014 4.014 24 C 0.123 3.877 25 C 0.077 3.923 26 H 0.115 0.885 27 C -0.194 4.194 28 N -0.672 5.672 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.151 0.849 35 H 0.128 0.872 36 H 0.012 0.988 37 H 0.012 0.988 38 H 0.268 0.732 39 H 0.128 0.872 40 H 0.152 0.848 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.520 -19.759 7.054 23.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.047 4.047 3 H 0.058 0.942 4 C -0.001 4.001 5 N -0.829 5.829 6 S 2.804 3.196 7 O -0.970 6.970 8 O -0.972 6.972 9 C -0.785 4.785 10 C -0.038 4.038 11 C -0.172 4.172 12 C -0.002 4.002 13 C 0.013 3.987 14 C -0.573 4.573 15 H 0.072 0.928 16 C -0.188 4.188 17 N -0.564 5.564 18 Si 0.787 3.213 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.194 1.194 22 C -0.170 4.170 23 C -0.033 4.033 24 C -0.002 4.002 25 C -0.035 4.035 26 H 0.132 0.868 27 C -0.253 4.253 28 N -0.304 5.304 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.169 0.831 35 H 0.146 0.854 36 H 0.030 0.970 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.146 0.854 40 H 0.169 0.831 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.238 -20.734 6.116 24.363 hybrid contribution 0.918 2.773 0.014 2.921 sum -10.319 -17.961 6.130 21.602 Atomic orbital electron populations 1.21766 0.92279 1.03251 1.02727 1.21870 0.96387 0.95568 0.90911 0.94245 1.21779 0.77328 1.02701 0.98258 1.57599 1.16578 1.76400 1.32349 1.01230 0.72433 0.73169 0.72779 1.93523 1.45854 1.71141 1.86476 1.93520 1.70191 1.87234 1.46227 1.30811 1.07427 1.24555 1.15708 1.20954 0.97329 0.91743 0.93729 1.21261 0.98390 0.96748 1.00785 1.20783 0.92071 0.96940 0.90379 1.18241 0.96171 0.87724 0.96578 1.21262 1.30807 0.96334 1.08943 0.92838 1.25846 0.97608 0.96851 0.98485 1.70041 1.46103 1.06393 1.33874 0.85533 0.79141 0.77393 0.79227 1.19385 1.20339 1.19382 1.21246 1.00492 0.92619 1.02650 1.20928 0.93346 0.96571 0.92467 1.21804 0.98049 0.98800 0.81567 1.21914 0.88267 0.94176 0.99122 0.86751 1.22609 1.02337 0.98400 1.01968 1.60511 1.05595 1.59230 1.05093 0.91035 0.91780 0.91369 0.89034 0.89122 0.83093 0.85428 0.96971 0.96922 0.92352 0.85407 0.83078 0.88834 0.88839 0.93162 0.92299 0.91996 0.82878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.43 71.98 0.68 -0.91 16 2 C 0.06 0.94 2.81 45.00 0.13 1.07 16 3 H 0.04 0.71 6.10 -2.39 -0.01 0.70 16 4 C 0.12 2.10 5.81 86.35 0.50 2.60 16 5 N -0.99 -19.57 2.80 -512.18 -1.43 -21.00 16 6 S 2.71 72.62 5.70 -56.49 -0.32 72.30 16 7 O -0.98 -30.02 16.06 -128.00 -2.06 -32.08 16 8 O -0.98 -30.35 16.06 -128.00 -2.06 -32.41 16 9 C -0.70 -20.77 5.34 22.27 0.12 -20.66 16 10 C -0.02 -0.57 9.52 22.27 0.21 -0.36 16 11 C -0.15 -5.66 9.70 22.27 0.22 -5.44 16 12 C 0.00 -0.06 5.07 -19.87 -0.10 -0.16 16 13 C 0.05 2.54 5.10 29.10 0.15 2.69 16 14 C -0.54 -29.78 9.09 25.60 0.23 -29.55 16 15 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 16 C 0.01 0.63 5.46 84.66 0.46 1.09 16 17 N -0.92 -54.05 13.29 21.45 0.28 -53.77 16 18 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 C -0.15 -5.55 9.70 22.27 0.22 -5.33 16 23 C -0.01 -0.43 9.52 22.27 0.21 -0.22 16 24 C 0.12 1.98 5.92 86.35 0.51 2.49 16 25 C 0.08 1.05 3.70 45.00 0.17 1.22 16 26 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 27 C -0.19 -3.45 8.77 71.98 0.63 -2.82 16 28 N -0.67 -8.71 6.30 -468.65 -2.95 -11.67 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 1.55 7.23 -2.39 -0.02 1.53 16 34 H 0.15 3.94 7.61 -2.91 -0.02 3.91 16 35 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 36 H 0.01 0.65 8.09 -2.39 -0.02 0.63 16 37 H 0.01 0.67 8.09 -2.38 -0.02 0.66 16 38 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 39 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 40 H 0.15 3.88 7.62 -2.91 -0.02 3.86 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.09 1.51 7.21 -2.39 -0.02 1.49 16 43 H 0.05 1.08 5.28 -2.39 -0.01 1.07 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.35 3.72 8.77 -89.69 -0.79 2.93 16 Total: -1.00 -68.47 379.31 -1.98 -70.45 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.19 Total: 16.92 kcal Atomic # 6 Polarization: -58.62 SS G_CDS: 4.33 Total: -54.28 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -4.10 Total: -86.43 kcal Atomic # 8 Polarization: -60.38 SS G_CDS: -4.11 Total: -64.49 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 72.62 SS G_CDS: -0.32 Total: 72.30 kcal Total: -68.47 -1.98 -70.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886883918.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.214 kcal (2) G-P(sol) polarization free energy of solvation -68.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds