Wall clock time and date at job start Sat Apr 11 2020 05:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.49135 * 2 1 4 4 C 1.53243 * 109.49233 * 120.05271 * 2 1 3 5 5 N 1.47082 * 108.52202 * 173.79037 * 4 2 1 6 6 S 1.65600 * 120.88354 * 128.81629 * 5 4 2 7 7 O 1.42103 * 106.40018 * 336.45837 * 6 5 4 8 8 O 1.42102 * 106.40415 * 203.54314 * 6 5 4 9 9 C 1.76198 * 107.21800 * 89.99787 * 6 5 4 10 10 C 1.38231 * 119.99599 * 90.00418 * 9 6 5 11 11 C 1.38242 * 119.99907 * 179.97438 * 10 9 6 12 12 C 1.38231 * 119.99947 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00160 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47166 * 90.00049 * 13 12 11 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.38237 * 120.00067 * 0.25651 * 12 11 10 23 23 C 1.38230 * 120.00217 * 270.02495 * 9 6 5 24 24 C 1.47080 * 118.23445 * 309.08744 * 5 4 2 25 25 C 1.52780 * 108.76514 * 50.85285 * 24 5 4 26 26 H 1.09008 * 109.58776 * 186.35316 * 25 24 5 27 27 C 1.53001 * 109.34190 * 66.34071 * 25 24 5 28 28 N 1.46896 * 109.49477 * 239.91637 * 2 1 3 29 29 H 1.09000 * 109.47032 * 299.94841 * 1 2 3 30 30 H 1.08992 * 109.46739 * 59.95080 * 1 2 3 31 31 H 1.09009 * 109.46592 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.62675 * 54.08100 * 4 2 1 33 33 H 1.08998 * 109.62942 * 293.50205 * 4 2 1 34 34 H 1.08002 * 120.00347 * 359.97438 * 10 9 6 35 35 H 1.08002 * 119.99575 * 179.97438 * 11 10 9 36 36 H 1.09007 * 109.46871 * 329.99783 * 13 12 11 37 37 H 1.09003 * 109.46889 * 210.00537 * 13 12 11 38 38 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 39 39 H 1.07997 * 120.00430 * 179.72613 * 22 12 11 40 40 H 1.08004 * 120.00288 * 359.97438 * 23 9 6 41 41 H 1.09005 * 109.62367 * 170.61929 * 24 5 4 42 42 H 1.08996 * 109.62781 * 291.19825 * 24 5 4 43 43 H 1.09008 * 109.46823 * 300.12571 * 27 25 24 44 44 H 1.09001 * 109.47230 * 60.12110 * 27 25 24 45 45 H 1.08995 * 109.47330 * 180.13017 * 27 25 24 46 46 H 1.00903 * 111.00055 * 52.78822 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0414 -0.7235 1.2504 5 7 3.5043 -0.8429 1.1557 6 16 4.4793 -0.3584 2.4034 7 8 3.7341 0.5955 3.1478 8 8 5.7507 -0.0784 1.8338 9 6 4.7032 -1.7498 3.4609 10 6 5.7570 -2.6184 3.2464 11 6 5.9331 -3.7098 4.0764 12 6 5.0551 -3.9329 5.1205 13 6 5.2467 -5.1229 6.0249 14 6 6.1302 -4.7367 7.1830 15 1 6.5143 -3.7300 7.2570 16 6 6.4483 -5.6685 8.1482 17 7 5.9802 -6.8943 8.0584 18 14 7.5441 -5.1899 9.5833 19 1 8.9638 -5.4405 9.2272 20 1 7.3575 -3.7489 9.8896 21 1 7.1821 -6.0000 10.7741 22 6 3.9979 -3.0675 5.3315 23 6 3.8250 -1.9731 4.5048 24 6 4.0785 -1.3985 -0.0792 25 6 3.4867 -0.6540 -1.2748 26 1 3.8157 -1.1278 -2.1997 27 6 3.9595 0.8009 -1.2504 28 7 2.0202 -0.6941 -1.1982 29 1 -0.3633 0.5130 0.8905 30 1 -0.3632 0.5146 -0.8895 31 1 -0.3633 -1.0278 -0.0005 32 1 1.5958 -1.7166 1.3067 33 1 1.7776 -0.1498 2.1389 34 1 6.4427 -2.4443 2.4304 35 1 6.7562 -4.3886 3.9085 36 1 5.7145 -5.9330 5.4653 37 1 4.2783 -5.4531 6.4010 38 1 6.2043 -7.5499 8.7373 39 1 3.3093 -3.2442 6.1445 40 1 3.0017 -1.2945 4.6724 41 1 5.1610 -1.2709 -0.0693 42 1 3.8325 -2.4578 -0.1530 43 1 3.6311 1.2742 -0.3249 44 1 5.0477 0.8304 -1.3072 45 1 3.5366 1.3348 -2.1013 46 1 1.6039 -0.3111 -2.0337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886883919.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:23 Heat of formation + Delta-G solvation = -51.695849 kcal Electronic energy + Delta-G solvation = -27673.356479 eV Core-core repulsion = 23882.383775 eV Total energy + Delta-G solvation = -3790.972704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.58327 -38.79401 -37.24872 -35.79433 -34.19216 -33.67705 -33.52644 -31.55489 -30.57474 -28.43578 -27.43264 -27.34321 -25.29102 -23.71136 -22.48547 -22.25916 -20.86076 -19.81927 -18.84998 -18.02213 -17.34425 -16.44928 -16.25497 -16.01036 -15.64474 -15.18304 -15.04040 -14.83022 -14.37291 -14.32479 -14.07134 -13.73994 -13.20536 -13.10027 -12.85664 -12.73721 -12.63363 -12.47643 -12.34201 -12.22256 -12.02507 -11.99965 -11.70744 -11.67326 -11.48771 -11.42717 -11.21881 -10.98794 -10.91639 -10.81287 -10.51914 -10.48337 -9.75906 -9.66813 -9.34545 -8.65496 -8.58884 -8.53893 -8.36944 -6.17314 -4.22300 0.43246 1.33423 1.79780 2.94128 3.24189 3.30706 3.35153 3.73173 3.80328 4.08821 4.26962 4.36063 4.40533 4.62008 4.73083 4.84986 4.89831 4.99551 5.10113 5.15552 5.19677 5.22234 5.23137 5.34465 5.43647 5.51167 5.57939 5.66495 5.68937 5.72427 5.78069 5.83469 5.90447 5.91634 5.98858 6.25268 6.32749 6.36172 6.53383 6.68367 6.83892 6.90820 7.03493 7.29376 7.43398 7.59102 7.77837 8.13224 8.82484 9.42637 10.92743 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023477 B = 0.002652 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.355144 B =10555.095251 C =10774.316527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.050 0.950 4 C 0.127 3.873 5 N -0.999 5.999 6 S 2.693 3.307 7 O -0.964 6.964 8 O -0.962 6.962 9 C -0.704 4.704 10 C -0.023 4.023 11 C -0.145 4.145 12 C 0.027 3.973 13 C 0.039 3.961 14 C -0.518 4.518 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.899 3.101 19 H -0.278 1.278 20 H -0.272 1.272 21 H -0.284 1.284 22 C -0.145 4.145 23 C -0.024 4.024 24 C 0.126 3.874 25 C 0.074 3.926 26 H 0.096 0.904 27 C -0.191 4.191 28 N -0.676 5.676 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.350 12.288 -20.036 25.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.043 4.043 3 H 0.068 0.932 4 C 0.001 3.999 5 N -0.837 5.837 6 S 2.788 3.212 7 O -0.954 6.954 8 O -0.953 6.953 9 C -0.793 4.793 10 C -0.043 4.043 11 C -0.164 4.164 12 C 0.026 3.974 13 C 0.003 3.997 14 C -0.556 4.556 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.726 3.274 19 H -0.204 1.204 20 H -0.197 1.197 21 H -0.210 1.210 22 C -0.164 4.164 23 C -0.043 4.043 24 C 0.000 4.000 25 C -0.037 4.037 26 H 0.114 0.886 27 C -0.250 4.250 28 N -0.308 5.308 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.115 0.885 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.013 12.329 -19.527 24.790 hybrid contribution 0.719 0.331 0.880 1.183 sum -8.294 12.660 -18.647 24.016 Atomic orbital electron populations 1.21800 0.93547 1.03001 1.02127 1.21837 0.95362 0.96160 0.90973 0.93213 1.21611 0.78551 1.01648 0.98080 1.57778 1.16507 1.80149 1.29250 1.01724 0.72777 0.74135 0.72567 1.93538 1.72387 1.58173 1.71335 1.93538 1.40253 1.83768 1.77709 1.30371 1.08196 1.23637 1.17102 1.20754 0.93738 0.92176 0.97612 1.21244 1.00529 0.98402 0.96225 1.21113 0.89584 0.95517 0.91174 1.18537 0.98490 0.89722 0.92979 1.20973 1.30434 0.97446 1.06722 0.92297 1.25006 0.96089 0.94857 0.98189 1.69949 1.44558 1.03220 1.35247 0.86479 0.80674 0.78684 0.81572 1.20441 1.19692 1.21014 1.21245 0.99688 0.95267 1.00198 1.20753 0.95870 0.95698 0.91984 1.21496 0.98239 0.98056 0.82172 1.21787 0.88008 0.95059 0.98861 0.88648 1.22547 1.02778 0.97753 1.01908 1.60482 1.05854 1.59560 1.04855 0.91609 0.92456 0.91371 0.90426 0.88665 0.85370 0.85328 0.94705 0.94702 0.92623 0.85331 0.85397 0.88508 0.90449 0.92325 0.91311 0.92620 0.83896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.43 37.16 0.35 -0.57 16 2 C 0.07 0.55 2.81 -67.59 -0.19 0.36 16 3 H 0.05 0.43 6.10 -51.93 -0.32 0.12 16 4 C 0.13 1.23 5.95 -3.60 -0.02 1.21 16 5 N -1.00 -11.07 2.81 -113.49 -0.32 -11.39 16 6 S 2.69 38.74 5.74 -107.50 -0.62 38.13 16 7 O -0.96 -15.72 15.89 -57.17 -0.91 -16.62 16 8 O -0.96 -15.48 15.89 -57.17 -0.91 -16.39 16 9 C -0.70 -11.39 5.97 -39.59 -0.24 -11.62 16 10 C -0.02 -0.39 9.52 -39.58 -0.38 -0.76 16 11 C -0.15 -2.73 9.70 -39.58 -0.38 -3.11 16 12 C 0.03 0.55 5.07 -104.63 -0.53 0.02 16 13 C 0.04 0.97 5.10 -29.04 -0.15 0.82 16 14 C -0.52 -14.12 9.09 -34.44 -0.31 -14.43 16 15 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 18 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.15 -2.73 9.70 -39.58 -0.38 -3.11 16 23 C -0.02 -0.39 9.52 -39.58 -0.38 -0.77 16 24 C 0.13 1.19 6.01 -3.84 -0.02 1.17 16 25 C 0.07 0.57 3.69 -67.83 -0.25 0.32 16 26 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 27 C -0.19 -1.57 8.76 37.16 0.33 -1.24 16 28 N -0.68 -4.99 6.30 -99.72 -0.63 -5.62 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 0.93 6.93 -51.93 -0.36 0.57 16 34 H 0.13 1.81 7.62 -52.49 -0.40 1.41 16 35 H 0.13 2.28 8.06 -52.49 -0.42 1.86 16 36 H 0.03 0.89 8.09 -51.92 -0.42 0.47 16 37 H 0.03 0.89 8.08 -51.93 -0.42 0.47 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.13 2.29 8.06 -52.49 -0.42 1.86 16 40 H 0.13 1.82 7.62 -52.48 -0.40 1.42 16 41 H 0.10 0.91 6.92 -51.93 -0.36 0.55 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.57 5.93 -51.92 -0.31 0.27 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.34 1.97 8.77 -39.29 -0.34 1.63 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -32.23 379.94 -11.69 -43.92 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.10 Total: 1.08 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: -2.66 Total: -30.14 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -0.21 Total: -41.87 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -1.82 Total: -33.01 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 38.74 SS G_CDS: -0.62 Total: 38.13 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.23 -11.69 -43.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886883919.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.771 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds