Wall clock time and date at job start Sat Apr 11 2020 05:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.49135 * 2 1 4 4 C 1.53243 * 109.49233 * 120.05271 * 2 1 3 5 5 N 1.47082 * 108.52202 * 173.79037 * 4 2 1 6 6 S 1.65600 * 120.88354 * 128.81629 * 5 4 2 7 7 O 1.42103 * 106.40018 * 336.45837 * 6 5 4 8 8 O 1.42102 * 106.40415 * 203.54314 * 6 5 4 9 9 C 1.76198 * 107.21800 * 89.99787 * 6 5 4 10 10 C 1.38231 * 119.99599 * 90.00418 * 9 6 5 11 11 C 1.38242 * 119.99907 * 179.97438 * 10 9 6 12 12 C 1.38231 * 119.99947 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00160 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47166 * 90.00049 * 13 12 11 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.38237 * 120.00067 * 0.25651 * 12 11 10 23 23 C 1.38230 * 120.00217 * 270.02495 * 9 6 5 24 24 C 1.47080 * 118.23445 * 309.08744 * 5 4 2 25 25 C 1.52780 * 108.76514 * 50.85285 * 24 5 4 26 26 H 1.09008 * 109.58776 * 186.35316 * 25 24 5 27 27 C 1.53001 * 109.34190 * 66.34071 * 25 24 5 28 28 N 1.46896 * 109.49477 * 239.91637 * 2 1 3 29 29 H 1.09000 * 109.47032 * 299.94841 * 1 2 3 30 30 H 1.08992 * 109.46739 * 59.95080 * 1 2 3 31 31 H 1.09009 * 109.46592 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.62675 * 54.08100 * 4 2 1 33 33 H 1.08998 * 109.62942 * 293.50205 * 4 2 1 34 34 H 1.08002 * 120.00347 * 359.97438 * 10 9 6 35 35 H 1.08002 * 119.99575 * 179.97438 * 11 10 9 36 36 H 1.09007 * 109.46871 * 329.99783 * 13 12 11 37 37 H 1.09003 * 109.46889 * 210.00537 * 13 12 11 38 38 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 39 39 H 1.07997 * 120.00430 * 179.72613 * 22 12 11 40 40 H 1.08004 * 120.00288 * 359.97438 * 23 9 6 41 41 H 1.09005 * 109.62367 * 170.61929 * 24 5 4 42 42 H 1.08996 * 109.62781 * 291.19825 * 24 5 4 43 43 H 1.09008 * 109.46823 * 300.12571 * 27 25 24 44 44 H 1.09001 * 109.47230 * 60.12110 * 27 25 24 45 45 H 1.08995 * 109.47330 * 180.13017 * 27 25 24 46 46 H 1.00903 * 111.00055 * 52.78822 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0414 -0.7235 1.2504 5 7 3.5043 -0.8429 1.1557 6 16 4.4793 -0.3584 2.4034 7 8 3.7341 0.5955 3.1478 8 8 5.7507 -0.0784 1.8338 9 6 4.7032 -1.7498 3.4609 10 6 5.7570 -2.6184 3.2464 11 6 5.9331 -3.7098 4.0764 12 6 5.0551 -3.9329 5.1205 13 6 5.2467 -5.1229 6.0249 14 6 6.1302 -4.7367 7.1830 15 1 6.5143 -3.7300 7.2570 16 6 6.4483 -5.6685 8.1482 17 7 5.9802 -6.8943 8.0584 18 14 7.5441 -5.1899 9.5833 19 1 8.9638 -5.4405 9.2272 20 1 7.3575 -3.7489 9.8896 21 1 7.1821 -6.0000 10.7741 22 6 3.9979 -3.0675 5.3315 23 6 3.8250 -1.9731 4.5048 24 6 4.0785 -1.3985 -0.0792 25 6 3.4867 -0.6540 -1.2748 26 1 3.8157 -1.1278 -2.1997 27 6 3.9595 0.8009 -1.2504 28 7 2.0202 -0.6941 -1.1982 29 1 -0.3633 0.5130 0.8905 30 1 -0.3632 0.5146 -0.8895 31 1 -0.3633 -1.0278 -0.0005 32 1 1.5958 -1.7166 1.3067 33 1 1.7776 -0.1498 2.1389 34 1 6.4427 -2.4443 2.4304 35 1 6.7562 -4.3886 3.9085 36 1 5.7145 -5.9330 5.4653 37 1 4.2783 -5.4531 6.4010 38 1 6.2043 -7.5499 8.7373 39 1 3.3093 -3.2442 6.1445 40 1 3.0017 -1.2945 4.6724 41 1 5.1610 -1.2709 -0.0693 42 1 3.8325 -2.4578 -0.1530 43 1 3.6311 1.2742 -0.3249 44 1 5.0477 0.8304 -1.3072 45 1 3.5366 1.3348 -2.1013 46 1 1.6039 -0.3111 -2.0337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886883919.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:22 Heat of formation + Delta-G solvation = -73.174109 kcal Electronic energy + Delta-G solvation = -27674.287846 eV Core-core repulsion = 23882.383775 eV Total energy + Delta-G solvation = -3791.904071 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.26227 -40.24970 -38.47471 -37.03024 -35.61218 -34.95917 -34.15708 -33.33402 -31.98681 -29.26888 -29.00518 -28.01829 -26.08209 -25.57994 -23.76815 -23.02019 -22.45544 -20.68013 -19.82692 -19.03714 -18.63719 -18.47055 -17.27616 -16.87804 -16.72382 -16.33672 -16.19137 -16.02264 -15.66015 -15.47908 -15.21691 -14.69413 -14.61916 -14.48342 -13.97619 -13.83845 -13.53822 -13.47488 -13.42599 -13.40239 -13.30753 -13.24013 -13.07826 -12.69532 -12.67319 -12.60169 -12.51184 -12.17048 -12.06652 -12.03718 -11.86923 -11.69689 -11.53797 -11.43649 -10.66433 -10.20441 -9.98866 -9.94356 -9.27033 -8.28209 -6.41088 -0.72632 -0.08750 0.37257 1.37710 1.37879 1.49521 1.87970 2.33887 2.54015 2.74813 3.04385 3.16799 3.21111 3.64553 3.81823 3.94138 3.96092 4.11037 4.13901 4.17468 4.22165 4.35662 4.44216 4.45296 4.49009 4.54132 4.75228 4.79094 4.85487 4.87808 4.88704 4.96879 5.03125 5.07514 5.09587 5.16402 5.22553 5.24601 5.28001 5.31012 5.42755 5.56363 5.65894 5.84083 5.90270 6.08369 6.08518 6.55586 6.70600 7.28027 8.81941 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023477 B = 0.002652 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.355144 B =10555.095251 C =10774.316527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 H 0.044 0.956 4 C 0.117 3.883 5 N -0.991 5.991 6 S 2.713 3.287 7 O -0.981 6.981 8 O -0.977 6.977 9 C -0.702 4.702 10 C -0.020 4.020 11 C -0.154 4.154 12 C -0.003 4.003 13 C 0.049 3.951 14 C -0.535 4.535 15 H 0.053 0.947 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.964 3.036 19 H -0.271 1.271 20 H -0.268 1.268 21 H -0.277 1.277 22 C -0.154 4.154 23 C -0.021 4.021 24 C 0.116 3.884 25 C 0.078 3.922 26 H 0.118 0.882 27 C -0.191 4.191 28 N -0.675 5.675 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.155 0.845 35 H 0.131 0.869 36 H 0.014 0.986 37 H 0.014 0.986 38 H 0.268 0.732 39 H 0.131 0.869 40 H 0.154 0.846 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.040 0.960 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.731 13.846 -21.661 27.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.042 4.042 3 H 0.062 0.938 4 C -0.008 4.008 5 N -0.830 5.830 6 S 2.806 3.194 7 O -0.972 6.972 8 O -0.967 6.967 9 C -0.789 4.789 10 C -0.039 4.039 11 C -0.173 4.173 12 C -0.004 4.004 13 C 0.012 3.988 14 C -0.573 4.573 15 H 0.071 0.929 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.788 3.212 19 H -0.196 1.196 20 H -0.193 1.193 21 H -0.202 1.202 22 C -0.173 4.173 23 C -0.040 4.040 24 C -0.009 4.009 25 C -0.034 4.034 26 H 0.135 0.865 27 C -0.250 4.250 28 N -0.308 5.308 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.173 0.827 35 H 0.149 0.851 36 H 0.032 0.968 37 H 0.032 0.968 38 H 0.077 0.923 39 H 0.149 0.851 40 H 0.171 0.829 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.392 13.875 -21.145 26.978 hybrid contribution 0.768 -0.096 1.240 1.462 sum -8.624 13.779 -19.905 25.699 Atomic orbital electron populations 1.21771 0.92118 1.03182 1.02939 1.21808 0.96416 0.95492 0.90451 0.93846 1.21852 0.77442 1.02333 0.99141 1.57557 1.16911 1.80003 1.28536 1.01135 0.72509 0.73329 0.72420 1.93512 1.72684 1.58649 1.72325 1.93515 1.41587 1.83824 1.77815 1.30873 1.07341 1.23686 1.17034 1.21018 0.94121 0.91142 0.97606 1.21315 1.00349 0.99442 0.96181 1.20829 0.91920 0.95361 0.92249 1.18261 0.96646 0.90926 0.92977 1.21288 1.30858 0.97246 1.07870 0.92857 1.25866 0.97413 0.94753 1.00873 1.70055 1.45812 1.04224 1.36340 0.85458 0.78927 0.78467 0.78304 1.19618 1.19267 1.20237 1.21312 0.99300 0.95794 1.00909 1.21010 0.96567 0.95119 0.91311 1.21769 0.98460 0.98785 0.81921 1.21808 0.88179 0.94600 0.98809 0.86454 1.22551 1.02549 0.98201 1.01657 1.60466 1.05654 1.59531 1.05185 0.91344 0.91175 0.91459 0.89791 0.88885 0.82695 0.85087 0.96785 0.96806 0.92335 0.85135 0.82855 0.88527 0.89652 0.94119 0.91785 0.91039 0.82511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.43 71.98 0.68 -0.75 16 2 C 0.07 0.96 2.81 45.00 0.13 1.09 16 3 H 0.04 0.67 6.10 -2.39 -0.01 0.66 16 4 C 0.12 2.05 5.95 86.35 0.51 2.57 16 5 N -0.99 -20.08 2.81 -512.98 -1.44 -21.52 16 6 S 2.71 73.70 5.74 -56.49 -0.32 73.38 16 7 O -0.98 -30.51 15.89 -128.00 -2.03 -32.54 16 8 O -0.98 -29.79 15.89 -128.00 -2.03 -31.83 16 9 C -0.70 -21.81 5.97 22.27 0.13 -21.67 16 10 C -0.02 -0.64 9.52 22.27 0.21 -0.42 16 11 C -0.15 -5.84 9.70 22.27 0.22 -5.63 16 12 C 0.00 -0.14 5.07 -19.87 -0.10 -0.24 16 13 C 0.05 2.52 5.10 29.10 0.15 2.67 16 14 C -0.53 -30.02 9.09 25.60 0.23 -29.79 16 15 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 16 C 0.01 0.56 5.46 84.66 0.46 1.02 16 17 N -0.93 -54.40 13.29 21.45 0.28 -54.12 16 18 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 22 C -0.15 -5.88 9.70 22.27 0.22 -5.66 16 23 C -0.02 -0.68 9.52 22.27 0.21 -0.47 16 24 C 0.12 1.92 6.01 86.20 0.52 2.44 16 25 C 0.08 0.99 3.69 44.84 0.17 1.15 16 26 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 27 C -0.19 -2.71 8.76 71.98 0.63 -2.08 16 28 N -0.68 -8.07 6.30 -469.42 -2.96 -11.03 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.67 6.93 -2.39 -0.02 1.65 16 34 H 0.16 4.08 7.62 -2.91 -0.02 4.06 16 35 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 36 H 0.01 0.76 8.09 -2.38 -0.02 0.74 16 37 H 0.01 0.75 8.08 -2.39 -0.02 0.73 16 38 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 39 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 40 H 0.15 4.11 7.62 -2.91 -0.02 4.09 16 41 H 0.10 1.62 6.92 -2.38 -0.02 1.60 16 42 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.04 0.73 5.93 -2.38 -0.01 0.71 16 44 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.35 2.94 8.77 -89.69 -0.79 2.16 16 Total: -1.00 -69.56 379.94 -1.92 -71.48 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.19 Total: 16.13 kcal Atomic # 6 Polarization: -60.14 SS G_CDS: 4.37 Total: -55.78 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -4.11 Total: -86.67 kcal Atomic # 8 Polarization: -60.30 SS G_CDS: -4.07 Total: -64.37 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 73.70 SS G_CDS: -0.32 Total: 73.38 kcal Total: -69.56 -1.92 -71.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886883919.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.691 kcal (2) G-P(sol) polarization free energy of solvation -69.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds