Wall clock time and date at job start Sat Apr 11 2020 05:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46281 * 2 1 4 4 C 1.53044 * 109.46070 * 119.97262 * 2 1 3 5 5 C 1.53123 * 109.27811 * 179.18850 * 4 2 1 6 6 H 1.08998 * 109.52164 * 182.37825 * 5 4 2 7 7 N 1.46498 * 109.52373 * 62.25040 * 5 4 2 8 8 S 1.65591 * 120.00160 * 144.99928 * 7 5 4 9 9 O 1.42101 * 106.40397 * 311.46340 * 8 7 5 10 10 O 1.42101 * 106.40594 * 178.54262 * 8 7 5 11 11 C 1.76202 * 107.21658 * 65.00045 * 8 7 5 12 12 C 1.38234 * 119.99766 * 90.00556 * 11 8 7 13 13 C 1.38238 * 119.99969 * 179.97438 * 12 11 8 14 14 C 1.38234 * 119.99631 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99722 * 179.97438 * 14 13 12 16 16 C 1.50708 * 109.46925 * 90.00252 * 15 14 13 17 17 H 1.07991 * 119.99789 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00008 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00089 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99938 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 269.99556 * 20 18 16 22 22 H 1.48503 * 109.47261 * 149.99737 * 20 18 16 23 23 H 1.48500 * 109.47454 * 29.99730 * 20 18 16 24 24 C 1.38233 * 120.00279 * 0.25633 * 14 13 12 25 25 C 1.38230 * 119.99970 * 359.48985 * 24 14 13 26 26 C 1.53119 * 109.15872 * 302.34599 * 5 4 2 27 27 C 1.53041 * 109.27742 * 57.65472 * 26 5 4 28 28 N 1.46842 * 109.45595 * 240.02188 * 2 1 3 29 29 H 1.08998 * 109.47562 * 300.02828 * 1 2 3 30 30 H 1.09004 * 109.46520 * 60.02808 * 1 2 3 31 31 H 1.09000 * 109.46576 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.50276 * 59.24955 * 4 2 1 33 33 H 1.09002 * 109.50037 * 299.13047 * 4 2 1 34 34 H 0.97008 * 120.00281 * 325.00454 * 7 5 4 35 35 H 1.07996 * 120.00637 * 359.97438 * 12 11 8 36 36 H 1.07994 * 120.00210 * 179.97438 * 13 12 11 37 37 H 1.08994 * 109.47874 * 330.00433 * 15 14 13 38 38 H 1.09000 * 109.47408 * 210.00258 * 15 14 13 39 39 H 0.96997 * 119.99848 * 180.02562 * 19 18 16 40 40 H 1.08007 * 119.99940 * 179.72370 * 24 14 13 41 41 H 1.07994 * 120.00303 * 180.25151 * 25 24 14 42 42 H 1.09003 * 109.50329 * 177.59072 * 26 5 4 43 43 H 1.08998 * 109.50395 * 297.71772 * 26 5 4 44 44 H 1.09007 * 109.45937 * 180.80053 * 27 26 5 45 45 H 1.08998 * 109.45277 * 60.83192 * 27 26 5 46 46 H 1.00891 * 111.00064 * 302.34413 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 3.5710 -0.7362 1.2356 6 1 3.9379 -1.2855 2.1026 7 7 4.0748 0.6388 1.2780 8 16 5.4700 0.9844 2.1002 9 8 5.3462 0.3714 3.3762 10 8 5.7047 2.3750 1.9256 11 6 6.7832 0.1503 1.2729 12 6 7.4701 0.7828 0.2536 13 6 8.5007 0.1287 -0.3952 14 6 8.8439 -1.1582 -0.0249 15 6 9.9671 -1.8715 -0.7325 16 6 11.2666 -1.5906 -0.0229 17 1 11.2779 -0.9590 0.8530 18 6 12.4409 -2.1406 -0.4915 19 7 13.5749 -1.8959 0.1281 20 14 12.4212 -3.2336 -2.0062 21 1 12.2145 -4.6456 -1.5952 22 1 13.7165 -3.1111 -2.7220 23 1 11.3169 -2.8132 -2.9057 24 6 8.1532 -1.7928 0.9904 25 6 7.1261 -1.1368 1.6427 26 6 4.0546 -1.4191 -0.0467 27 6 3.4863 -0.6779 -1.2591 28 7 2.0191 -0.6918 -1.1993 29 1 -0.3634 0.5142 0.8897 30 1 -0.3632 0.5134 -0.8903 31 1 -0.3632 -1.0277 0.0005 32 1 1.6658 -1.7447 1.2577 33 1 1.6895 -0.1981 2.1400 34 1 3.5910 1.3468 0.8245 35 1 7.2017 1.7880 -0.0360 36 1 9.0371 0.6226 -1.1918 37 1 10.0312 -1.5178 -1.7615 38 1 9.7756 -2.9446 -0.7286 39 1 14.4010 -2.2826 -0.2018 40 1 8.4185 -2.7999 1.2767 41 1 6.5891 -1.6311 2.4387 42 1 5.1438 -1.3950 -0.0832 43 1 3.7122 -2.4538 -0.0594 44 1 3.8173 -1.1702 -2.1736 45 1 3.8403 0.3530 -1.2530 46 1 1.6644 -1.6353 -1.2424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886884961.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:26 Heat of formation + Delta-G solvation = -63.500561 kcal Electronic energy + Delta-G solvation = -27804.087152 eV Core-core repulsion = 24012.602558 eV Total energy + Delta-G solvation = -3791.484595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.85183 -38.92956 -37.19367 -35.82237 -34.83835 -33.71744 -32.59739 -31.76705 -30.69068 -30.04733 -28.01632 -27.36369 -23.80542 -23.51389 -22.44935 -22.00338 -20.88790 -20.63938 -19.31340 -17.95010 -17.44436 -16.93639 -16.57854 -15.76669 -15.51517 -15.25532 -15.06734 -14.64123 -14.52610 -14.33030 -14.09859 -13.91046 -13.75102 -13.22132 -13.12451 -12.76550 -12.67925 -12.46042 -12.30369 -12.10200 -12.01929 -11.91931 -11.88405 -11.81112 -11.68673 -11.35152 -11.20538 -11.08348 -10.99070 -10.95115 -10.55587 -10.26264 -10.14056 -9.73964 -9.55540 -8.72988 -8.69360 -8.64849 -8.47296 -6.20761 -4.22492 0.43910 1.22155 1.69300 2.98321 3.18102 3.26856 3.27336 3.69783 3.88588 4.03004 4.28339 4.29443 4.34513 4.45759 4.53932 4.72233 4.91157 4.94511 5.06232 5.11173 5.14591 5.16555 5.21711 5.26385 5.36432 5.49880 5.53984 5.57614 5.67948 5.70294 5.73257 5.78706 5.82051 5.84379 5.97200 6.11813 6.20544 6.40291 6.65918 6.67108 6.71722 6.74825 6.78227 7.06282 7.25219 7.26884 7.51028 8.32070 8.82853 9.37369 10.91755 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017125 B = 0.003070 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.621282 B = 9118.097937 C =10098.067083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.081 3.919 3 H 0.081 0.919 4 C -0.156 4.156 5 C 0.152 3.848 6 H 0.094 0.906 7 N -1.113 6.113 8 S 2.696 3.304 9 O -0.964 6.964 10 O -0.965 6.965 11 C -0.699 4.699 12 C -0.019 4.019 13 C -0.142 4.142 14 C 0.032 3.968 15 C 0.006 3.994 16 C -0.520 4.520 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.894 5.894 20 Si 0.879 3.121 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.265 1.265 24 C -0.143 4.143 25 C -0.023 4.023 26 C -0.183 4.183 27 C 0.059 3.941 28 N -0.681 5.681 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.414 0.586 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.034 0.966 38 H 0.029 0.971 39 H 0.266 0.734 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.000 1.251 -1.487 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 H 0.099 0.901 4 C -0.197 4.197 5 C 0.045 3.955 6 H 0.112 0.888 7 N -0.872 5.872 8 S 2.789 3.211 9 O -0.954 6.954 10 O -0.955 6.955 11 C -0.788 4.788 12 C -0.039 4.039 13 C -0.161 4.161 14 C 0.032 3.968 15 C -0.031 4.031 16 C -0.558 4.558 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.532 5.532 20 Si 0.706 3.294 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.189 1.189 24 C -0.162 4.162 25 C -0.043 4.043 26 C -0.224 4.224 27 C -0.070 4.070 28 N -0.310 5.310 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.250 0.750 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -25.722 2.166 -1.055 25.834 hybrid contribution 0.787 -1.443 -0.697 1.785 sum -24.935 0.723 -1.752 25.007 Atomic orbital electron populations 1.21802 0.94152 1.02071 1.02239 1.21566 0.95352 0.98415 0.87616 0.90118 1.22553 0.94424 1.02269 1.00430 1.20795 0.94809 0.81419 0.98472 0.88785 1.55706 1.42629 1.15895 1.72997 1.01622 0.72698 0.73213 0.73593 1.93563 1.86042 1.78276 1.37520 1.93574 1.85016 1.30476 1.86467 1.30338 1.23341 1.08858 1.16288 1.20752 0.93392 0.98140 0.91568 1.21213 0.97847 0.95237 1.01794 1.20689 0.91379 0.93231 0.91507 1.18982 0.92486 0.95439 0.96180 1.20814 0.88806 1.32128 1.14061 0.90683 1.24988 0.95270 0.95951 0.96825 1.69887 0.98596 1.44402 1.40268 0.86791 0.77834 0.81265 0.83520 1.20048 1.21061 1.18935 1.21204 0.96539 1.01122 0.97293 1.20743 0.95624 0.91870 0.96034 1.22844 1.03267 0.99946 0.96293 1.21956 0.86816 1.01292 0.96960 1.60728 1.08949 1.22356 1.38962 0.92092 0.91759 0.92702 0.90480 0.90382 0.75032 0.85157 0.85277 0.94820 0.95288 0.92352 0.85323 0.85303 0.89816 0.90727 0.90456 0.90568 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.47 37.16 0.35 -0.43 16 2 C 0.08 0.51 2.86 -67.72 -0.19 0.32 16 3 H 0.08 0.55 6.62 -51.93 -0.34 0.20 16 4 C -0.16 -1.00 5.05 -26.65 -0.13 -1.13 16 5 C 0.15 1.24 3.14 -67.81 -0.21 1.02 16 6 H 0.09 0.81 7.50 -51.93 -0.39 0.42 16 7 N -1.11 -10.16 4.83 -4.79 -0.02 -10.18 16 8 S 2.70 35.49 5.72 -107.50 -0.61 34.88 16 9 O -0.96 -15.07 16.62 -57.17 -0.95 -16.02 16 10 O -0.97 -15.18 17.28 -57.17 -0.99 -16.17 16 11 C -0.70 -10.23 5.03 -39.58 -0.20 -10.43 16 12 C -0.02 -0.29 9.52 -39.58 -0.38 -0.67 16 13 C -0.14 -2.48 9.70 -39.58 -0.38 -2.86 16 14 C 0.03 0.62 5.07 -104.62 -0.53 0.09 16 15 C 0.01 0.14 4.17 -29.03 -0.12 0.02 16 16 C -0.52 -14.15 9.65 -34.44 -0.33 -14.49 16 17 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 18 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 19 N -0.89 -26.66 13.96 55.43 0.77 -25.89 16 20 Si 0.88 20.44 27.47 -169.99 -4.67 15.77 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 24 C -0.14 -2.45 9.70 -39.59 -0.38 -2.84 16 25 C -0.02 -0.35 8.67 -39.58 -0.34 -0.69 16 26 C -0.18 -1.46 5.78 -26.65 -0.15 -1.61 16 27 C 0.06 0.46 6.41 -3.83 -0.02 0.44 16 28 N -0.68 -4.73 6.50 -106.75 -0.69 -5.42 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.41 3.11 6.98 -34.46 -0.24 2.87 16 35 H 0.13 1.73 7.62 -52.49 -0.40 1.33 16 36 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 37 H 0.03 0.73 7.14 -51.93 -0.37 0.36 16 38 H 0.03 0.62 7.51 -51.93 -0.39 0.23 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.13 2.08 8.06 -52.48 -0.42 1.66 16 41 H 0.13 1.67 7.62 -52.49 -0.40 1.27 16 42 H 0.08 0.81 6.23 -51.93 -0.32 0.49 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.64 7.54 -51.93 -0.39 0.24 16 46 H 0.34 2.03 8.79 -39.30 -0.35 1.68 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -33.21 375.78 -11.63 -44.84 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.99 Total: 3.88 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: -3.14 Total: -31.35 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.06 Total: -41.50 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.94 Total: -32.19 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.77 kcal Atomic # 16 Polarization: 35.49 SS G_CDS: -0.61 Total: 34.88 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.21 -11.63 -44.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886884961.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.661 kcal (2) G-P(sol) polarization free energy of solvation -33.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds