Wall clock time and date at job start Sat Apr 11 2020 05:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46281 * 2 1 4 4 C 1.53044 * 109.46070 * 119.97262 * 2 1 3 5 5 C 1.53123 * 109.27811 * 179.18850 * 4 2 1 6 6 H 1.08998 * 109.52164 * 182.37825 * 5 4 2 7 7 N 1.46498 * 109.52373 * 62.25040 * 5 4 2 8 8 S 1.65591 * 120.00160 * 144.99928 * 7 5 4 9 9 O 1.42101 * 106.40397 * 311.46340 * 8 7 5 10 10 O 1.42101 * 106.40594 * 178.54262 * 8 7 5 11 11 C 1.76202 * 107.21658 * 65.00045 * 8 7 5 12 12 C 1.38234 * 119.99766 * 90.00556 * 11 8 7 13 13 C 1.38238 * 119.99969 * 179.97438 * 12 11 8 14 14 C 1.38234 * 119.99631 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99722 * 179.97438 * 14 13 12 16 16 C 1.50708 * 109.46925 * 90.00252 * 15 14 13 17 17 H 1.07991 * 119.99789 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00008 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00089 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99938 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 269.99556 * 20 18 16 22 22 H 1.48503 * 109.47261 * 149.99737 * 20 18 16 23 23 H 1.48500 * 109.47454 * 29.99730 * 20 18 16 24 24 C 1.38233 * 120.00279 * 0.25633 * 14 13 12 25 25 C 1.38230 * 119.99970 * 359.48985 * 24 14 13 26 26 C 1.53119 * 109.15872 * 302.34599 * 5 4 2 27 27 C 1.53041 * 109.27742 * 57.65472 * 26 5 4 28 28 N 1.46842 * 109.45595 * 240.02188 * 2 1 3 29 29 H 1.08998 * 109.47562 * 300.02828 * 1 2 3 30 30 H 1.09004 * 109.46520 * 60.02808 * 1 2 3 31 31 H 1.09000 * 109.46576 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.50276 * 59.24955 * 4 2 1 33 33 H 1.09002 * 109.50037 * 299.13047 * 4 2 1 34 34 H 0.97008 * 120.00281 * 325.00454 * 7 5 4 35 35 H 1.07996 * 120.00637 * 359.97438 * 12 11 8 36 36 H 1.07994 * 120.00210 * 179.97438 * 13 12 11 37 37 H 1.08994 * 109.47874 * 330.00433 * 15 14 13 38 38 H 1.09000 * 109.47408 * 210.00258 * 15 14 13 39 39 H 0.96997 * 119.99848 * 180.02562 * 19 18 16 40 40 H 1.08007 * 119.99940 * 179.72370 * 24 14 13 41 41 H 1.07994 * 120.00303 * 180.25151 * 25 24 14 42 42 H 1.09003 * 109.50329 * 177.59072 * 26 5 4 43 43 H 1.08998 * 109.50395 * 297.71772 * 26 5 4 44 44 H 1.09007 * 109.45937 * 180.80053 * 27 26 5 45 45 H 1.08998 * 109.45277 * 60.83192 * 27 26 5 46 46 H 1.00891 * 111.00064 * 302.34413 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 3.5710 -0.7362 1.2356 6 1 3.9379 -1.2855 2.1026 7 7 4.0748 0.6388 1.2780 8 16 5.4700 0.9844 2.1002 9 8 5.3462 0.3714 3.3762 10 8 5.7047 2.3750 1.9256 11 6 6.7832 0.1503 1.2729 12 6 7.4701 0.7828 0.2536 13 6 8.5007 0.1287 -0.3952 14 6 8.8439 -1.1582 -0.0249 15 6 9.9671 -1.8715 -0.7325 16 6 11.2666 -1.5906 -0.0229 17 1 11.2779 -0.9590 0.8530 18 6 12.4409 -2.1406 -0.4915 19 7 13.5749 -1.8959 0.1281 20 14 12.4212 -3.2336 -2.0062 21 1 12.2145 -4.6456 -1.5952 22 1 13.7165 -3.1111 -2.7220 23 1 11.3169 -2.8132 -2.9057 24 6 8.1532 -1.7928 0.9904 25 6 7.1261 -1.1368 1.6427 26 6 4.0546 -1.4191 -0.0467 27 6 3.4863 -0.6779 -1.2591 28 7 2.0191 -0.6918 -1.1993 29 1 -0.3634 0.5142 0.8897 30 1 -0.3632 0.5134 -0.8903 31 1 -0.3632 -1.0277 0.0005 32 1 1.6658 -1.7447 1.2577 33 1 1.6895 -0.1981 2.1400 34 1 3.5910 1.3468 0.8245 35 1 7.2017 1.7880 -0.0360 36 1 9.0371 0.6226 -1.1918 37 1 10.0312 -1.5178 -1.7615 38 1 9.7756 -2.9446 -0.7286 39 1 14.4010 -2.2826 -0.2018 40 1 8.4185 -2.7999 1.2767 41 1 6.5891 -1.6311 2.4387 42 1 5.1438 -1.3950 -0.0832 43 1 3.7122 -2.4538 -0.0594 44 1 3.8173 -1.1702 -2.1736 45 1 3.8403 0.3530 -1.2530 46 1 1.6644 -1.6353 -1.2424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886884961.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:25 Heat of formation + Delta-G solvation = -87.878176 kcal Electronic energy + Delta-G solvation = -27805.144245 eV Core-core repulsion = 24012.602558 eV Total energy + Delta-G solvation = -3792.541687 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.49913 -40.20537 -38.37293 -37.01145 -35.60544 -35.46512 -33.57354 -33.11920 -31.97671 -30.72980 -29.71777 -27.86516 -25.29000 -24.39127 -23.72710 -22.54329 -22.32319 -21.46088 -20.28264 -19.03754 -19.00686 -18.52487 -17.41933 -16.79587 -16.58648 -16.29527 -15.98811 -15.87327 -15.71686 -15.35464 -15.14673 -14.72773 -14.64713 -14.52230 -14.46071 -14.13190 -13.63422 -13.62521 -13.45971 -13.29728 -13.21586 -13.02278 -12.84677 -12.65501 -12.56687 -12.51249 -12.30923 -12.07534 -11.95222 -11.89624 -11.73969 -11.71227 -11.66754 -11.50678 -10.83453 -10.52478 -9.96115 -9.91984 -9.20148 -8.34336 -6.41622 -0.65294 -0.08388 0.39313 1.35422 1.37419 1.48668 1.98149 2.31821 2.52413 2.79429 3.00186 3.28124 3.37196 3.73080 3.83905 3.88621 3.90647 3.96851 4.07838 4.16053 4.28606 4.40749 4.45866 4.47452 4.52681 4.65545 4.75976 4.78050 4.84812 4.87786 4.98960 4.99570 5.04743 5.09298 5.11586 5.14938 5.17029 5.26686 5.28963 5.38058 5.42521 5.48829 5.77844 5.93085 6.03355 6.18292 6.18472 6.59051 6.65178 7.22380 8.82137 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017125 B = 0.003070 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.621282 B = 9118.097937 C =10098.067083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.080 3.920 3 H 0.076 0.924 4 C -0.150 4.150 5 C 0.146 3.854 6 H 0.093 0.907 7 N -1.096 6.096 8 S 2.722 3.278 9 O -0.985 6.985 10 O -0.989 6.989 11 C -0.695 4.695 12 C -0.019 4.019 13 C -0.153 4.153 14 C 0.000 4.000 15 C 0.012 3.988 16 C -0.526 4.526 17 H 0.026 0.974 18 C 0.009 3.991 19 N -0.948 5.948 20 Si 0.953 3.047 21 H -0.263 1.263 22 H -0.285 1.285 23 H -0.241 1.241 24 C -0.151 4.151 25 C -0.019 4.019 26 C -0.179 4.179 27 C 0.061 3.939 28 N -0.684 5.684 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.425 0.575 35 H 0.151 0.849 36 H 0.132 0.868 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.269 0.731 40 H 0.134 0.866 41 H 0.153 0.847 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.905 0.464 -2.431 29.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.030 4.030 3 H 0.094 0.906 4 C -0.191 4.191 5 C 0.039 3.961 6 H 0.111 0.889 7 N -0.859 5.859 8 S 2.812 3.188 9 O -0.974 6.974 10 O -0.979 6.979 11 C -0.782 4.782 12 C -0.038 4.038 13 C -0.172 4.172 14 C 0.000 4.000 15 C -0.025 4.025 16 C -0.564 4.564 17 H 0.044 0.956 18 C -0.189 4.189 19 N -0.587 5.587 20 Si 0.776 3.224 21 H -0.188 1.188 22 H -0.211 1.211 23 H -0.164 1.164 24 C -0.170 4.170 25 C -0.038 4.038 26 C -0.220 4.220 27 C -0.069 4.069 28 N -0.314 5.314 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.263 0.737 35 H 0.169 0.831 36 H 0.150 0.850 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.152 0.848 41 H 0.170 0.830 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -28.645 1.381 -2.009 28.749 hybrid contribution 1.569 -1.116 -0.303 1.949 sum -27.077 0.265 -2.312 27.176 Atomic orbital electron populations 1.21765 0.93274 1.02548 1.02290 1.21597 0.96014 0.98083 0.87340 0.90589 1.22534 0.92718 1.03261 1.00552 1.21008 0.96170 0.80368 0.98549 0.88911 1.55351 1.40876 1.17039 1.72619 1.00824 0.72730 0.72103 0.73122 1.93539 1.86411 1.78547 1.38951 1.93540 1.85647 1.31924 1.86779 1.30706 1.23508 1.08617 1.15371 1.20972 0.92572 0.98917 0.91314 1.21318 0.98615 0.94855 1.02364 1.20553 0.91976 0.94294 0.93163 1.18821 0.91085 0.96469 0.96131 1.21066 0.91605 1.30852 1.12830 0.95581 1.26014 0.94590 0.97706 1.00579 1.70058 0.99578 1.46420 1.42691 0.85615 0.78431 0.79209 0.79160 1.18835 1.21070 1.16448 1.21317 0.97020 1.01601 0.97038 1.20974 0.94845 0.91981 0.95992 1.22810 1.02158 1.00790 0.96245 1.21900 0.87419 1.00776 0.96790 1.60717 1.08301 1.22967 1.39366 0.91418 0.92353 0.92021 0.89025 0.90008 0.73726 0.83091 0.85043 0.94189 0.94191 0.92234 0.84840 0.82973 0.91493 0.89396 0.90658 0.91283 0.83514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.47 71.98 0.68 -0.49 16 2 C 0.08 0.81 2.86 44.94 0.13 0.94 16 3 H 0.08 0.85 6.62 -2.39 -0.02 0.83 16 4 C -0.15 -1.48 5.05 30.65 0.15 -1.32 16 5 C 0.15 2.01 3.14 45.07 0.14 2.15 16 6 H 0.09 1.36 7.50 -2.39 -0.02 1.34 16 7 N -1.10 -17.71 4.83 -169.06 -0.82 -18.53 16 8 S 2.72 67.21 5.72 -56.49 -0.32 66.89 16 9 O -0.98 -29.07 16.62 -128.00 -2.13 -31.20 16 10 O -0.99 -29.65 17.28 -128.00 -2.21 -31.86 16 11 C -0.69 -19.47 5.03 22.27 0.11 -19.36 16 12 C -0.02 -0.55 9.52 22.27 0.21 -0.34 16 13 C -0.15 -5.32 9.70 22.27 0.22 -5.10 16 14 C 0.00 0.02 5.07 -19.87 -0.10 -0.08 16 15 C 0.01 0.54 4.17 29.11 0.12 0.66 16 16 C -0.53 -29.54 9.65 25.60 0.25 -29.29 16 17 H 0.03 1.66 7.98 -2.92 -0.02 1.64 16 18 C 0.01 0.49 5.47 84.65 0.46 0.95 16 19 N -0.95 -58.54 13.96 21.45 0.30 -58.24 16 20 Si 0.95 42.10 27.47 68.60 1.88 43.98 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 24 C -0.15 -5.14 9.70 22.27 0.22 -4.93 16 25 C -0.02 -0.54 8.67 22.27 0.19 -0.35 16 26 C -0.18 -2.47 5.78 30.65 0.18 -2.30 16 27 C 0.06 0.83 6.41 86.33 0.55 1.39 16 28 N -0.68 -7.92 6.50 -491.66 -3.20 -11.11 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.42 5.45 6.98 -96.74 -0.68 4.77 16 35 H 0.15 3.80 7.62 -2.91 -0.02 3.78 16 36 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 37 H 0.04 1.71 7.14 -2.39 -0.02 1.69 16 38 H 0.04 1.67 7.51 -2.39 -0.02 1.65 16 39 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 40 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 41 H 0.15 3.64 7.62 -2.91 -0.02 3.62 16 42 H 0.07 1.18 6.23 -2.39 -0.01 1.16 16 43 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.07 1.03 7.54 -2.39 -0.02 1.01 16 46 H 0.35 3.23 8.79 -89.70 -0.79 2.44 16 Total: -1.00 -73.14 375.78 -3.50 -76.64 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -0.52 Total: 20.90 kcal Atomic # 6 Polarization: -60.99 SS G_CDS: 3.52 Total: -57.47 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -3.71 Total: -87.88 kcal Atomic # 8 Polarization: -58.72 SS G_CDS: -4.34 Total: -63.06 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.88 Total: 43.98 kcal Atomic # 16 Polarization: 67.21 SS G_CDS: -0.32 Total: 66.89 kcal Total: -73.14 -3.50 -76.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886884961.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.236 kcal (2) G-P(sol) polarization free energy of solvation -73.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds