Wall clock time and date at job start Sat Apr 11 2020 05:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46208 * 2 1 4 4 C 1.53037 * 109.45684 * 119.96897 * 2 1 3 5 5 C 1.53121 * 109.27413 * 179.19356 * 4 2 1 6 6 H 1.09006 * 109.57425 * 62.28092 * 5 4 2 7 7 N 1.46501 * 109.52183 * 182.43911 * 5 4 2 8 8 S 1.65608 * 120.00079 * 214.68167 * 7 5 4 9 9 O 1.42099 * 106.40241 * 178.54028 * 8 7 5 10 10 O 1.42097 * 106.39895 * 311.46103 * 8 7 5 11 11 C 1.76196 * 107.21621 * 65.00284 * 8 7 5 12 12 C 1.38236 * 119.99813 * 269.72930 * 11 8 7 13 13 C 1.38241 * 119.99767 * 179.78728 * 12 11 8 14 14 C 1.38233 * 119.99925 * 0.46461 * 13 12 11 15 15 C 1.50707 * 119.99594 * 179.78930 * 14 13 12 16 16 C 1.50701 * 109.46874 * 269.97152 * 15 14 13 17 17 H 1.07998 * 120.00343 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99693 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00042 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00023 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47278 * 90.00102 * 20 18 16 22 22 H 1.48491 * 109.47488 * 210.00154 * 20 18 16 23 23 H 1.48500 * 109.47497 * 330.00513 * 20 18 16 24 24 C 1.38231 * 119.99905 * 359.76242 * 14 13 12 25 25 C 1.38225 * 120.00421 * 0.02875 * 24 14 13 26 26 C 1.53123 * 109.16163 * 302.34549 * 5 4 2 27 27 C 1.53037 * 109.27609 * 57.65731 * 26 5 4 28 28 N 1.46842 * 109.45900 * 240.02027 * 2 1 3 29 29 H 1.08992 * 109.47411 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46953 * 299.97943 * 1 2 3 31 31 H 1.09000 * 109.46990 * 59.97898 * 1 2 3 32 32 H 1.08995 * 109.50789 * 59.25942 * 4 2 1 33 33 H 1.08997 * 109.50585 * 299.12774 * 4 2 1 34 34 H 0.97002 * 120.00027 * 34.68678 * 7 5 4 35 35 H 1.08001 * 120.00234 * 359.97438 * 12 11 8 36 36 H 1.08006 * 119.99943 * 180.24699 * 13 12 11 37 37 H 1.08991 * 109.47230 * 29.97766 * 15 14 13 38 38 H 1.08998 * 109.46465 * 149.97676 * 15 14 13 39 39 H 0.96996 * 119.99902 * 180.02562 * 19 18 16 40 40 H 1.08007 * 119.99571 * 179.97438 * 24 14 13 41 41 H 1.07997 * 120.00500 * 179.97438 * 25 24 14 42 42 H 1.09001 * 109.50040 * 177.59843 * 26 5 4 43 43 H 1.08993 * 109.50033 * 297.67296 * 26 5 4 44 44 H 1.08990 * 109.46673 * 60.83653 * 27 26 5 45 45 H 1.09005 * 109.45825 * 180.80747 * 27 26 5 46 46 H 1.00900 * 111.00311 * 302.33609 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7208 1.2500 5 6 3.5709 -0.7360 1.2357 6 1 3.9466 0.2868 1.2677 7 7 4.0640 -1.4755 2.4003 8 16 5.4641 -1.0039 3.1485 9 8 5.6497 -1.8870 4.2461 10 8 6.4291 -0.8285 2.1202 11 6 5.1753 0.5920 3.8373 12 6 5.4407 1.7251 3.0913 13 6 5.2099 2.9771 3.6301 14 6 4.7229 3.0960 4.9184 15 6 4.4759 4.4610 5.5074 16 6 5.7230 4.9404 6.2047 17 1 6.6062 4.3190 6.2194 18 6 5.7363 6.1722 6.8238 19 7 4.6606 6.9287 6.8063 20 14 7.2822 6.7668 7.6875 21 1 8.1287 7.5180 6.7259 22 1 6.9078 7.6556 8.8166 23 1 8.0394 5.5995 8.2065 24 6 4.4621 1.9630 5.6660 25 6 4.6887 0.7110 5.1257 26 6 4.0547 -1.4189 -0.0466 27 6 3.4865 -0.6778 -1.2590 28 7 2.0192 -0.6918 -1.1993 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5135 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 1.6659 -1.7446 1.2578 33 1 1.6895 -0.1980 2.1399 34 1 3.5705 -2.2414 2.7331 35 1 5.8254 1.6322 2.0864 36 1 5.4134 3.8623 3.0459 37 1 4.2137 5.1581 4.7117 38 1 3.6574 4.4042 6.2250 39 1 4.6701 7.7955 7.2415 40 1 4.0820 2.0560 6.6727 41 1 4.4853 -0.1742 5.7100 42 1 5.1438 -1.3949 -0.0829 43 1 3.7130 -2.4538 -0.0588 44 1 3.8403 0.3530 -1.2532 45 1 3.8175 -1.1702 -2.1734 46 1 1.6646 -1.6355 -1.2423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886884962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:29 Heat of formation + Delta-G solvation = -71.432708 kcal Electronic energy + Delta-G solvation = -27408.216097 eV Core-core repulsion = 23616.387538 eV Total energy + Delta-G solvation = -3791.828558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.60972 -38.84347 -37.16504 -35.80316 -35.20486 -33.70894 -32.60404 -31.59313 -30.62669 -29.84134 -27.47234 -27.31905 -23.76168 -23.46709 -22.40876 -21.87992 -21.05334 -20.85125 -19.43982 -17.88114 -17.41389 -16.59478 -16.45819 -15.65021 -15.43677 -15.23846 -15.09893 -14.71496 -14.41072 -14.36091 -14.21167 -13.92049 -13.55316 -13.16009 -12.91600 -12.83782 -12.39485 -12.33782 -12.24117 -12.05037 -12.02734 -11.94296 -11.79510 -11.72774 -11.51752 -11.33093 -11.23130 -10.97809 -10.95141 -10.89702 -10.53469 -10.51491 -9.82383 -9.72895 -9.58703 -8.73757 -8.63479 -8.56166 -8.42364 -6.19435 -4.24583 0.46035 1.28052 1.74753 2.98967 3.22828 3.29493 3.33796 3.71350 3.90775 4.07341 4.26532 4.35301 4.42313 4.51360 4.62542 4.76089 4.81888 5.00086 5.11441 5.14504 5.18356 5.19976 5.22635 5.33782 5.43465 5.51846 5.56265 5.68140 5.71421 5.74346 5.78340 5.86416 5.87007 5.90875 6.02239 6.20434 6.28347 6.46127 6.71441 6.75868 6.79795 6.87068 7.06555 7.25740 7.39245 7.55528 7.75597 8.10526 8.80176 9.40565 10.90586 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014270 B = 0.002967 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.676920 B = 9434.628323 C =10510.644581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.083 3.917 3 H 0.086 0.914 4 C -0.158 4.158 5 C 0.156 3.844 6 H 0.088 0.912 7 N -1.115 6.115 8 S 2.696 3.304 9 O -0.967 6.967 10 O -0.963 6.963 11 C -0.704 4.704 12 C -0.026 4.026 13 C -0.145 4.145 14 C 0.028 3.972 15 C 0.039 3.961 16 C -0.518 4.518 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.899 3.101 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C -0.145 4.145 25 C -0.022 4.022 26 C -0.177 4.177 27 C 0.058 3.942 28 N -0.682 5.682 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.415 0.585 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.264 0.736 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.602 -16.953 -14.087 23.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 H 0.104 0.896 4 C -0.199 4.199 5 C 0.049 3.951 6 H 0.106 0.894 7 N -0.872 5.872 8 S 2.788 3.212 9 O -0.958 6.958 10 O -0.952 6.952 11 C -0.794 4.794 12 C -0.046 4.046 13 C -0.164 4.164 14 C 0.027 3.973 15 C 0.003 3.997 16 C -0.556 4.556 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.529 5.529 20 Si 0.726 3.274 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.164 4.164 25 C -0.041 4.041 26 C -0.218 4.218 27 C -0.072 4.072 28 N -0.311 5.311 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.249 0.751 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.862 -16.561 -14.464 23.034 hybrid contribution 0.500 0.095 1.715 1.789 sum -6.361 -16.466 -12.749 21.774 Atomic orbital electron populations 1.21791 0.93932 1.01987 1.02489 1.21593 0.95603 0.98656 0.86921 0.89569 1.22653 0.94414 1.02112 1.00716 1.20770 0.94699 0.95280 0.84367 0.89433 1.55723 1.46438 1.42835 1.42244 1.01646 0.72650 0.73804 0.73056 1.93566 1.84510 1.64058 1.53640 1.93558 1.57270 1.86731 1.57688 1.30306 1.21973 1.20456 1.06640 1.20784 0.93552 0.91867 0.98387 1.21250 1.01723 0.96970 0.96408 1.21126 0.86175 0.98077 0.91907 1.18541 0.98153 0.86531 0.96514 1.20966 0.97490 1.02443 1.34734 0.92292 1.25003 0.96557 0.96495 0.96066 1.69945 1.27931 1.11262 1.43802 0.86474 0.82857 0.78810 0.79245 1.20419 1.21012 1.19697 1.21252 1.02858 0.91694 1.00596 1.20763 0.92554 0.98429 0.92370 1.22857 1.03288 1.00314 0.95364 1.22027 0.87069 1.01295 0.96843 1.60709 1.08776 1.22304 1.39272 0.92818 0.91871 0.91640 0.91226 0.90250 0.75137 0.85336 0.85307 0.94692 0.94706 0.92605 0.85321 0.85308 0.89596 0.91418 0.90392 0.90179 0.84321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.47 37.16 0.35 -0.58 16 2 C 0.08 0.61 3.03 -67.72 -0.21 0.40 16 3 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.16 -1.17 4.89 -26.65 -0.13 -1.30 16 5 C 0.16 1.38 2.72 -67.80 -0.18 1.20 16 6 H 0.09 0.84 7.25 -51.93 -0.38 0.46 16 7 N -1.12 -10.66 5.48 -4.78 -0.03 -10.68 16 8 S 2.70 36.53 5.65 -107.50 -0.61 35.92 16 9 O -0.97 -15.52 17.28 -57.17 -0.99 -16.51 16 10 O -0.96 -15.04 16.59 -57.17 -0.95 -15.98 16 11 C -0.70 -10.87 5.82 -39.58 -0.23 -11.10 16 12 C -0.03 -0.42 8.92 -39.58 -0.35 -0.77 16 13 C -0.14 -2.63 9.70 -39.58 -0.38 -3.01 16 14 C 0.03 0.56 5.07 -104.62 -0.53 0.03 16 15 C 0.04 0.95 5.10 -29.03 -0.15 0.80 16 16 C -0.52 -13.98 9.09 -34.44 -0.31 -14.29 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 20 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 24 C -0.15 -2.66 9.70 -39.59 -0.38 -3.05 16 25 C -0.02 -0.35 9.52 -39.59 -0.38 -0.73 16 26 C -0.18 -1.44 5.69 -26.65 -0.15 -1.60 16 27 C 0.06 0.42 6.55 -3.83 -0.03 0.40 16 28 N -0.68 -4.86 6.50 -106.76 -0.69 -5.56 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.41 3.08 8.84 -34.48 -0.30 2.78 16 35 H 0.13 1.74 7.61 -52.49 -0.40 1.34 16 36 H 0.13 2.22 8.06 -52.48 -0.42 1.80 16 37 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.13 2.25 8.06 -52.48 -0.42 1.82 16 41 H 0.13 1.80 7.62 -52.49 -0.40 1.40 16 42 H 0.09 0.83 7.69 -51.93 -0.40 0.43 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.34 2.04 8.79 -39.29 -0.35 1.70 16 LS Contribution 385.80 15.07 5.81 5.81 Total: -1.00 -32.25 385.80 -12.15 -44.40 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.26 Total: 3.22 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: -3.16 Total: -32.01 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.02 Total: -40.88 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.94 Total: -32.50 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 36.53 SS G_CDS: -0.61 Total: 35.92 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.25 -12.15 -44.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886884962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.031 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds