Wall clock time and date at job start Sat Apr 11 2020 05:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46208 * 2 1 4 4 C 1.53037 * 109.45684 * 119.96897 * 2 1 3 5 5 C 1.53121 * 109.27413 * 179.19356 * 4 2 1 6 6 H 1.09006 * 109.57425 * 62.28092 * 5 4 2 7 7 N 1.46501 * 109.52183 * 182.43911 * 5 4 2 8 8 S 1.65608 * 120.00079 * 214.68167 * 7 5 4 9 9 O 1.42099 * 106.40241 * 178.54028 * 8 7 5 10 10 O 1.42097 * 106.39895 * 311.46103 * 8 7 5 11 11 C 1.76196 * 107.21621 * 65.00284 * 8 7 5 12 12 C 1.38236 * 119.99813 * 269.72930 * 11 8 7 13 13 C 1.38241 * 119.99767 * 179.78728 * 12 11 8 14 14 C 1.38233 * 119.99925 * 0.46461 * 13 12 11 15 15 C 1.50707 * 119.99594 * 179.78930 * 14 13 12 16 16 C 1.50701 * 109.46874 * 269.97152 * 15 14 13 17 17 H 1.07998 * 120.00343 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99693 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00042 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00023 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47278 * 90.00102 * 20 18 16 22 22 H 1.48491 * 109.47488 * 210.00154 * 20 18 16 23 23 H 1.48500 * 109.47497 * 330.00513 * 20 18 16 24 24 C 1.38231 * 119.99905 * 359.76242 * 14 13 12 25 25 C 1.38225 * 120.00421 * 0.02875 * 24 14 13 26 26 C 1.53123 * 109.16163 * 302.34549 * 5 4 2 27 27 C 1.53037 * 109.27609 * 57.65731 * 26 5 4 28 28 N 1.46842 * 109.45900 * 240.02027 * 2 1 3 29 29 H 1.08992 * 109.47411 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46953 * 299.97943 * 1 2 3 31 31 H 1.09000 * 109.46990 * 59.97898 * 1 2 3 32 32 H 1.08995 * 109.50789 * 59.25942 * 4 2 1 33 33 H 1.08997 * 109.50585 * 299.12774 * 4 2 1 34 34 H 0.97002 * 120.00027 * 34.68678 * 7 5 4 35 35 H 1.08001 * 120.00234 * 359.97438 * 12 11 8 36 36 H 1.08006 * 119.99943 * 180.24699 * 13 12 11 37 37 H 1.08991 * 109.47230 * 29.97766 * 15 14 13 38 38 H 1.08998 * 109.46465 * 149.97676 * 15 14 13 39 39 H 0.96996 * 119.99902 * 180.02562 * 19 18 16 40 40 H 1.08007 * 119.99571 * 179.97438 * 24 14 13 41 41 H 1.07997 * 120.00500 * 179.97438 * 25 24 14 42 42 H 1.09001 * 109.50040 * 177.59843 * 26 5 4 43 43 H 1.08993 * 109.50033 * 297.67296 * 26 5 4 44 44 H 1.08990 * 109.46673 * 60.83653 * 27 26 5 45 45 H 1.09005 * 109.45825 * 180.80747 * 27 26 5 46 46 H 1.00900 * 111.00311 * 302.33609 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7208 1.2500 5 6 3.5709 -0.7360 1.2357 6 1 3.9466 0.2868 1.2677 7 7 4.0640 -1.4755 2.4003 8 16 5.4641 -1.0039 3.1485 9 8 5.6497 -1.8870 4.2461 10 8 6.4291 -0.8285 2.1202 11 6 5.1753 0.5920 3.8373 12 6 5.4407 1.7251 3.0913 13 6 5.2099 2.9771 3.6301 14 6 4.7229 3.0960 4.9184 15 6 4.4759 4.4610 5.5074 16 6 5.7230 4.9404 6.2047 17 1 6.6062 4.3190 6.2194 18 6 5.7363 6.1722 6.8238 19 7 4.6606 6.9287 6.8063 20 14 7.2822 6.7668 7.6875 21 1 8.1287 7.5180 6.7259 22 1 6.9078 7.6556 8.8166 23 1 8.0394 5.5995 8.2065 24 6 4.4621 1.9630 5.6660 25 6 4.6887 0.7110 5.1257 26 6 4.0547 -1.4189 -0.0466 27 6 3.4865 -0.6778 -1.2590 28 7 2.0192 -0.6918 -1.1993 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5135 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 1.6659 -1.7446 1.2578 33 1 1.6895 -0.1980 2.1399 34 1 3.5705 -2.2414 2.7331 35 1 5.8254 1.6322 2.0864 36 1 5.4134 3.8623 3.0459 37 1 4.2137 5.1581 4.7117 38 1 3.6574 4.4042 6.2250 39 1 4.6701 7.7955 7.2415 40 1 4.0820 2.0560 6.6727 41 1 4.4853 -0.1742 5.7100 42 1 5.1438 -1.3949 -0.0829 43 1 3.7130 -2.4538 -0.0588 44 1 3.8403 0.3530 -1.2532 45 1 3.8175 -1.1702 -2.1734 46 1 1.6646 -1.6355 -1.2423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886884962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:28 Heat of formation + Delta-G solvation = -94.082396 kcal Electronic energy + Delta-G solvation = -27409.198261 eV Core-core repulsion = 23616.387538 eV Total energy + Delta-G solvation = -3792.810722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.32157 -40.18156 -38.35400 -37.00301 -35.95885 -35.60841 -33.34677 -33.17805 -31.99639 -30.55395 -29.27016 -27.88470 -25.61427 -24.13190 -23.74102 -22.52341 -22.50272 -21.61328 -20.50545 -19.00908 -18.62458 -18.46818 -17.48084 -16.87253 -16.60526 -16.15138 -16.02394 -15.99142 -15.63522 -15.31487 -15.25636 -14.85901 -14.63970 -14.48647 -14.34169 -13.95681 -13.47252 -13.42946 -13.42710 -13.27947 -13.19363 -13.10650 -12.91389 -12.71235 -12.68192 -12.59173 -12.48076 -12.20362 -12.06896 -11.89549 -11.80592 -11.68872 -11.58228 -11.40358 -10.66566 -10.47480 -9.99291 -9.97952 -9.30335 -8.28454 -6.41246 -0.66213 -0.09744 0.36524 1.37544 1.37901 1.49284 1.95590 2.33432 2.53022 2.78668 3.04277 3.27309 3.37396 3.65170 3.82697 3.85533 3.93027 3.98521 4.12516 4.13377 4.16661 4.40311 4.44545 4.45028 4.55340 4.64453 4.71655 4.78651 4.86681 4.88004 4.92672 5.01697 5.07276 5.12339 5.15662 5.22558 5.24549 5.25526 5.30734 5.38429 5.40656 5.65710 5.83927 5.89564 6.05568 6.08099 6.15019 6.58469 6.70503 7.27951 8.81613 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014270 B = 0.002967 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.676920 B = 9434.628323 C =10510.644581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.084 3.916 3 H 0.072 0.928 4 C -0.152 4.152 5 C 0.148 3.852 6 H 0.079 0.921 7 N -1.097 6.097 8 S 2.722 3.278 9 O -0.988 6.988 10 O -0.979 6.979 11 C -0.701 4.701 12 C -0.021 4.021 13 C -0.153 4.153 14 C -0.002 4.002 15 C 0.048 3.952 16 C -0.535 4.535 17 H 0.053 0.947 18 C 0.010 3.990 19 N -0.925 5.925 20 Si 0.964 3.036 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.155 4.155 25 C -0.019 4.019 26 C -0.173 4.173 27 C 0.060 3.940 28 N -0.683 5.683 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.428 0.572 35 H 0.154 0.846 36 H 0.130 0.870 37 H 0.014 0.986 38 H 0.013 0.987 39 H 0.268 0.732 40 H 0.130 0.870 41 H 0.154 0.846 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.392 -19.061 -14.981 25.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.027 4.027 3 H 0.090 0.910 4 C -0.193 4.193 5 C 0.041 3.959 6 H 0.097 0.903 7 N -0.859 5.859 8 S 2.813 3.187 9 O -0.978 6.978 10 O -0.969 6.969 11 C -0.788 4.788 12 C -0.040 4.040 13 C -0.172 4.172 14 C -0.002 4.002 15 C 0.011 3.989 16 C -0.573 4.573 17 H 0.071 0.929 18 C -0.189 4.189 19 N -0.564 5.564 20 Si 0.788 3.212 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.193 1.193 24 C -0.173 4.173 25 C -0.038 4.038 26 C -0.214 4.214 27 C -0.070 4.070 28 N -0.313 5.313 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.266 0.734 35 H 0.172 0.828 36 H 0.148 0.852 37 H 0.032 0.968 38 H 0.032 0.968 39 H 0.077 0.923 40 H 0.147 0.853 41 H 0.172 0.828 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.110 0.890 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.661 -18.665 -15.348 25.066 hybrid contribution 0.376 0.644 1.887 2.029 sum -6.285 -18.021 -13.461 23.355 Atomic orbital electron populations 1.21753 0.93196 1.02635 1.02248 1.21562 0.96142 0.98013 0.87032 0.90957 1.22612 0.93070 1.03073 1.00506 1.20964 0.95797 0.94900 0.84234 0.90271 1.55357 1.45593 1.43044 1.41892 1.00877 0.72997 0.72530 0.72339 1.93538 1.85286 1.64133 1.54819 1.93542 1.58713 1.86677 1.57949 1.30783 1.19962 1.21700 1.06355 1.21023 0.92590 0.90937 0.99421 1.21305 1.01902 0.98275 0.95721 1.20820 0.89368 0.96623 0.93397 1.18263 0.96592 0.88725 0.95271 1.21288 0.98243 1.02715 1.35019 0.92856 1.25855 0.99614 0.96662 0.96746 1.70051 1.29884 1.11712 1.44736 0.85464 0.79107 0.78339 0.78284 1.19629 1.20289 1.19295 1.21305 1.03239 0.92103 1.00695 1.21009 0.91705 0.98253 0.92818 1.22822 1.02371 1.01120 0.95089 1.22015 0.87169 1.00851 0.97001 1.60684 1.08595 1.22963 1.39090 0.91701 0.91954 0.92079 0.89538 0.90670 0.73437 0.82813 0.85182 0.96763 0.96825 0.92349 0.85254 0.82794 0.91014 0.90041 0.91264 0.89050 0.83302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.47 71.98 0.68 -0.90 16 2 C 0.08 1.08 3.03 44.94 0.14 1.22 16 3 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.15 -1.88 4.89 30.65 0.15 -1.73 16 5 C 0.15 2.29 2.72 45.07 0.12 2.41 16 6 H 0.08 1.39 7.25 -2.38 -0.02 1.37 16 7 N -1.10 -18.07 5.48 -169.04 -0.93 -19.00 16 8 S 2.72 67.68 5.65 -56.49 -0.32 67.36 16 9 O -0.99 -29.31 17.28 -128.00 -2.21 -31.53 16 10 O -0.98 -28.51 16.59 -128.00 -2.12 -30.63 16 11 C -0.70 -20.49 5.82 22.27 0.13 -20.36 16 12 C -0.02 -0.63 8.92 22.27 0.20 -0.43 16 13 C -0.15 -5.62 9.70 22.27 0.22 -5.41 16 14 C 0.00 -0.07 5.07 -19.87 -0.10 -0.17 16 15 C 0.05 2.47 5.10 29.10 0.15 2.61 16 16 C -0.53 -29.72 9.09 25.60 0.23 -29.48 16 17 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 18 C 0.01 0.58 5.46 84.65 0.46 1.04 16 19 N -0.92 -53.97 13.29 21.45 0.28 -53.68 16 20 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 24 C -0.15 -5.72 9.70 22.26 0.22 -5.51 16 25 C -0.02 -0.58 9.52 22.27 0.21 -0.37 16 26 C -0.17 -2.41 5.69 30.65 0.17 -2.24 16 27 C 0.06 0.76 6.55 86.32 0.57 1.33 16 28 N -0.68 -8.31 6.50 -491.68 -3.20 -11.51 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.43 4.98 8.84 -96.74 -0.85 4.13 16 35 H 0.15 3.88 7.61 -2.91 -0.02 3.86 16 36 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 37 H 0.01 0.76 8.08 -2.39 -0.02 0.74 16 38 H 0.01 0.73 8.09 -2.39 -0.02 0.71 16 39 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 40 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 41 H 0.15 3.96 7.62 -2.91 -0.02 3.94 16 42 H 0.07 1.24 7.69 -2.39 -0.02 1.22 16 43 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 46 H 0.35 3.22 8.79 -89.69 -0.79 2.43 16 Total: -1.00 -69.45 385.80 -3.58 -73.03 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -0.66 Total: 18.39 kcal Atomic # 6 Polarization: -61.52 SS G_CDS: 3.55 Total: -57.98 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -3.84 Total: -84.19 kcal Atomic # 8 Polarization: -57.82 SS G_CDS: -4.34 Total: -62.16 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 67.68 SS G_CDS: -0.32 Total: 67.36 kcal Total: -69.45 -3.58 -73.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886884962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.055 kcal (2) G-P(sol) polarization free energy of solvation -69.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds