Wall clock time and date at job start Sat Apr 11 2020 05:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.49337 * 2 1 4 4 C 1.52788 * 109.58575 * 240.08323 * 2 1 3 5 5 N 1.47078 * 108.76132 * 186.35483 * 4 2 1 6 6 S 1.65602 * 120.87890 * 231.11827 * 5 4 2 7 7 O 1.42095 * 106.40530 * 149.02052 * 6 5 4 8 8 O 1.42103 * 106.40150 * 16.09694 * 6 5 4 9 9 C 1.76201 * 107.21746 * 262.56186 * 6 5 4 10 10 C 1.38236 * 120.00426 * 90.00144 * 9 6 5 11 11 C 1.38230 * 120.00349 * 179.97438 * 10 9 6 12 12 C 1.38237 * 120.00136 * 359.95639 * 11 10 9 13 13 C 1.50695 * 120.00190 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47343 * 89.99986 * 13 12 11 15 15 H 1.07996 * 119.99613 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99938 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99787 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00222 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47097 * 90.00425 * 18 16 14 20 20 H 1.48498 * 109.47273 * 330.00316 * 18 16 14 21 21 H 1.48506 * 109.47228 * 210.00155 * 18 16 14 22 22 C 1.38244 * 119.99570 * 0.27413 * 12 11 10 23 23 C 1.38231 * 119.99816 * 359.51560 * 22 12 11 24 24 C 1.47073 * 118.24216 * 50.85108 * 5 4 2 25 25 H 1.09006 * 109.62685 * 68.79501 * 24 5 4 26 26 C 1.52998 * 109.63279 * 189.17848 * 24 5 4 27 27 C 1.53243 * 108.51965 * 309.08583 * 24 5 4 28 28 N 1.46891 * 109.49650 * 120.05183 * 2 1 3 29 29 H 1.09004 * 109.47125 * 299.94983 * 1 2 3 30 30 H 1.08996 * 109.47480 * 59.94145 * 1 2 3 31 31 H 1.08991 * 109.47105 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.55741 * 66.54197 * 4 2 1 33 33 H 1.09003 * 109.45465 * 306.11019 * 4 2 1 34 34 H 1.08000 * 119.99507 * 359.97285 * 10 9 6 35 35 H 1.08000 * 119.99996 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.47188 * 329.99776 * 13 12 11 37 37 H 1.09001 * 109.46884 * 210.00016 * 13 12 11 38 38 H 0.97007 * 120.00140 * 179.97438 * 17 16 14 39 39 H 1.08002 * 119.99602 * 179.73137 * 22 12 11 40 40 H 1.08000 * 119.99656 * 180.25712 * 23 22 12 41 41 H 1.09004 * 109.46610 * 66.53967 * 26 24 5 42 42 H 1.08997 * 109.47072 * 186.53761 * 26 24 5 43 43 H 1.08996 * 109.46885 * 306.54241 * 26 24 5 44 44 H 1.08999 * 109.49280 * 173.78821 * 27 24 5 45 45 H 1.08993 * 109.49350 * 293.86539 * 27 24 5 46 46 H 1.00903 * 110.99442 * 58.94226 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0422 -0.7179 -1.2477 5 7 3.5047 -0.8424 -1.1549 6 16 4.4798 -0.3579 -2.4027 7 8 5.6957 0.0827 -1.8141 8 8 3.6796 0.4642 -3.2413 9 6 4.8745 -1.7940 -3.3442 10 6 4.0637 -2.1747 -4.3971 11 6 4.3737 -3.3011 -5.1360 12 6 5.4949 -4.0464 -4.8226 13 6 5.8331 -5.2740 -5.6285 14 6 6.7219 -4.8882 -6.7827 15 1 7.0124 -3.8570 -6.9192 16 6 7.1633 -5.8514 -7.6649 17 7 7.9386 -5.5146 -8.6724 18 14 6.6602 -7.6348 -7.4291 19 1 5.3967 -7.8942 -8.1650 20 1 6.4551 -7.9043 -5.9832 21 1 7.7288 -8.5239 -7.9516 22 6 6.3031 -3.6684 -3.7666 23 6 5.9955 -2.5396 -3.0305 24 6 4.0787 -1.4030 0.0777 25 1 3.8293 -2.4618 0.1491 26 6 5.5992 -1.2334 0.0602 27 6 3.4867 -0.6527 1.2755 28 7 2.0202 -0.6934 1.1985 29 1 -0.3633 0.5131 0.8905 30 1 -0.3634 0.5147 -0.8894 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7793 -0.1411 -2.1343 33 1 1.5932 -1.7095 -1.3060 34 1 3.1881 -1.5920 -4.6424 35 1 3.7400 -3.5987 -5.9584 36 1 4.9158 -5.7221 -6.0103 37 1 6.3522 -5.9930 -4.9947 38 1 8.2495 -6.1923 -9.2929 39 1 7.1767 -4.2532 -3.5190 40 1 6.6291 -2.2420 -2.2081 41 1 5.8470 -0.1732 0.1128 42 1 6.0323 -1.7507 0.9162 43 1 6.0012 -1.6552 -0.8609 44 1 3.8157 -1.1265 2.2003 45 1 3.8231 0.3839 1.2577 46 1 1.6828 -1.6438 1.2298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886885282.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:38 Heat of formation + Delta-G solvation = -34.399250 kcal Electronic energy + Delta-G solvation = -27955.327211 eV Core-core repulsion = 24165.104544 eV Total energy + Delta-G solvation = -3790.222667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.59391 -38.94806 -37.54261 -35.86828 -34.61247 -33.72051 -32.94677 -31.78559 -30.73621 -29.67721 -28.01247 -25.76010 -25.19756 -23.52581 -22.48290 -22.26446 -21.26454 -20.75154 -19.02766 -17.85809 -17.19106 -16.94084 -16.52565 -15.79598 -15.37707 -15.31958 -15.15478 -14.82240 -14.49211 -14.31958 -14.25447 -13.86684 -13.55347 -13.37180 -12.85105 -12.81566 -12.66534 -12.53140 -12.29672 -12.15667 -12.04193 -11.93741 -11.83116 -11.72911 -11.59178 -11.46293 -11.23864 -11.00581 -10.91673 -10.68418 -10.54223 -10.25664 -10.12117 -9.73830 -9.56877 -8.73532 -8.68474 -8.57813 -8.41607 -6.21293 -4.23080 0.37170 1.22104 1.68158 2.84852 3.17734 3.26317 3.26920 3.70676 3.80697 3.98533 4.22541 4.27887 4.42790 4.47036 4.58275 4.77219 4.84771 4.95401 5.01161 5.08955 5.13007 5.14611 5.24770 5.29344 5.39904 5.44825 5.50754 5.59328 5.65345 5.65958 5.77213 5.78109 5.83685 5.90329 6.11268 6.18063 6.28275 6.32869 6.43250 6.60064 6.65817 6.66908 6.77574 6.99545 7.24654 7.25930 7.50401 8.31597 8.82148 9.36786 10.91214 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020725 B = 0.002841 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.674672 B = 9853.103599 C = 9981.264419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.072 3.928 3 H 0.086 0.914 4 C 0.082 3.918 5 N -0.997 5.997 6 S 2.693 3.307 7 O -0.957 6.957 8 O -0.965 6.965 9 C -0.700 4.700 10 C -0.022 4.022 11 C -0.142 4.142 12 C 0.031 3.969 13 C 0.006 3.994 14 C -0.521 4.521 15 H 0.075 0.925 16 C 0.073 3.927 17 N -0.894 5.894 18 Si 0.879 3.121 19 H -0.275 1.275 20 H -0.265 1.265 21 H -0.285 1.285 22 C -0.142 4.142 23 C -0.028 4.028 24 C 0.115 3.885 25 H 0.074 0.926 26 C -0.184 4.184 27 C 0.052 3.948 28 N -0.678 5.678 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.029 0.971 37 H 0.034 0.966 38 H 0.267 0.733 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.042 7.778 20.836 25.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.039 4.039 3 H 0.104 0.896 4 C -0.045 4.045 5 N -0.835 5.835 6 S 2.789 3.211 7 O -0.947 6.947 8 O -0.955 6.955 9 C -0.789 4.789 10 C -0.042 4.042 11 C -0.161 4.161 12 C 0.031 3.969 13 C -0.031 4.031 14 C -0.559 4.559 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.531 5.531 18 Si 0.706 3.294 19 H -0.200 1.200 20 H -0.190 1.190 21 H -0.210 1.210 22 C -0.161 4.161 23 C -0.047 4.047 24 C 0.008 3.992 25 H 0.092 0.908 26 C -0.242 4.242 27 C -0.079 4.079 28 N -0.307 5.307 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.115 0.885 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.106 0.894 45 H 0.099 0.901 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.758 9.125 20.918 26.146 hybrid contribution 0.173 -2.480 -1.169 2.747 sum -12.585 6.645 19.750 24.343 Atomic orbital electron populations 1.21764 0.93331 1.02409 1.02710 1.21819 0.95721 0.98799 0.87605 0.89552 1.22210 0.79144 1.01784 1.01335 1.57919 1.16168 1.80204 1.29252 1.01836 0.73044 0.74066 0.72152 1.93650 1.44919 1.80338 1.75803 1.93522 1.70070 1.65094 1.66852 1.30449 1.07917 1.24819 1.15755 1.20750 0.96747 0.94782 0.91911 1.21224 0.98699 0.95789 1.00418 1.20702 0.90297 0.95408 0.90533 1.18983 0.97727 0.90895 0.95471 1.20814 1.29819 0.96913 1.08304 0.90672 1.24985 0.94405 0.98967 0.94659 1.69890 1.34091 1.34294 1.14873 0.86787 0.78638 0.84929 0.79045 1.20020 1.18954 1.21029 1.21225 1.00514 0.97674 0.96679 1.20892 0.93341 0.92868 0.97592 1.21823 0.94693 0.97775 0.84940 0.90773 1.22793 0.92205 1.05849 1.03399 1.22449 0.87286 1.01576 0.96618 1.60723 1.09210 1.21648 1.39120 0.91374 0.91606 0.92424 0.88011 0.91262 0.85278 0.85218 0.95248 0.94802 0.92338 0.85211 0.84805 0.88535 0.91250 0.90952 0.89351 0.90125 0.84113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.49 37.16 0.35 -0.50 16 2 C 0.07 0.55 3.15 -67.83 -0.21 0.34 16 3 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 4 C 0.08 0.72 5.92 -3.84 -0.02 0.70 16 5 N -1.00 -10.41 3.34 -106.45 -0.36 -10.77 16 6 S 2.69 37.48 5.30 -107.50 -0.57 36.91 16 7 O -0.96 -14.53 12.55 -57.17 -0.72 -15.25 16 8 O -0.96 -15.57 15.74 -57.17 -0.90 -16.47 16 9 C -0.70 -10.96 5.97 -39.58 -0.24 -11.19 16 10 C -0.02 -0.36 9.52 -39.58 -0.38 -0.74 16 11 C -0.14 -2.58 9.70 -39.58 -0.38 -2.97 16 12 C 0.03 0.62 5.07 -104.62 -0.53 0.09 16 13 C 0.01 0.14 4.17 -29.04 -0.12 0.02 16 14 C -0.52 -14.31 9.65 -34.44 -0.33 -14.64 16 15 H 0.08 2.28 7.98 -52.49 -0.42 1.87 16 16 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 17 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 18 Si 0.88 20.55 27.47 -169.99 -4.67 15.88 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 20 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C -0.14 -2.56 9.70 -39.58 -0.38 -2.94 16 23 C -0.03 -0.44 8.90 -39.59 -0.35 -0.80 16 24 C 0.12 1.01 3.64 -67.49 -0.25 0.76 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 C -0.18 -1.79 7.56 37.16 0.28 -1.51 16 27 C 0.05 0.39 6.00 -3.70 -0.02 0.37 16 28 N -0.68 -4.93 6.48 -106.71 -0.69 -5.62 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.95 6.79 -51.93 -0.35 0.60 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.13 1.80 7.62 -52.49 -0.40 1.40 16 35 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.03 0.64 7.51 -51.93 -0.39 0.25 16 37 H 0.03 0.75 7.14 -51.93 -0.37 0.38 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 39 H 0.13 2.18 8.06 -52.49 -0.42 1.75 16 40 H 0.13 1.81 5.46 -52.49 -0.29 1.53 16 41 H 0.10 1.06 6.56 -51.93 -0.34 0.72 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.81 3.13 -51.93 -0.16 0.64 16 44 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.34 2.11 8.79 -39.29 -0.35 1.76 16 LS Contribution 368.18 15.07 5.55 5.55 Total: -1.00 -32.71 368.18 -11.15 -43.86 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.88 Total: 2.97 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: -2.69 Total: -31.07 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -0.27 Total: -42.38 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -1.62 Total: -31.72 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Atomic # 16 Polarization: 37.48 SS G_CDS: -0.57 Total: 36.91 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.71 -11.15 -43.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886885282.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.457 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds