Wall clock time and date at job start Sat Apr 11 2020 05:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.57334 * 2 1 4 4 C 1.53117 * 109.52039 * 239.83639 * 2 1 3 5 5 C 1.53032 * 109.27823 * 182.44088 * 4 2 1 6 6 N 1.46851 * 109.52335 * 59.18052 * 5 4 2 7 7 C 1.46852 * 111.19655 * 298.25966 * 6 5 4 8 8 C 1.53033 * 109.52418 * 61.74033 * 7 6 5 9 9 H 1.09003 * 109.53581 * 180.85723 * 8 7 6 10 10 N 1.46506 * 109.50573 * 60.76006 * 8 7 6 11 11 S 1.65602 * 120.00021 * 95.19233 * 10 8 7 12 12 O 1.42099 * 106.40351 * 311.46837 * 11 10 8 13 13 O 1.42097 * 106.40328 * 178.54114 * 11 10 8 14 14 C 1.76201 * 107.21459 * 65.00571 * 11 10 8 15 15 C 1.38229 * 120.00412 * 90.00016 * 14 11 10 16 16 C 1.38235 * 120.00669 * 180.02562 * 15 14 11 17 17 C 1.38238 * 119.99460 * 359.95211 * 16 15 14 18 18 C 1.50701 * 119.99983 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46789 * 90.00402 * 18 17 16 20 20 H 1.08006 * 120.00159 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00120 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00089 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99938 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99556 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99737 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99730 * 23 21 19 27 27 C 1.38241 * 120.00139 * 0.27882 * 17 16 15 28 28 C 1.38229 * 119.99913 * 359.51565 * 27 17 16 29 29 H 1.09005 * 109.46750 * 299.84610 * 1 2 3 30 30 H 1.09001 * 109.47023 * 59.83742 * 1 2 3 31 31 H 1.08996 * 109.46987 * 179.84640 * 1 2 3 32 32 H 1.09001 * 109.50380 * 302.38632 * 4 2 1 33 33 H 1.09000 * 109.50192 * 62.50058 * 4 2 1 34 34 H 1.08995 * 109.46608 * 179.19744 * 5 4 2 35 35 H 1.09003 * 109.46329 * 299.16877 * 5 4 2 36 36 H 1.00898 * 111.00543 * 174.16263 * 6 5 4 37 37 H 1.08994 * 109.46122 * 301.72012 * 7 6 5 38 38 H 1.09004 * 109.46018 * 181.75655 * 7 6 5 39 39 H 0.97004 * 119.99790 * 275.20108 * 10 8 7 40 40 H 1.08001 * 119.99747 * 359.97438 * 15 14 11 41 41 H 1.07998 * 120.00146 * 179.97438 * 16 15 14 42 42 H 1.09003 * 109.46938 * 330.00809 * 18 17 16 43 43 H 1.08996 * 109.47532 * 210.00230 * 18 17 16 44 44 H 0.96998 * 119.99255 * 0.02562 * 22 21 19 45 45 H 1.07997 * 119.99769 * 179.72317 * 27 17 16 46 46 H 1.08002 * 120.00284 * 180.25455 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7251 -1.2477 5 6 3.5708 -0.7753 -1.2116 6 7 4.0102 -1.4790 0.0001 7 6 3.5708 -0.7751 1.2117 8 6 2.0417 -0.7250 1.2479 9 1 1.7156 -0.1893 2.1394 10 7 1.5080 -2.0891 1.2743 11 16 1.1198 -2.7984 2.7195 12 8 2.2325 -2.5930 3.5791 13 8 0.6046 -4.0859 2.4090 14 6 -0.2172 -1.8806 3.4084 15 6 -1.5213 -2.2355 3.1183 16 6 -2.5703 -1.5151 3.6583 17 6 -2.3150 -0.4403 4.4894 18 6 -3.4585 0.3455 5.0777 19 6 -3.8558 -0.2591 6.3997 20 1 -3.3323 -1.1255 6.7763 21 6 -4.8875 0.2936 7.1283 22 7 -5.5246 1.3489 6.6700 23 14 -5.3795 -0.4555 8.7673 24 1 -6.4213 -1.4904 8.5458 25 1 -5.9175 0.6062 9.6553 26 1 -4.1910 -1.0779 9.4038 27 6 -1.0108 -0.0824 4.7757 28 6 0.0380 -0.8054 4.2391 29 1 -0.3633 0.5115 0.8914 30 1 -0.3633 0.5164 -0.8885 31 1 -0.3633 -1.0276 -0.0028 32 1 1.6446 -1.7401 -1.2673 33 1 1.7161 -0.1892 -2.1393 34 1 3.9378 -1.3035 -2.0916 35 1 3.9674 0.2400 -1.2060 36 1 5.0108 -1.6088 0.0002 37 1 3.9675 0.2400 1.2060 38 1 3.9378 -1.3033 2.0918 39 1 1.3821 -2.5768 0.4453 40 1 -1.7207 -3.0751 2.4690 41 1 -3.5891 -1.7921 3.4313 42 1 -4.3079 0.3172 4.3952 43 1 -3.1487 1.3795 5.2296 44 1 -5.2688 1.7380 5.8191 45 1 -0.8114 0.7601 5.4214 46 1 1.0569 -0.5283 4.4660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886885325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:46 Heat of formation + Delta-G solvation = -69.979137 kcal Electronic energy + Delta-G solvation = -27913.335673 eV Core-core repulsion = 24121.570146 eV Total energy + Delta-G solvation = -3791.765527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.66092 -38.88024 -37.07703 -35.71325 -34.58738 -34.00219 -33.05097 -31.52051 -30.65205 -29.85441 -27.33643 -27.09503 -23.56672 -23.28179 -22.43415 -22.37757 -21.15035 -20.10175 -19.24575 -17.97806 -17.42161 -16.91109 -16.52898 -16.24950 -15.33074 -15.00886 -14.72599 -14.63713 -14.36311 -14.31737 -14.04628 -13.78022 -13.62105 -13.26541 -13.18819 -12.93435 -12.60296 -12.30368 -12.25688 -12.10568 -11.97863 -11.88413 -11.78966 -11.73818 -11.63879 -11.10208 -10.99459 -10.86782 -10.78734 -10.57594 -10.52682 -10.23392 -10.04804 -9.57189 -9.26101 -8.71879 -8.65370 -8.50009 -8.30386 -6.52409 -4.25079 0.54373 1.27265 1.72103 3.10897 3.37537 3.40461 3.56696 3.78532 3.89744 4.07649 4.31813 4.43034 4.45234 4.49771 4.55891 4.85455 4.97397 5.04250 5.12729 5.17837 5.19668 5.24669 5.25748 5.30093 5.42789 5.54899 5.59438 5.60547 5.69112 5.75547 5.76992 5.82313 5.87266 6.04218 6.15036 6.16718 6.24658 6.43957 6.70845 6.73085 6.74537 6.96207 6.97157 7.04405 7.31076 7.37024 7.92373 8.28404 8.68600 9.46047 10.87122 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020620 B = 0.002900 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.563691 B = 9652.078099 C =10223.860966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 H 0.079 0.921 4 C -0.113 4.113 5 C 0.055 3.945 6 N -0.684 5.684 7 C 0.038 3.962 8 C 0.165 3.835 9 H 0.089 0.911 10 N -1.098 6.098 11 S 2.698 3.302 12 O -0.965 6.965 13 O -0.968 6.968 14 C -0.702 4.702 15 C -0.019 4.019 16 C -0.145 4.145 17 C 0.031 3.969 18 C 0.027 3.973 19 C -0.597 4.597 20 H 0.053 0.947 21 C 0.020 3.980 22 N -0.907 5.907 23 Si 1.073 2.927 24 H -0.286 1.286 25 H -0.282 1.282 26 H -0.287 1.287 27 C -0.145 4.145 28 C -0.025 4.025 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.029 0.971 36 H 0.344 0.656 37 H 0.040 0.960 38 H 0.092 0.908 39 H 0.418 0.582 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.269 0.731 45 H 0.127 0.873 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.521 -1.986 -17.035 24.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 H 0.097 0.903 4 C -0.151 4.151 5 C -0.074 4.074 6 N -0.316 5.316 7 C -0.093 4.093 8 C 0.056 3.944 9 H 0.107 0.893 10 N -0.857 5.857 11 S 2.790 3.210 12 O -0.955 6.955 13 O -0.958 6.958 14 C -0.791 4.791 15 C -0.039 4.039 16 C -0.164 4.164 17 C 0.030 3.970 18 C -0.010 4.010 19 C -0.635 4.635 20 H 0.071 0.929 21 C -0.184 4.184 22 N -0.543 5.543 23 Si 0.901 3.099 24 H -0.212 1.212 25 H -0.208 1.208 26 H -0.213 1.213 27 C -0.164 4.164 28 C -0.045 4.045 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.047 0.953 36 H 0.162 0.838 37 H 0.058 0.942 38 H 0.110 0.890 39 H 0.254 0.746 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.080 0.920 45 H 0.145 0.855 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 16.377 -2.893 -15.235 22.554 hybrid contribution 1.016 0.988 -1.539 2.093 sum 17.394 -1.904 -16.774 24.239 Atomic orbital electron populations 1.21821 0.94077 1.02606 1.02129 1.21437 0.96714 0.99187 0.94402 0.90295 1.21653 0.94782 1.01351 0.97359 1.21953 0.95980 0.96400 0.93062 1.60156 1.18655 1.51319 1.01441 1.22509 0.95587 0.97213 0.94013 1.20780 0.92442 0.82012 0.99128 0.89268 1.55408 1.79972 1.25244 1.25112 1.01600 0.73815 0.73025 0.72601 1.93547 1.50322 1.86072 1.65522 1.93560 1.81049 1.37198 1.84002 1.30436 1.14628 1.15944 1.18068 1.20749 0.90970 0.96499 0.95646 1.21206 0.99115 0.96631 0.99429 1.20841 0.95869 0.92274 0.87993 1.18646 0.90802 0.94868 0.96666 1.21863 1.20734 1.16647 1.04239 0.92864 1.25916 0.93286 0.95335 1.03910 1.70776 1.41128 1.20778 1.21611 0.83474 0.76027 0.75692 0.74728 1.21234 1.20801 1.21288 1.21198 0.92278 1.01455 1.01459 1.20768 0.99426 0.91720 0.92552 0.92121 0.92570 0.92064 0.90947 0.91305 0.90818 0.95272 0.83822 0.94217 0.88984 0.74647 0.85236 0.85513 0.95711 0.95713 0.92011 0.85529 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.02 37.16 0.34 -0.94 16 2 C -0.10 -0.74 2.61 -90.49 -0.24 -0.98 16 3 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.11 -0.76 5.18 -26.65 -0.14 -0.90 16 5 C 0.06 0.35 6.55 -3.83 -0.03 0.33 16 6 N -0.68 -5.17 6.70 -113.82 -0.76 -5.93 16 7 C 0.04 0.32 6.20 -3.83 -0.02 0.30 16 8 C 0.16 1.49 2.48 -67.85 -0.17 1.32 16 9 H 0.09 0.82 7.23 -51.93 -0.38 0.44 16 10 N -1.10 -11.16 4.43 -4.82 -0.02 -11.18 16 11 S 2.70 37.37 5.65 -107.50 -0.61 36.76 16 12 O -0.96 -15.29 16.56 -57.17 -0.95 -16.24 16 13 O -0.97 -15.96 17.28 -57.17 -0.99 -16.95 16 14 C -0.70 -10.82 5.82 -39.58 -0.23 -11.05 16 15 C -0.02 -0.31 9.52 -39.59 -0.38 -0.69 16 16 C -0.14 -2.68 9.70 -39.58 -0.38 -3.07 16 17 C 0.03 0.63 5.07 -104.62 -0.53 0.10 16 18 C 0.03 0.65 4.42 -29.03 -0.13 0.52 16 19 C -0.60 -16.40 9.09 -34.44 -0.31 -16.71 16 20 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 21 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 22 N -0.91 -26.70 13.65 55.43 0.76 -25.94 16 23 Si 1.07 24.83 29.90 -169.99 -5.08 19.75 16 24 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 27 C -0.14 -2.65 9.70 -39.58 -0.38 -3.04 16 28 C -0.03 -0.40 8.90 -39.58 -0.35 -0.75 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.54 7.54 -51.93 -0.39 0.15 16 32 H 0.07 0.52 6.67 -51.93 -0.35 0.17 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 36 H 0.34 2.13 8.90 -39.29 -0.35 1.78 16 37 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.91 7.65 -51.93 -0.40 0.51 16 39 H 0.42 3.74 7.17 -34.48 -0.25 3.50 16 40 H 0.13 1.83 7.62 -52.49 -0.40 1.43 16 41 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 42 H 0.02 0.62 7.95 -51.93 -0.41 0.20 16 43 H 0.02 0.61 7.95 -51.93 -0.41 0.20 16 44 H 0.27 7.81 7.22 -40.82 -0.29 7.51 16 45 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 46 H 0.13 1.73 7.62 -52.49 -0.40 1.33 16 LS Contribution 379.60 15.07 5.72 5.72 Total: -1.00 -33.31 379.60 -12.02 -45.33 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.03 Total: 3.79 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: -3.05 Total: -35.11 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: -0.03 Total: -43.05 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -1.93 Total: -33.19 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.08 Total: 19.75 kcal Atomic # 16 Polarization: 37.37 SS G_CDS: -0.61 Total: 36.76 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.31 -12.02 -45.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886885325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.650 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds