Wall clock time and date at job start Sat Apr 11 2020 05:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.57334 * 2 1 4 4 C 1.53117 * 109.52039 * 239.83639 * 2 1 3 5 5 C 1.53032 * 109.27823 * 182.44088 * 4 2 1 6 6 N 1.46851 * 109.52335 * 59.18052 * 5 4 2 7 7 C 1.46852 * 111.19655 * 298.25966 * 6 5 4 8 8 C 1.53033 * 109.52418 * 61.74033 * 7 6 5 9 9 H 1.09003 * 109.53581 * 180.85723 * 8 7 6 10 10 N 1.46506 * 109.50573 * 60.76006 * 8 7 6 11 11 S 1.65602 * 120.00021 * 95.19233 * 10 8 7 12 12 O 1.42099 * 106.40351 * 311.46837 * 11 10 8 13 13 O 1.42097 * 106.40328 * 178.54114 * 11 10 8 14 14 C 1.76201 * 107.21459 * 65.00571 * 11 10 8 15 15 C 1.38229 * 120.00412 * 90.00016 * 14 11 10 16 16 C 1.38235 * 120.00669 * 180.02562 * 15 14 11 17 17 C 1.38238 * 119.99460 * 359.95211 * 16 15 14 18 18 C 1.50701 * 119.99983 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46789 * 90.00402 * 18 17 16 20 20 H 1.08006 * 120.00159 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00120 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00089 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99938 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99556 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99737 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99730 * 23 21 19 27 27 C 1.38241 * 120.00139 * 0.27882 * 17 16 15 28 28 C 1.38229 * 119.99913 * 359.51565 * 27 17 16 29 29 H 1.09005 * 109.46750 * 299.84610 * 1 2 3 30 30 H 1.09001 * 109.47023 * 59.83742 * 1 2 3 31 31 H 1.08996 * 109.46987 * 179.84640 * 1 2 3 32 32 H 1.09001 * 109.50380 * 302.38632 * 4 2 1 33 33 H 1.09000 * 109.50192 * 62.50058 * 4 2 1 34 34 H 1.08995 * 109.46608 * 179.19744 * 5 4 2 35 35 H 1.09003 * 109.46329 * 299.16877 * 5 4 2 36 36 H 1.00898 * 111.00543 * 174.16263 * 6 5 4 37 37 H 1.08994 * 109.46122 * 301.72012 * 7 6 5 38 38 H 1.09004 * 109.46018 * 181.75655 * 7 6 5 39 39 H 0.97004 * 119.99790 * 275.20108 * 10 8 7 40 40 H 1.08001 * 119.99747 * 359.97438 * 15 14 11 41 41 H 1.07998 * 120.00146 * 179.97438 * 16 15 14 42 42 H 1.09003 * 109.46938 * 330.00809 * 18 17 16 43 43 H 1.08996 * 109.47532 * 210.00230 * 18 17 16 44 44 H 0.96998 * 119.99255 * 0.02562 * 22 21 19 45 45 H 1.07997 * 119.99769 * 179.72317 * 27 17 16 46 46 H 1.08002 * 120.00284 * 180.25455 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7251 -1.2477 5 6 3.5708 -0.7753 -1.2116 6 7 4.0102 -1.4790 0.0001 7 6 3.5708 -0.7751 1.2117 8 6 2.0417 -0.7250 1.2479 9 1 1.7156 -0.1893 2.1394 10 7 1.5080 -2.0891 1.2743 11 16 1.1198 -2.7984 2.7195 12 8 2.2325 -2.5930 3.5791 13 8 0.6046 -4.0859 2.4090 14 6 -0.2172 -1.8806 3.4084 15 6 -1.5213 -2.2355 3.1183 16 6 -2.5703 -1.5151 3.6583 17 6 -2.3150 -0.4403 4.4894 18 6 -3.4585 0.3455 5.0777 19 6 -3.8558 -0.2591 6.3997 20 1 -3.3323 -1.1255 6.7763 21 6 -4.8875 0.2936 7.1283 22 7 -5.5246 1.3489 6.6700 23 14 -5.3795 -0.4555 8.7673 24 1 -6.4213 -1.4904 8.5458 25 1 -5.9175 0.6062 9.6553 26 1 -4.1910 -1.0779 9.4038 27 6 -1.0108 -0.0824 4.7757 28 6 0.0380 -0.8054 4.2391 29 1 -0.3633 0.5115 0.8914 30 1 -0.3633 0.5164 -0.8885 31 1 -0.3633 -1.0276 -0.0028 32 1 1.6446 -1.7401 -1.2673 33 1 1.7161 -0.1892 -2.1393 34 1 3.9378 -1.3035 -2.0916 35 1 3.9674 0.2400 -1.2060 36 1 5.0108 -1.6088 0.0002 37 1 3.9675 0.2400 1.2060 38 1 3.9378 -1.3033 2.0918 39 1 1.3821 -2.5768 0.4453 40 1 -1.7207 -3.0751 2.4690 41 1 -3.5891 -1.7921 3.4313 42 1 -4.3079 0.3172 4.3952 43 1 -3.1487 1.3795 5.2296 44 1 -5.2688 1.7380 5.8191 45 1 -0.8114 0.7601 5.4214 46 1 1.0569 -0.5283 4.4660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886885325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:45 Heat of formation + Delta-G solvation = -93.451472 kcal Electronic energy + Delta-G solvation = -27914.353510 eV Core-core repulsion = 24121.570146 eV Total energy + Delta-G solvation = -3792.783364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.39358 -40.22618 -38.30142 -36.94653 -35.97594 -35.25182 -33.73279 -33.25175 -32.03599 -30.51716 -28.90891 -27.98895 -25.51746 -23.97831 -23.71969 -22.99912 -22.72478 -20.95847 -20.17468 -19.14485 -18.99596 -18.47114 -17.20514 -17.18609 -16.57952 -16.44999 -15.71777 -15.68729 -15.52682 -15.38669 -15.12399 -15.06890 -14.91804 -14.53247 -14.35560 -13.86357 -13.58660 -13.55160 -13.52318 -13.34372 -13.19701 -13.11369 -12.98872 -12.79941 -12.57521 -12.50012 -12.46644 -12.12021 -11.98393 -11.77846 -11.68315 -11.45231 -11.16702 -11.11298 -10.63671 -10.42126 -10.02617 -9.96754 -9.26895 -8.74995 -6.48979 -0.61330 -0.12172 0.32769 1.50007 1.57579 1.76389 2.03733 2.45333 2.56582 2.80500 3.07411 3.30545 3.38518 3.65768 3.80732 3.84629 3.90784 3.94466 4.02261 4.21851 4.33472 4.38738 4.39755 4.50921 4.59318 4.66667 4.70139 4.72157 4.77583 4.82965 4.90449 4.95924 5.01695 5.03868 5.07336 5.09961 5.16295 5.23566 5.28627 5.37095 5.52374 5.72679 5.78164 5.90202 6.07426 6.13356 6.20036 6.47355 6.55727 7.30185 8.64351 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020620 B = 0.002900 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.563691 B = 9652.078099 C =10223.860966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 H 0.089 0.911 4 C -0.113 4.113 5 C 0.056 3.944 6 N -0.693 5.693 7 C 0.039 3.961 8 C 0.155 3.845 9 H 0.088 0.912 10 N -1.082 6.082 11 S 2.723 3.277 12 O -0.980 6.980 13 O -0.990 6.990 14 C -0.696 4.696 15 C -0.015 4.015 16 C -0.154 4.154 17 C 0.000 4.000 18 C 0.033 3.967 19 C -0.608 4.608 20 H 0.044 0.956 21 C -0.029 4.029 22 N -0.931 5.931 23 Si 1.117 2.883 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.273 1.273 27 C -0.153 4.153 28 C -0.017 4.017 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.036 0.964 36 H 0.352 0.648 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.426 0.574 40 H 0.153 0.847 41 H 0.126 0.874 42 H 0.009 0.991 43 H 0.010 0.990 44 H 0.259 0.741 45 H 0.128 0.872 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.399 -2.813 -18.092 26.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 H 0.108 0.892 4 C -0.151 4.151 5 C -0.073 4.073 6 N -0.326 5.326 7 C -0.092 4.092 8 C 0.047 3.953 9 H 0.106 0.894 10 N -0.845 5.845 11 S 2.812 3.188 12 O -0.970 6.970 13 O -0.980 6.980 14 C -0.783 4.783 15 C -0.035 4.035 16 C -0.173 4.173 17 C 0.000 4.000 18 C -0.004 4.004 19 C -0.646 4.646 20 H 0.063 0.937 21 C -0.228 4.228 22 N -0.568 5.568 23 Si 0.938 3.062 24 H -0.197 1.197 25 H -0.204 1.204 26 H -0.198 1.198 27 C -0.172 4.172 28 C -0.036 4.036 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.054 0.946 36 H 0.171 0.829 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.264 0.736 40 H 0.171 0.829 41 H 0.144 0.856 42 H 0.027 0.973 43 H 0.028 0.972 44 H 0.069 0.931 45 H 0.146 0.854 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 18.254 -3.717 -16.309 24.760 hybrid contribution 0.555 1.239 -1.346 1.912 sum 18.810 -2.478 -17.656 25.916 Atomic orbital electron populations 1.21833 0.94927 1.02251 1.01783 1.21403 0.95852 0.99707 0.94150 0.89227 1.21668 0.95091 1.01102 0.97244 1.21982 0.95614 0.96831 0.92831 1.60148 1.19417 1.51522 1.01488 1.22428 0.94847 0.97928 0.93995 1.21026 0.93126 0.81117 0.99991 0.89380 1.55083 1.79347 1.25938 1.24113 1.00869 0.72855 0.72213 0.72830 1.93532 1.50444 1.86205 1.66777 1.93529 1.81354 1.38703 1.84462 1.30859 1.15124 1.15218 1.17061 1.20972 0.90621 0.96568 0.95290 1.21245 0.99967 0.96538 0.99572 1.20582 0.95526 0.93595 0.90337 1.18422 0.91873 0.94579 0.95511 1.22179 1.20531 1.16258 1.05619 0.93718 1.27343 0.93342 0.95084 1.06994 1.70890 1.42209 1.22082 1.21622 0.82920 0.76619 0.75486 0.71140 1.19689 1.20379 1.19830 1.21258 0.92035 1.02038 1.01883 1.21023 1.00017 0.91074 0.91531 0.93775 0.91667 0.92420 0.91369 0.90077 0.89819 0.94614 0.82942 0.92806 0.90479 0.73561 0.82904 0.85609 0.97311 0.97176 0.93135 0.85401 0.82517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.02 71.98 0.65 -1.69 16 2 C -0.09 -1.17 2.61 -10.71 -0.03 -1.20 16 3 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.11 -1.19 5.18 30.64 0.16 -1.04 16 5 C 0.06 0.55 6.55 86.32 0.57 1.12 16 6 N -0.69 -8.71 6.70 -514.01 -3.44 -12.15 16 7 C 0.04 0.57 6.20 86.32 0.54 1.11 16 8 C 0.16 2.46 2.48 45.04 0.11 2.57 16 9 H 0.09 1.42 7.23 -2.39 -0.02 1.41 16 10 N -1.08 -19.70 4.43 -169.16 -0.75 -20.45 16 11 S 2.72 70.10 5.65 -56.49 -0.32 69.78 16 12 O -0.98 -29.05 16.56 -128.00 -2.12 -31.17 16 13 O -0.99 -30.71 17.28 -128.00 -2.21 -32.92 16 14 C -0.70 -20.39 5.82 22.27 0.13 -20.26 16 15 C -0.02 -0.48 9.52 22.27 0.21 -0.27 16 16 C -0.15 -5.77 9.70 22.27 0.22 -5.55 16 17 C 0.00 0.00 5.07 -19.86 -0.10 -0.10 16 18 C 0.03 1.68 4.42 29.10 0.13 1.80 16 19 C -0.61 -34.30 9.09 25.60 0.23 -34.07 16 20 H 0.04 2.54 7.74 -2.91 -0.02 2.52 16 21 C -0.03 -1.66 5.46 84.65 0.46 -1.20 16 22 N -0.93 -56.19 13.65 21.45 0.29 -55.90 16 23 Si 1.12 50.00 29.90 68.60 2.05 52.06 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 C -0.15 -5.62 9.70 22.27 0.22 -5.41 16 28 C -0.02 -0.53 8.90 22.27 0.20 -0.33 16 29 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.92 7.54 -2.39 -0.02 0.90 16 32 H 0.07 0.79 6.67 -2.39 -0.02 0.77 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.04 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.35 3.50 8.90 -89.70 -0.80 2.71 16 37 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.08 1.38 7.65 -2.38 -0.02 1.36 16 39 H 0.43 6.64 7.17 -96.74 -0.69 5.95 16 40 H 0.15 4.03 7.62 -2.91 -0.02 4.01 16 41 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 42 H 0.01 0.46 7.95 -2.39 -0.02 0.44 16 43 H 0.01 0.53 7.95 -2.39 -0.02 0.51 16 44 H 0.26 15.66 7.22 -92.71 -0.67 14.99 16 45 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 46 H 0.16 3.85 7.62 -2.91 -0.02 3.83 16 Total: -1.00 -71.73 379.60 -3.21 -74.94 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -0.40 Total: 20.33 kcal Atomic # 6 Polarization: -68.20 SS G_CDS: 3.69 Total: -64.51 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -3.90 Total: -88.50 kcal Atomic # 8 Polarization: -59.76 SS G_CDS: -4.33 Total: -64.10 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 2.05 Total: 52.06 kcal Atomic # 16 Polarization: 70.10 SS G_CDS: -0.32 Total: 69.78 kcal Total: -71.73 -3.21 -74.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886885325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.515 kcal (2) G-P(sol) polarization free energy of solvation -71.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds