Wall clock time and date at job start Sat Apr 11 2020 05:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.57429 * 2 1 4 4 C 1.53121 * 109.52225 * 239.84451 * 2 1 3 5 5 C 1.53037 * 109.27741 * 182.44029 * 4 2 1 6 6 N 1.46846 * 109.51981 * 59.17884 * 5 4 2 7 7 C 1.46840 * 111.20012 * 298.25501 * 6 5 4 8 8 C 1.53033 * 109.52240 * 61.74582 * 7 6 5 9 9 H 1.08999 * 109.50405 * 60.80308 * 8 7 6 10 10 N 1.46500 * 109.50440 * 180.88163 * 8 7 6 11 11 S 1.65606 * 120.00055 * 265.00188 * 10 8 7 12 12 O 1.42105 * 106.40008 * 311.45637 * 11 10 8 13 13 O 1.42098 * 106.40370 * 178.53822 * 11 10 8 14 14 C 1.76193 * 107.21910 * 64.99793 * 11 10 8 15 15 C 1.38241 * 119.99935 * 269.73003 * 14 11 10 16 16 C 1.38234 * 119.99662 * 179.76824 * 15 14 11 17 17 C 1.38232 * 120.00538 * 0.50245 * 16 15 14 18 18 C 1.50696 * 120.00136 * 179.72614 * 17 16 15 19 19 C 1.50699 * 109.47258 * 270.02133 * 18 17 16 20 20 H 1.08000 * 119.99933 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00157 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00165 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00078 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46941 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46754 * 119.99923 * 23 21 19 26 26 H 1.48500 * 109.47205 * 240.00258 * 23 21 19 27 27 C 1.38234 * 119.99602 * 359.75045 * 17 16 15 28 28 C 1.38232 * 120.00400 * 90.00069 * 14 11 10 29 29 H 1.08992 * 109.46818 * 299.84254 * 1 2 3 30 30 H 1.09000 * 109.47014 * 59.83932 * 1 2 3 31 31 H 1.08996 * 109.46739 * 179.83774 * 1 2 3 32 32 H 1.08997 * 109.50360 * 62.49585 * 4 2 1 33 33 H 1.09009 * 109.53327 * 302.39961 * 4 2 1 34 34 H 1.08997 * 109.46460 * 299.16388 * 5 4 2 35 35 H 1.08998 * 109.46294 * 179.18901 * 5 4 2 36 36 H 1.00901 * 111.00178 * 62.35804 * 6 5 4 37 37 H 1.09002 * 109.46422 * 301.72764 * 7 6 5 38 38 H 1.09000 * 109.45857 * 181.75444 * 7 6 5 39 39 H 0.97002 * 120.00335 * 85.00228 * 10 8 7 40 40 H 1.08001 * 120.00131 * 359.97438 * 15 14 11 41 41 H 1.08005 * 119.99575 * 180.22739 * 16 15 14 42 42 H 1.08993 * 109.47232 * 30.02477 * 18 17 16 43 43 H 1.09006 * 109.47132 * 150.02532 * 18 17 16 44 44 H 0.96998 * 120.00455 * 180.02562 * 22 21 19 45 45 H 1.08000 * 120.00363 * 179.97438 * 27 17 16 46 46 H 1.07999 * 119.99964 * 0.02562 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0418 -0.7250 -1.2479 5 6 3.5709 -0.7751 -1.2117 6 7 4.0102 -1.4789 -0.0001 7 6 3.5708 -0.7752 1.2115 8 6 2.0418 -0.7251 1.2477 9 1 1.6447 -1.7400 1.2681 10 7 1.6042 -0.0047 2.4459 11 16 1.2147 -0.8428 3.8201 12 8 0.3392 -1.8876 3.4182 13 8 0.8684 0.1283 4.7979 14 6 2.6884 -1.6210 4.3918 15 6 3.0103 -2.8940 3.9596 16 6 4.1690 -3.5025 4.4045 17 6 5.0006 -2.8423 5.2896 18 6 6.2607 -3.5083 5.7793 19 6 5.9617 -4.2883 7.0336 20 1 4.9596 -4.3002 7.4361 21 6 6.9678 -4.9859 7.6678 22 7 8.1884 -4.9701 7.1785 23 14 6.5971 -5.9533 9.2222 24 1 5.1589 -5.8099 9.5633 25 1 6.9130 -7.3872 8.9999 26 1 7.4246 -5.4314 10.3393 27 6 4.6761 -1.5714 5.7258 28 6 3.5200 -0.9607 5.2769 29 1 -0.3633 0.5114 0.8913 30 1 -0.3633 0.5163 -0.8885 31 1 -0.3633 -1.0276 -0.0029 32 1 1.7162 -0.1890 -2.1393 33 1 1.6447 -1.7400 -1.2682 34 1 3.9675 0.2401 -1.2060 35 1 3.9379 -1.3033 -2.0917 36 1 3.6876 -2.4349 -0.0001 37 1 3.9675 0.2400 1.2059 38 1 3.9377 -1.3036 2.0915 39 1 1.5426 0.9633 2.4345 40 1 2.3582 -3.4118 3.2718 41 1 4.4224 -4.4957 4.0639 42 1 6.6361 -4.1847 5.0115 43 1 7.0129 -2.7492 5.9941 44 1 8.8961 -5.4612 7.6245 45 1 5.3255 -1.0557 6.4176 46 1 3.2662 0.0319 5.6183 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886885326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:48 Heat of formation + Delta-G solvation = -69.649312 kcal Electronic energy + Delta-G solvation = -27818.696162 eV Core-core repulsion = 24026.944938 eV Total energy + Delta-G solvation = -3791.751224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.71749 -38.81628 -37.15619 -35.80337 -34.90765 -33.70762 -33.20809 -31.56618 -30.59995 -29.52757 -27.45482 -27.10009 -23.74118 -23.03465 -22.53052 -22.35188 -20.97439 -20.79226 -19.39111 -17.88035 -17.33155 -16.62787 -16.44299 -16.04302 -15.31961 -15.12717 -14.95051 -14.92361 -14.44629 -14.37561 -14.20470 -13.80643 -13.33233 -13.13567 -13.04876 -12.89134 -12.46537 -12.26542 -12.16350 -12.06993 -11.99934 -11.92547 -11.73056 -11.70612 -11.50270 -11.49121 -10.98498 -10.95799 -10.93504 -10.67107 -10.56633 -10.49707 -10.10876 -9.72931 -9.61936 -8.60415 -8.54423 -8.51716 -8.38318 -6.17240 -4.22243 0.46752 1.30564 1.78113 2.99474 3.23082 3.31197 3.36338 3.72820 4.02660 4.11727 4.19991 4.36530 4.38846 4.42526 4.62032 4.72441 4.89978 5.05201 5.06697 5.15333 5.21023 5.21167 5.28938 5.33247 5.40818 5.47982 5.59115 5.64677 5.71345 5.71533 5.79703 5.83894 5.90136 5.92076 6.06278 6.23189 6.31170 6.49109 6.70831 6.80548 6.82966 6.90548 7.11701 7.29071 7.42516 7.59031 7.77992 8.13075 8.82862 9.42848 10.92786 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016779 B = 0.003081 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.310758 B = 9085.599205 C =10143.255089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 H 0.078 0.922 4 C -0.152 4.152 5 C 0.053 3.947 6 N -0.678 5.678 7 C 0.035 3.965 8 C 0.120 3.880 9 H 0.091 0.909 10 N -1.111 6.111 11 S 2.695 3.305 12 O -0.965 6.965 13 O -0.967 6.967 14 C -0.704 4.704 15 C -0.025 4.025 16 C -0.143 4.143 17 C 0.029 3.971 18 C 0.039 3.961 19 C -0.517 4.517 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.891 5.891 23 Si 0.898 3.102 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.145 4.145 28 C -0.021 4.021 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.344 0.656 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.416 0.584 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.264 0.736 45 H 0.128 0.872 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.746 11.055 -17.351 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 H 0.096 0.904 4 C -0.192 4.192 5 C -0.077 4.077 6 N -0.306 5.306 7 C -0.097 4.097 8 C 0.011 3.989 9 H 0.109 0.891 10 N -0.869 5.869 11 S 2.788 3.212 12 O -0.955 6.955 13 O -0.957 6.957 14 C -0.794 4.794 15 C -0.044 4.044 16 C -0.161 4.161 17 C 0.029 3.971 18 C 0.002 3.998 19 C -0.555 4.555 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.529 5.529 23 Si 0.725 3.275 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.163 4.163 28 C -0.040 4.040 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.162 0.838 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.250 0.750 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.146 0.854 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.759 11.031 -16.936 23.383 hybrid contribution -0.337 -0.552 0.957 1.155 sum -12.095 10.479 -15.979 22.615 Atomic orbital electron populations 1.21836 0.94494 1.02487 1.01810 1.21403 0.96434 0.99908 0.93562 0.90390 1.22395 0.97898 1.01239 0.97699 1.22098 0.92325 1.00068 0.93201 1.60614 1.62615 1.06021 1.01380 1.22698 0.91949 1.01014 0.94017 1.21738 0.96172 0.96346 0.84651 0.89084 1.55585 1.85589 1.18992 1.26740 1.01615 0.74126 0.73268 0.72161 1.93558 1.62158 1.57385 1.82362 1.93568 1.82822 1.60916 1.58382 1.30271 1.24193 1.08233 1.16669 1.20733 0.95520 0.92061 0.96117 1.21228 0.94818 1.00573 0.99530 1.21111 0.96347 0.91887 0.87782 1.18542 0.88622 0.95826 0.96789 1.21006 0.95764 1.30097 1.08649 0.92257 1.25001 0.94926 0.96438 0.97772 1.69952 1.00836 1.42096 1.40021 0.86436 0.78627 0.79682 0.82745 1.19579 1.20794 1.20810 1.21246 0.97504 0.96106 1.01489 1.20749 0.92446 0.98478 0.92332 0.92305 0.92551 0.92248 0.90932 0.91475 0.90784 0.90425 0.83811 0.90173 0.89221 0.74995 0.85514 0.85358 0.94656 0.94714 0.92678 0.85369 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.07 37.16 0.34 -0.76 16 2 C -0.09 -0.65 2.41 -90.49 -0.22 -0.87 16 3 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.15 -0.94 5.36 -26.65 -0.14 -1.08 16 5 C 0.05 0.36 6.55 -3.83 -0.03 0.34 16 6 N -0.68 -6.00 6.87 -113.83 -0.78 -6.78 16 7 C 0.03 0.33 6.16 -3.84 -0.02 0.30 16 8 C 0.12 1.05 2.36 -67.85 -0.16 0.89 16 9 H 0.09 0.86 7.50 -51.93 -0.39 0.47 16 10 N -1.11 -10.41 4.83 -4.83 -0.02 -10.43 16 11 S 2.70 36.13 5.72 -107.50 -0.61 35.51 16 12 O -0.96 -15.14 16.62 -57.17 -0.95 -16.09 16 13 O -0.97 -15.35 17.28 -57.17 -0.99 -16.34 16 14 C -0.70 -10.60 5.08 -39.58 -0.20 -10.80 16 15 C -0.02 -0.38 8.58 -39.58 -0.34 -0.72 16 16 C -0.14 -2.55 9.70 -39.58 -0.38 -2.94 16 17 C 0.03 0.59 5.07 -104.63 -0.53 0.06 16 18 C 0.04 0.94 5.10 -29.04 -0.15 0.80 16 19 C -0.52 -13.94 9.09 -34.44 -0.31 -14.26 16 20 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 23 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 C -0.14 -2.63 9.70 -39.58 -0.38 -3.01 16 28 C -0.02 -0.33 9.52 -39.58 -0.38 -0.70 16 29 H 0.06 0.46 7.68 -51.93 -0.40 0.06 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.34 2.80 8.86 -39.29 -0.35 2.45 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.01 6.19 -51.93 -0.32 0.68 16 39 H 0.42 2.99 8.84 -34.47 -0.30 2.69 16 40 H 0.13 1.68 7.61 -52.49 -0.40 1.28 16 41 H 0.13 2.19 8.06 -52.48 -0.42 1.77 16 42 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 43 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 44 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 45 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 46 H 0.13 1.77 7.62 -52.49 -0.40 1.37 16 LS Contribution 382.46 15.07 5.76 5.76 Total: -1.00 -32.42 382.46 -12.06 -44.48 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.17 Total: 3.73 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: -3.01 Total: -31.20 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -0.07 Total: -41.91 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -1.94 Total: -32.43 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 36.13 SS G_CDS: -0.61 Total: 35.51 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.42 -12.06 -44.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886885326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.170 kcal (2) G-P(sol) polarization free energy of solvation -32.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds