Wall clock time and date at job start Sat Apr 11 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.57568 * 2 1 4 4 C 1.53119 * 109.52581 * 120.16550 * 2 1 3 5 5 C 1.53029 * 109.28304 * 177.55988 * 4 2 1 6 6 N 1.46850 * 109.52116 * 300.81353 * 5 4 2 7 7 C 1.46850 * 111.19637 * 61.74718 * 6 5 4 8 8 C 1.53042 * 109.51908 * 298.25576 * 7 6 5 9 9 H 1.08997 * 109.50146 * 179.16526 * 8 7 6 10 10 N 1.46499 * 109.50200 * 299.23774 * 8 7 6 11 11 S 1.65596 * 120.00131 * 264.99904 * 10 8 7 12 12 O 1.42095 * 106.40668 * 311.46262 * 11 10 8 13 13 O 1.42103 * 106.40117 * 178.53989 * 11 10 8 14 14 C 1.76204 * 107.21762 * 65.00355 * 11 10 8 15 15 C 1.38235 * 120.00234 * 89.99672 * 14 11 10 16 16 C 1.38233 * 120.00204 * 179.97438 * 15 14 11 17 17 C 1.38231 * 119.99939 * 0.02574 * 16 15 14 18 18 C 1.50696 * 120.00100 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.47259 * 89.99885 * 18 17 16 20 20 H 1.08005 * 119.99758 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00102 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47389 * 300.00068 * 23 21 19 26 26 H 1.48504 * 109.47102 * 60.00417 * 23 21 19 27 27 C 1.38242 * 120.00142 * 0.25275 * 17 16 15 28 28 C 1.38231 * 119.99909 * 269.97890 * 14 11 10 29 29 H 1.09002 * 109.47076 * 180.15247 * 1 2 3 30 30 H 1.08998 * 109.47093 * 300.15722 * 1 2 3 31 31 H 1.08996 * 109.46647 * 60.15757 * 1 2 3 32 32 H 1.09000 * 109.50670 * 57.61236 * 4 2 1 33 33 H 1.09006 * 109.49970 * 297.49991 * 4 2 1 34 34 H 1.09001 * 109.46634 * 180.80070 * 5 4 2 35 35 H 1.09000 * 109.46613 * 60.83135 * 5 4 2 36 36 H 1.00892 * 111.00476 * 297.64604 * 6 5 4 37 37 H 1.09000 * 109.46325 * 178.24211 * 7 6 5 38 38 H 1.08994 * 109.46428 * 58.26916 * 7 6 5 39 39 H 0.96998 * 119.99828 * 85.00436 * 10 8 7 40 40 H 1.08005 * 120.00076 * 359.97438 * 15 14 11 41 41 H 1.08005 * 120.00126 * 180.02562 * 16 15 14 42 42 H 1.09001 * 109.47545 * 330.00225 * 18 17 16 43 43 H 1.09006 * 109.47511 * 209.99890 * 18 17 16 44 44 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 45 45 H 1.07995 * 120.00242 * 179.73168 * 27 17 16 46 46 H 1.08005 * 119.99942 * 359.97438 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0418 -0.7252 1.2477 5 6 3.5708 -0.7753 1.2116 6 7 4.0102 -1.4791 -0.0001 7 6 3.5709 -0.7752 -1.2117 8 6 2.0417 -0.7250 -1.2479 9 1 1.7162 -0.1896 -2.1397 10 7 1.5081 -2.0891 -1.2743 11 16 1.1243 -2.8002 -2.7198 12 8 0.3406 -1.8559 -3.4361 13 8 0.6728 -4.1125 -2.4140 14 6 2.6254 -2.9885 -3.6232 15 6 3.3733 -4.1431 -3.4881 16 6 4.5506 -4.2910 -4.1973 17 6 4.9803 -3.2841 -5.0412 18 6 6.2640 -3.4450 -5.8139 19 6 5.9722 -4.0905 -7.1441 20 1 4.9584 -4.3571 -7.4041 21 6 6.9993 -4.3407 -8.0290 22 7 8.2339 -4.0165 -7.7123 23 14 6.6376 -5.1414 -9.6775 24 1 7.9026 -5.2999 -10.4390 25 1 6.0223 -6.4746 -9.4559 26 1 5.7003 -4.2855 -10.4485 27 6 4.2353 -2.1269 -5.1720 28 6 3.0549 -1.9817 -4.4674 29 1 -0.3633 -1.0277 0.0027 30 1 -0.3633 0.5163 0.8886 31 1 -0.3632 0.5114 -0.8914 32 1 1.6447 -1.7401 1.2673 33 1 1.7162 -0.1892 2.1393 34 1 3.9378 -1.3035 2.0916 35 1 3.9675 0.2399 1.2059 36 1 3.6876 -2.4350 -0.0002 37 1 3.9378 -1.3034 -2.0918 38 1 3.9675 0.2400 -1.2060 39 1 1.3795 -2.5758 -0.4452 40 1 3.0378 -4.9298 -2.8284 41 1 5.1348 -5.1934 -4.0920 42 1 6.9522 -4.0734 -5.2484 43 1 6.7156 -2.4663 -5.9762 44 1 8.4218 -3.6011 -6.8561 45 1 4.5732 -1.3384 -5.8280 46 1 2.4701 -1.0798 -4.5735 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886885327.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:50 Heat of formation + Delta-G solvation = -94.399488 kcal Electronic energy + Delta-G solvation = -28056.971317 eV Core-core repulsion = 24264.146844 eV Total energy + Delta-G solvation = -3792.824473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.62583 -40.27773 -38.38745 -37.03245 -35.97052 -35.11800 -33.84186 -33.22768 -32.03212 -30.58164 -28.90692 -27.80008 -25.51164 -23.89030 -23.77146 -23.21573 -22.71405 -21.20060 -20.38420 -19.17879 -19.01964 -18.51297 -17.39281 -16.72239 -16.64823 -16.43915 -15.88631 -15.67715 -15.61178 -15.47767 -15.21386 -15.13755 -14.96603 -14.52496 -14.14653 -13.87741 -13.65881 -13.59000 -13.54080 -13.28559 -13.22675 -13.04686 -12.92268 -12.82483 -12.56124 -12.52272 -12.26839 -12.11349 -12.10701 -11.97750 -11.70872 -11.59148 -11.21944 -11.11235 -10.85301 -10.63143 -10.01274 -9.95525 -9.16295 -8.74261 -6.48433 -0.68757 -0.12600 0.34118 1.50614 1.57418 1.77675 1.94092 2.44263 2.55010 2.76711 3.08099 3.25224 3.42706 3.60721 3.78890 3.82571 3.91526 3.95781 4.03225 4.10624 4.28173 4.39264 4.40049 4.46279 4.54283 4.60240 4.72744 4.76188 4.78369 4.83412 4.85182 4.96994 5.02809 5.04468 5.10130 5.10463 5.12708 5.18949 5.24623 5.35478 5.47392 5.74085 5.78709 5.90629 5.99284 6.07703 6.15670 6.47540 6.49925 7.31050 8.64951 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019048 B = 0.003041 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.589538 B = 9204.483911 C = 9947.803138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 H 0.095 0.905 4 C -0.149 4.149 5 C 0.055 3.945 6 N -0.692 5.692 7 C 0.036 3.964 8 C 0.115 3.885 9 H 0.097 0.903 10 N -1.095 6.095 11 S 2.725 3.275 12 O -0.980 6.980 13 O -0.986 6.986 14 C -0.696 4.696 15 C -0.013 4.013 16 C -0.154 4.154 17 C 0.002 3.998 18 C 0.033 3.967 19 C -0.609 4.609 20 H 0.045 0.955 21 C -0.029 4.029 22 N -0.931 5.931 23 Si 1.115 2.885 24 H -0.280 1.280 25 H -0.271 1.271 26 H -0.270 1.270 27 C -0.152 4.152 28 C -0.014 4.014 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.342 0.658 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.425 0.575 40 H 0.155 0.845 41 H 0.125 0.875 42 H 0.008 0.992 43 H 0.009 0.991 44 H 0.259 0.741 45 H 0.127 0.873 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.724 8.963 20.467 26.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 H 0.113 0.887 4 C -0.188 4.188 5 C -0.075 4.075 6 N -0.321 5.321 7 C -0.095 4.095 8 C 0.006 3.994 9 H 0.115 0.885 10 N -0.858 5.858 11 S 2.815 3.185 12 O -0.970 6.970 13 O -0.976 6.976 14 C -0.783 4.783 15 C -0.032 4.032 16 C -0.173 4.173 17 C 0.001 3.999 18 C -0.004 4.004 19 C -0.647 4.647 20 H 0.064 0.936 21 C -0.228 4.228 22 N -0.568 5.568 23 Si 0.936 3.064 24 H -0.205 1.205 25 H -0.196 1.196 26 H -0.195 1.195 27 C -0.171 4.171 28 C -0.033 4.033 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.161 0.839 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.263 0.737 40 H 0.172 0.828 41 H 0.143 0.857 42 H 0.026 0.974 43 H 0.027 0.973 44 H 0.068 0.932 45 H 0.145 0.855 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.187 8.577 18.650 24.953 hybrid contribution -0.403 0.041 1.295 1.357 sum -14.590 8.618 19.946 26.172 Atomic orbital electron populations 1.21849 0.94586 1.02077 1.02271 1.21345 0.96226 0.99948 0.93107 0.88664 1.22305 0.97189 1.01191 0.98111 1.22111 0.92961 0.99928 0.92484 1.60568 1.63240 1.06282 1.01965 1.22582 0.92208 1.00934 0.93809 1.21771 0.95035 0.81145 1.01457 0.88505 1.55314 1.82196 1.24666 1.23627 1.00796 0.72920 0.72106 0.72712 1.93542 1.66750 1.63711 1.73020 1.93544 1.80226 1.39493 1.84376 1.30756 1.25016 1.03531 1.18952 1.20957 0.91677 0.95107 0.95471 1.21232 0.98172 0.99318 0.98559 1.20571 0.95536 0.93131 0.90629 1.18416 0.91214 0.96113 0.94639 1.22163 0.96010 1.44139 1.02344 0.93626 1.27354 0.92348 0.95930 1.07155 1.70919 1.21013 1.40335 1.24508 0.82952 0.76013 0.76336 0.71092 1.20510 1.19589 1.19521 1.21237 0.96207 0.98227 1.01451 1.20975 0.93795 0.97326 0.91253 0.92933 0.91284 0.92896 0.91612 0.89752 0.90090 0.90678 0.83945 0.91351 0.89037 0.73717 0.82779 0.85742 0.97422 0.97264 0.93184 0.85506 0.82631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.02 71.98 0.65 -1.06 16 2 C -0.09 -0.90 2.61 -10.71 -0.03 -0.92 16 3 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.15 -1.28 5.16 30.64 0.16 -1.12 16 5 C 0.05 0.60 6.55 86.32 0.57 1.16 16 6 N -0.69 -10.83 6.86 -514.00 -3.52 -14.35 16 7 C 0.04 0.59 6.25 86.33 0.54 1.13 16 8 C 0.11 1.62 2.62 45.05 0.12 1.74 16 9 H 0.10 1.44 7.50 -2.39 -0.02 1.43 16 10 N -1.09 -17.03 4.02 -169.16 -0.68 -17.71 16 11 S 2.72 65.03 5.72 -56.49 -0.32 64.70 16 12 O -0.98 -27.90 16.62 -128.00 -2.13 -30.03 16 13 O -0.99 -28.39 17.28 -128.00 -2.21 -30.60 16 14 C -0.70 -19.51 5.05 22.27 0.11 -19.40 16 15 C -0.01 -0.39 9.52 22.27 0.21 -0.18 16 16 C -0.15 -5.69 9.70 22.27 0.22 -5.48 16 17 C 0.00 0.07 5.07 -19.87 -0.10 -0.03 16 18 C 0.03 1.68 4.42 29.10 0.13 1.81 16 19 C -0.61 -34.35 9.09 25.60 0.23 -34.12 16 20 H 0.05 2.58 7.74 -2.91 -0.02 2.55 16 21 C -0.03 -1.68 5.46 84.65 0.46 -1.21 16 22 N -0.93 -56.44 13.65 21.45 0.29 -56.15 16 23 Si 1.12 49.90 29.90 68.60 2.05 51.95 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 C -0.15 -5.53 9.70 22.27 0.22 -5.31 16 28 C -0.01 -0.43 8.60 22.27 0.19 -0.23 16 29 H 0.05 0.64 7.53 -2.39 -0.02 0.62 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.54 6.67 -2.39 -0.02 0.53 16 33 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.34 5.10 8.24 -89.70 -0.74 4.37 16 37 H 0.07 1.40 6.17 -2.39 -0.01 1.39 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.42 4.93 7.08 -96.75 -0.69 4.25 16 40 H 0.15 3.86 7.62 -2.91 -0.02 3.84 16 41 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 42 H 0.01 0.40 7.95 -2.39 -0.02 0.38 16 43 H 0.01 0.48 7.95 -2.38 -0.02 0.47 16 44 H 0.26 15.73 7.22 -92.71 -0.67 15.06 16 45 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 46 H 0.16 3.73 7.62 -2.91 -0.02 3.71 16 Total: -1.00 -72.02 376.60 -3.18 -75.20 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -0.33 Total: 20.22 kcal Atomic # 6 Polarization: -66.90 SS G_CDS: 3.67 Total: -63.23 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -3.91 Total: -88.21 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -4.34 Total: -60.63 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 2.05 Total: 51.95 kcal Atomic # 16 Polarization: 65.03 SS G_CDS: -0.32 Total: 64.70 kcal Total: -72.02 -3.18 -75.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886885327.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.203 kcal (2) G-P(sol) polarization free energy of solvation -72.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds