Wall clock time and date at job start Sat Apr 11 2020 05:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.50247 * 2 1 4 4 C 1.53040 * 109.53530 * 120.10031 * 2 1 3 5 5 N 1.46845 * 109.52063 * 179.13899 * 4 2 1 6 6 C 1.46846 * 111.19772 * 298.25359 * 5 4 2 7 7 C 1.53048 * 109.57537 * 61.71701 * 6 5 4 8 8 C 1.53120 * 109.26921 * 300.91305 * 7 6 5 9 9 H 1.08997 * 109.52466 * 297.62130 * 8 7 6 10 10 N 1.46504 * 109.51792 * 177.49367 * 8 7 6 11 11 S 1.65603 * 119.99915 * 95.12822 * 10 8 7 12 12 O 1.42098 * 106.40446 * 311.46120 * 11 10 8 13 13 O 1.42101 * 106.40400 * 178.53875 * 11 10 8 14 14 C 1.76203 * 107.21747 * 64.99824 * 11 10 8 15 15 C 1.38234 * 120.00235 * 90.00062 * 14 11 10 16 16 C 1.38234 * 120.00240 * 179.97438 * 15 14 11 17 17 C 1.38233 * 120.00037 * 0.26327 * 16 15 14 18 18 C 1.50693 * 120.00207 * 179.72405 * 17 16 15 19 19 C 1.50709 * 109.47444 * 89.99457 * 18 17 16 20 20 H 1.07999 * 119.99476 * 0.02562 * 19 18 17 21 21 C 1.37873 * 120.00210 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99914 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00074 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46785 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47022 * 119.99899 * 23 21 19 26 26 H 1.48496 * 109.47082 * 240.00290 * 23 21 19 27 27 C 1.38238 * 119.99752 * 359.47832 * 17 16 15 28 28 C 1.38234 * 120.00033 * 0.49775 * 27 17 16 29 29 H 1.09002 * 109.47060 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46998 * 300.08255 * 1 2 3 31 31 H 1.09001 * 109.47144 * 60.07433 * 1 2 3 32 32 H 1.08993 * 109.45778 * 299.15509 * 4 2 1 33 33 H 1.08998 * 109.46112 * 59.13137 * 4 2 1 34 34 H 1.00902 * 110.99454 * 174.16575 * 5 4 2 35 35 H 1.09003 * 109.46165 * 181.75737 * 6 5 4 36 36 H 1.08997 * 109.46495 * 301.74138 * 6 5 4 37 37 H 1.08999 * 109.55571 * 180.94369 * 7 6 5 38 38 H 1.09000 * 109.45101 * 60.81902 * 7 6 5 39 39 H 0.97001 * 120.00587 * 275.12644 * 10 8 7 40 40 H 1.07999 * 119.99751 * 359.97438 * 15 14 11 41 41 H 1.08002 * 119.99744 * 179.97438 * 16 15 14 42 42 H 1.09000 * 109.47097 * 209.99342 * 18 17 16 43 43 H 1.09001 * 109.47081 * 329.99847 * 18 17 16 44 44 H 0.97001 * 119.99867 * 179.97438 * 22 21 19 45 45 H 1.07999 * 119.99934 * 180.25938 * 27 17 16 46 46 H 1.08001 * 120.00294 * 179.76453 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0418 -0.7233 1.2478 5 7 3.5101 -0.7412 1.2371 6 6 4.0237 -1.4717 0.0714 7 6 3.5712 -0.7721 -1.2124 8 6 2.0412 -0.7234 -1.2490 9 1 1.6448 -1.7386 -1.2698 10 7 1.6029 -0.0020 -2.4464 11 16 1.2113 -0.8392 -3.8205 12 8 2.2744 -1.7538 -4.0498 13 8 0.7987 0.1283 -4.7760 14 6 -0.2108 -1.8118 -3.4513 15 6 -1.4754 -1.2919 -3.6542 16 6 -2.5911 -2.0552 -3.3651 17 6 -2.4422 -3.3363 -2.8678 18 6 -3.6584 -4.1661 -2.5467 19 6 -4.0630 -4.9567 -3.7643 20 1 -3.4958 -4.8675 -4.6790 21 6 -5.1572 -5.7938 -3.7105 22 7 -5.8481 -5.9021 -2.5967 23 14 -5.6591 -6.7732 -5.2199 24 1 -4.7258 -6.4753 -6.3360 25 1 -5.6094 -8.2241 -4.9076 26 1 -7.0405 -6.3990 -5.6159 27 6 -1.1775 -3.8582 -2.6699 28 6 -0.0618 -3.0951 -2.9595 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5151 0.8892 31 1 -0.3633 0.5127 -0.8907 32 1 1.6913 -0.2024 2.1388 33 1 1.6663 -1.7466 1.2540 34 1 3.8732 -1.1284 2.0952 35 1 5.1129 -1.4943 0.1080 36 1 3.6387 -2.4913 0.0831 37 1 3.9385 -1.3239 -2.0776 38 1 3.9682 0.2429 -1.2319 39 1 1.5420 0.9660 -2.4344 40 1 -1.5918 -0.2894 -4.0387 41 1 -3.5792 -1.6488 -3.5233 42 1 -3.4265 -4.8499 -1.7302 43 1 -4.4775 -3.5108 -2.2504 44 1 -6.6182 -6.4908 -2.5590 45 1 -1.0611 -4.8607 -2.2853 46 1 0.9263 -3.5014 -2.8013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886885377.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:03 Heat of formation + Delta-G solvation = -91.788084 kcal Electronic energy + Delta-G solvation = -27812.129224 eV Core-core repulsion = 24019.417991 eV Total energy + Delta-G solvation = -3792.711234 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.30627 -40.09683 -38.32356 -36.97926 -35.81832 -35.59710 -33.44553 -33.32499 -31.97819 -31.00182 -29.25829 -27.25781 -25.60720 -24.30857 -23.73341 -22.73547 -22.49342 -21.13564 -20.35218 -18.97180 -18.59613 -18.32221 -17.75122 -16.96708 -16.86276 -16.37444 -15.99963 -15.76840 -15.64289 -15.32679 -15.06928 -14.80778 -14.64884 -14.46210 -14.44117 -13.93885 -13.62991 -13.42350 -13.41171 -13.28327 -13.21081 -13.16059 -12.82174 -12.77859 -12.69942 -12.67128 -12.25062 -12.14912 -12.05280 -11.97439 -11.73469 -11.65803 -11.46660 -11.24687 -10.66868 -10.39359 -9.97068 -9.95570 -9.36925 -8.28352 -6.40931 -0.63698 -0.07489 0.38641 1.36272 1.37978 1.50477 1.98633 2.33764 2.55080 2.81198 3.04437 3.30422 3.31648 3.62243 3.85220 3.88980 3.93723 3.98482 4.14627 4.20304 4.21863 4.45288 4.46210 4.46674 4.52651 4.70461 4.74887 4.79721 4.81739 4.89540 4.91749 4.96487 5.03253 5.09327 5.21379 5.23604 5.25340 5.28338 5.32298 5.36619 5.50565 5.66234 5.85369 5.91136 6.07947 6.08791 6.10870 6.53825 6.71104 7.28331 8.81849 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015737 B = 0.003074 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.791103 B = 9107.408274 C = 9901.470317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.084 4.084 3 H 0.094 0.906 4 C 0.061 3.939 5 N -0.693 5.693 6 C 0.057 3.943 7 C -0.136 4.136 8 C 0.153 3.847 9 H 0.077 0.923 10 N -1.095 6.095 11 S 2.721 3.279 12 O -0.980 6.980 13 O -0.987 6.987 14 C -0.698 4.698 15 C -0.016 4.016 16 C -0.153 4.153 17 C -0.001 4.001 18 C 0.048 3.952 19 C -0.533 4.533 20 H 0.053 0.947 21 C 0.010 3.990 22 N -0.925 5.925 23 Si 0.964 3.036 24 H -0.268 1.268 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.153 4.153 28 C -0.020 4.020 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.029 0.971 34 H 0.354 0.646 35 H 0.090 0.910 36 H 0.031 0.969 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.429 0.571 40 H 0.154 0.846 41 H 0.129 0.871 42 H 0.013 0.987 43 H 0.013 0.987 44 H 0.267 0.733 45 H 0.129 0.871 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.650 13.298 8.078 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.105 4.105 3 H 0.112 0.888 4 C -0.069 4.069 5 N -0.325 5.325 6 C -0.073 4.073 7 C -0.176 4.176 8 C 0.046 3.954 9 H 0.095 0.905 10 N -0.857 5.857 11 S 2.811 3.189 12 O -0.970 6.970 13 O -0.977 6.977 14 C -0.785 4.785 15 C -0.035 4.035 16 C -0.172 4.172 17 C -0.001 4.001 18 C 0.012 3.988 19 C -0.571 4.571 20 H 0.071 0.929 21 C -0.189 4.189 22 N -0.564 5.564 23 Si 0.788 3.212 24 H -0.193 1.193 25 H -0.200 1.200 26 H -0.201 1.201 27 C -0.172 4.172 28 C -0.039 4.039 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.047 0.953 34 H 0.173 0.827 35 H 0.108 0.892 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.267 0.733 40 H 0.172 0.828 41 H 0.147 0.853 42 H 0.032 0.968 43 H 0.032 0.968 44 H 0.076 0.924 45 H 0.146 0.854 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 19.006 13.666 7.041 24.445 hybrid contribution -1.713 -1.721 0.030 2.429 sum 17.293 11.945 7.071 22.175 Atomic orbital electron populations 1.21843 0.94542 1.01820 1.02791 1.21385 0.95463 1.00915 0.92687 0.88809 1.21992 0.87791 0.98841 0.98260 1.60289 1.07828 1.58486 1.05885 1.21921 1.00759 0.94610 0.89977 1.22145 0.94518 1.02882 0.98020 1.21018 0.94867 0.95271 0.84271 0.90541 1.55287 1.82657 1.19305 1.28431 1.00911 0.72978 0.72596 0.72422 1.93540 1.53441 1.65670 1.84326 1.93539 1.83745 1.61106 1.59304 1.30751 1.17120 1.10349 1.20299 1.20988 0.90483 0.99737 0.92341 1.21287 0.99615 0.94499 1.01782 1.20794 0.96045 0.93709 0.89602 1.18261 0.90458 0.93708 0.96417 1.21320 1.12766 1.25387 0.97618 0.92868 1.25849 0.96095 0.97717 0.99233 1.70059 1.19399 1.38984 1.27970 0.85416 0.78252 0.78371 0.79154 1.19253 1.20035 1.20057 1.21272 0.91952 1.00680 1.03273 1.20984 0.99482 0.91604 0.91852 0.93813 0.91249 0.92001 0.89167 0.95297 0.82669 0.89151 0.95084 0.90909 0.89930 0.73321 0.82823 0.85303 0.96839 0.96832 0.92379 0.85353 0.83041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.07 71.98 0.65 -1.76 16 2 C -0.08 -1.19 2.50 -10.74 -0.03 -1.21 16 3 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 4 C 0.06 0.80 5.84 86.33 0.50 1.31 16 5 N -0.69 -8.55 6.85 -514.00 -3.52 -12.07 16 6 C 0.06 0.77 6.55 86.33 0.57 1.34 16 7 C -0.14 -2.16 5.71 30.65 0.17 -1.98 16 8 C 0.15 2.56 2.14 45.07 0.10 2.66 16 9 H 0.08 1.41 7.24 -2.39 -0.02 1.39 16 10 N -1.10 -19.00 4.83 -169.05 -0.82 -19.81 16 11 S 2.72 68.72 5.65 -56.49 -0.32 68.40 16 12 O -0.98 -28.94 16.61 -128.00 -2.13 -31.06 16 13 O -0.99 -29.53 17.28 -128.00 -2.21 -31.74 16 14 C -0.70 -20.35 5.82 22.27 0.13 -20.22 16 15 C -0.02 -0.50 9.52 22.27 0.21 -0.29 16 16 C -0.15 -5.61 9.70 22.27 0.22 -5.40 16 17 C 0.00 -0.05 5.07 -19.87 -0.10 -0.15 16 18 C 0.05 2.46 5.10 29.10 0.15 2.61 16 19 C -0.53 -29.55 9.09 25.60 0.23 -29.32 16 20 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 21 C 0.01 0.56 5.46 84.65 0.46 1.02 16 22 N -0.92 -53.86 13.29 21.45 0.28 -53.57 16 23 Si 0.96 43.50 29.54 68.60 2.03 45.53 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 26 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 27 C -0.15 -5.59 9.70 22.27 0.22 -5.37 16 28 C -0.02 -0.61 8.91 22.27 0.20 -0.42 16 29 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.98 7.68 -2.39 -0.02 0.96 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.35 3.23 8.90 -89.69 -0.80 2.43 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 36 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.07 1.33 7.70 -2.39 -0.02 1.31 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.43 5.42 8.84 -96.75 -0.86 4.57 16 40 H 0.15 3.92 7.62 -2.91 -0.02 3.90 16 41 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 42 H 0.01 0.71 8.09 -2.39 -0.02 0.70 16 43 H 0.01 0.72 8.09 -2.39 -0.02 0.70 16 44 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 45 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 46 H 0.15 3.86 7.62 -2.91 -0.02 3.84 16 Total: -1.00 -69.18 384.60 -3.66 -72.84 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -0.66 Total: 18.69 kcal Atomic # 6 Polarization: -60.88 SS G_CDS: 3.68 Total: -57.19 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -4.05 Total: -85.45 kcal Atomic # 8 Polarization: -58.47 SS G_CDS: -4.34 Total: -62.81 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 68.72 SS G_CDS: -0.32 Total: 68.40 kcal Total: -69.18 -3.66 -72.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886885377.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.948 kcal (2) G-P(sol) polarization free energy of solvation -69.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds