Wall clock time and date at job start Sat Apr 11 2020 05:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.49434 * 2 1 4 4 N 1.46900 * 109.49230 * 120.05774 * 2 1 3 5 5 C 1.46898 * 111.26847 * 183.09240 * 4 2 1 6 6 C 1.53245 * 109.33716 * 296.89124 * 5 4 2 7 7 N 1.47087 * 108.52064 * 53.83159 * 6 5 4 8 8 S 1.65596 * 120.88032 * 128.81844 * 7 6 5 9 9 O 1.42099 * 106.40304 * 336.45633 * 8 7 6 10 10 O 1.42104 * 106.40045 * 203.54093 * 8 7 6 11 11 C 1.76200 * 107.21949 * 90.00152 * 8 7 6 12 12 C 1.38228 * 120.00083 * 89.99617 * 11 8 7 13 13 C 1.38238 * 119.99745 * 179.97438 * 12 11 8 14 14 C 1.38234 * 120.00181 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00195 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.46848 * 89.99989 * 15 14 13 17 17 H 1.07995 * 120.00496 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99572 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99951 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 59.99744 * 20 18 16 22 22 H 1.48503 * 109.47261 * 299.99924 * 20 18 16 23 23 H 1.48500 * 109.47454 * 179.97438 * 20 18 16 24 24 C 1.38237 * 119.99973 * 0.25471 * 14 13 12 25 25 C 1.38237 * 119.99388 * 269.97542 * 11 8 7 26 26 C 1.47078 * 118.23406 * 309.09080 * 7 6 5 27 27 H 1.08998 * 109.62644 * 170.62629 * 26 7 6 28 28 C 1.53008 * 109.62719 * 291.19732 * 26 7 6 29 29 H 1.09004 * 109.47097 * 299.94246 * 1 2 3 30 30 H 1.08995 * 109.47173 * 59.94455 * 1 2 3 31 31 H 1.08996 * 109.47144 * 179.97438 * 1 2 3 32 32 H 1.00895 * 110.99991 * 58.94011 * 4 2 1 33 33 H 1.08997 * 109.49803 * 176.93491 * 5 4 2 34 34 H 1.09001 * 109.51898 * 56.85944 * 5 4 2 35 35 H 1.09001 * 109.63035 * 294.12282 * 6 5 4 36 36 H 1.08998 * 109.78843 * 173.63572 * 6 5 4 37 37 H 1.07995 * 120.00333 * 359.97438 * 12 11 8 38 38 H 1.08004 * 120.00215 * 179.97438 * 13 12 11 39 39 H 1.09002 * 109.47060 * 330.00024 * 15 14 13 40 40 H 1.08998 * 109.47176 * 210.00671 * 15 14 13 41 41 H 0.97006 * 119.99995 * 359.97438 * 19 18 16 42 42 H 1.08001 * 119.99912 * 179.72830 * 24 14 13 43 43 H 1.07998 * 120.00364 * 0.02562 * 25 11 8 44 44 H 1.09010 * 109.46641 * 60.00473 * 28 26 7 45 45 H 1.09002 * 109.47313 * 180.02562 * 28 26 7 46 46 H 1.09002 * 109.47527 * 300.00703 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 7 2.0202 -0.6936 1.1986 5 6 3.4866 -0.6528 1.2756 6 6 4.0787 -1.4033 0.0778 7 7 3.5047 -0.8425 -1.1550 8 16 4.4798 -0.3581 -2.4027 9 8 5.7510 -0.0775 -1.8329 10 8 3.7344 0.5954 -3.1475 11 6 4.7044 -1.7498 -3.4598 12 6 3.8267 -1.9734 -4.5040 13 6 4.0034 -3.0650 -5.3336 14 6 5.0574 -3.9331 -5.1186 15 6 5.2496 -5.1235 -6.0227 16 6 6.1333 -4.7372 -7.1806 17 1 6.5176 -3.7307 -7.2543 18 6 6.4510 -5.6689 -8.1460 19 7 5.9826 -6.8945 -8.0565 20 14 7.5470 -5.1904 -9.5810 21 1 8.8662 -4.7410 -9.0680 22 1 6.9103 -4.0866 -10.3436 23 1 7.7363 -6.3633 -10.4719 24 6 5.9317 -3.7127 -4.0708 25 6 5.7587 -2.6177 -3.2450 26 6 2.0422 -0.7179 -1.2476 27 1 1.7793 -0.1412 -2.1343 28 6 1.4119 -2.1098 -1.3295 29 1 -0.3633 0.5130 0.8905 30 1 -0.3633 0.5147 -0.8894 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6827 -1.6439 1.2298 33 1 3.8157 -1.1267 2.2003 34 1 3.8235 0.3836 1.2580 35 1 3.8292 -2.4619 0.1492 36 1 5.1618 -1.2824 0.0653 37 1 3.0030 -1.2954 -4.6717 38 1 3.3174 -3.2400 -6.1492 39 1 4.2814 -5.4540 -6.3989 40 1 5.7174 -5.9332 -5.4627 41 1 5.4137 -7.1431 -7.3111 42 1 6.7526 -4.3935 -3.9002 43 1 6.4444 -2.4430 -2.4291 44 1 1.6709 -2.6790 -0.4366 45 1 0.3283 -2.0145 -1.3985 46 1 1.7877 -2.6275 -2.2121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886885438.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:09 Heat of formation + Delta-G solvation = -56.597544 kcal Electronic energy + Delta-G solvation = -27944.833933 eV Core-core repulsion = 24153.648676 eV Total energy + Delta-G solvation = -3791.185257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.85837 -38.93251 -37.32808 -35.86943 -34.10822 -34.03102 -33.41563 -31.55895 -30.69914 -28.89231 -27.50093 -27.13524 -24.41204 -23.56574 -22.95101 -22.44048 -21.16115 -20.27307 -18.98565 -18.11029 -17.50537 -16.94470 -16.38577 -15.73685 -15.37497 -15.34277 -15.04428 -14.68127 -14.43224 -14.33378 -14.00225 -13.77264 -13.43829 -13.31198 -13.26727 -13.17989 -12.54560 -12.35484 -12.31797 -12.11795 -12.08058 -11.91109 -11.83680 -11.77848 -11.67569 -11.51014 -11.24209 -11.09650 -10.90787 -10.90429 -10.60052 -10.27403 -10.06417 -9.75077 -9.29933 -8.70534 -8.55258 -8.52525 -8.32119 -6.54637 -4.27543 0.34108 1.21584 1.67339 2.82354 3.36620 3.37298 3.56423 3.67546 3.82140 3.97827 4.16666 4.42349 4.44073 4.49092 4.67472 4.74466 4.79727 5.01801 5.04325 5.08553 5.12049 5.13675 5.19633 5.23107 5.35374 5.41785 5.49974 5.55989 5.61746 5.66044 5.68610 5.72695 5.77680 5.94149 5.95511 6.11717 6.19503 6.28193 6.41782 6.61400 6.68318 6.70739 6.93105 7.00944 7.26447 7.33187 7.89538 8.25282 8.65899 9.43618 10.84784 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022240 B = 0.002799 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.669121 B =10002.937906 C =10295.139830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.080 3.920 3 H 0.086 0.914 4 N -0.677 5.677 5 C 0.048 3.952 6 C 0.078 3.922 7 N -0.996 5.996 8 S 2.694 3.306 9 O -0.962 6.962 10 O -0.962 6.962 11 C -0.702 4.702 12 C -0.022 4.022 13 C -0.145 4.145 14 C 0.031 3.969 15 C 0.027 3.973 16 C -0.598 4.598 17 H 0.053 0.947 18 C 0.020 3.980 19 N -0.906 5.906 20 Si 1.071 2.929 21 H -0.286 1.286 22 H -0.286 1.286 23 H -0.280 1.280 24 C -0.145 4.145 25 C -0.022 4.022 26 C 0.110 3.890 27 H 0.106 0.894 28 C -0.169 4.169 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.341 0.659 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.269 0.731 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.065 10.847 19.029 24.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 H 0.104 0.896 4 N -0.307 5.307 5 C -0.083 4.083 6 C -0.049 4.049 7 N -0.833 5.833 8 S 2.789 3.211 9 O -0.952 6.952 10 O -0.952 6.952 11 C -0.791 4.791 12 C -0.041 4.041 13 C -0.164 4.164 14 C 0.031 3.969 15 C -0.009 4.009 16 C -0.636 4.636 17 H 0.071 0.929 18 C -0.184 4.184 19 N -0.541 5.541 20 Si 0.898 3.102 21 H -0.212 1.212 22 H -0.212 1.212 23 H -0.205 1.205 24 C -0.164 4.164 25 C -0.042 4.042 26 C 0.003 3.997 27 H 0.124 0.876 28 C -0.228 4.228 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.160 0.840 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.080 0.920 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.077 11.658 17.959 23.256 hybrid contribution -0.396 -0.895 0.300 1.024 sum -9.473 10.762 18.259 23.216 Atomic orbital electron populations 1.21874 0.93386 1.02601 1.02619 1.21782 0.95732 0.98421 0.87294 0.89567 1.60723 1.09132 1.21813 1.39015 1.22344 0.87632 1.01591 0.96751 1.22216 0.99912 0.98060 0.84735 1.57948 1.16064 1.79982 1.29313 1.01732 0.72733 0.74067 0.72525 1.93543 1.40251 1.83696 1.77706 1.93542 1.72340 1.58069 1.71246 1.30420 1.07991 1.23623 1.17090 1.20739 0.95922 0.95585 0.91891 1.21210 0.99650 0.95367 1.00138 1.20860 0.89765 0.95320 0.90986 1.18645 0.97935 0.90525 0.93840 1.21828 1.33461 0.99740 1.08575 0.92913 1.25925 0.98192 0.93377 1.00914 1.70807 1.31851 1.18694 1.32780 0.83506 0.75689 0.75675 0.75310 1.21229 1.21217 1.20546 1.21215 1.00447 0.98486 0.96235 1.20747 0.93733 0.92069 0.97603 1.21708 0.78746 0.97841 1.01446 0.87559 1.22243 1.01330 0.96363 1.02854 0.91481 0.91657 0.91987 0.83972 0.89310 0.90233 0.91252 0.88241 0.85323 0.85427 0.95678 0.95684 0.92039 0.85429 0.85312 0.92295 0.90712 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 8.96 37.16 0.33 -0.56 16 2 C 0.08 0.62 2.91 -67.82 -0.20 0.42 16 3 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 4 N -0.68 -4.92 6.47 -106.71 -0.69 -5.61 16 5 C 0.05 0.35 6.70 -3.70 -0.02 0.33 16 6 C 0.08 0.66 6.25 -3.60 -0.02 0.64 16 7 N -1.00 -10.42 3.03 -106.44 -0.32 -10.74 16 8 S 2.69 38.05 5.74 -107.50 -0.62 37.43 16 9 O -0.96 -15.47 15.89 -57.17 -0.91 -16.38 16 10 O -0.96 -15.51 15.89 -57.17 -0.91 -16.42 16 11 C -0.70 -11.13 5.97 -39.59 -0.24 -11.37 16 12 C -0.02 -0.36 9.52 -39.59 -0.38 -0.74 16 13 C -0.14 -2.71 9.70 -39.58 -0.38 -3.09 16 14 C 0.03 0.65 5.07 -104.62 -0.53 0.12 16 15 C 0.03 0.66 4.42 -29.04 -0.13 0.54 16 16 C -0.60 -16.48 9.09 -34.44 -0.31 -16.79 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 18 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 19 N -0.91 -26.67 13.65 55.43 0.76 -25.91 16 20 Si 1.07 24.75 29.90 -169.99 -5.08 19.66 16 21 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C -0.14 -2.71 9.70 -39.58 -0.38 -3.10 16 25 C -0.02 -0.36 9.52 -39.58 -0.38 -0.74 16 26 C 0.11 0.99 2.88 -67.72 -0.20 0.80 16 27 H 0.11 1.03 6.93 -51.93 -0.36 0.67 16 28 C -0.17 -1.33 8.55 37.16 0.32 -1.01 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.33 6.36 -51.93 -0.33 0.00 16 32 H 0.34 2.15 7.19 -39.29 -0.28 1.87 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.52 7.65 -51.93 -0.40 0.12 16 36 H 0.10 0.88 6.93 -51.93 -0.36 0.52 16 37 H 0.13 1.81 7.62 -52.49 -0.40 1.41 16 38 H 0.13 2.27 8.06 -52.48 -0.42 1.85 16 39 H 0.03 0.63 7.95 -51.93 -0.41 0.21 16 40 H 0.03 0.63 7.95 -51.93 -0.41 0.21 16 41 H 0.27 7.81 7.22 -40.82 -0.29 7.51 16 42 H 0.13 2.28 8.06 -52.49 -0.42 1.85 16 43 H 0.13 1.81 7.62 -52.49 -0.40 1.41 16 44 H 0.06 0.41 6.12 -51.92 -0.32 0.10 16 45 H 0.07 0.47 6.39 -51.93 -0.33 0.14 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 375.23 15.07 5.65 5.65 Total: -1.00 -33.00 375.23 -11.62 -44.62 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.88 Total: 1.78 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: -2.62 Total: -34.07 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: -0.26 Total: -42.27 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -1.82 Total: -32.81 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.08 Total: 19.66 kcal Atomic # 16 Polarization: 38.05 SS G_CDS: -0.62 Total: 37.43 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.00 -11.62 -44.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886885438.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.980 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds