Wall clock time and date at job start Sat Apr 11 2020 05:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.49434 * 2 1 4 4 N 1.46900 * 109.49230 * 120.05774 * 2 1 3 5 5 C 1.46898 * 111.26847 * 183.09240 * 4 2 1 6 6 C 1.53245 * 109.33716 * 296.89124 * 5 4 2 7 7 N 1.47087 * 108.52064 * 53.83159 * 6 5 4 8 8 S 1.65596 * 120.88032 * 128.81844 * 7 6 5 9 9 O 1.42099 * 106.40304 * 336.45633 * 8 7 6 10 10 O 1.42104 * 106.40045 * 203.54093 * 8 7 6 11 11 C 1.76200 * 107.21949 * 90.00152 * 8 7 6 12 12 C 1.38228 * 120.00083 * 89.99617 * 11 8 7 13 13 C 1.38238 * 119.99745 * 179.97438 * 12 11 8 14 14 C 1.38234 * 120.00181 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00195 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.46848 * 89.99989 * 15 14 13 17 17 H 1.07995 * 120.00496 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99572 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99951 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 59.99744 * 20 18 16 22 22 H 1.48503 * 109.47261 * 299.99924 * 20 18 16 23 23 H 1.48500 * 109.47454 * 179.97438 * 20 18 16 24 24 C 1.38237 * 119.99973 * 0.25471 * 14 13 12 25 25 C 1.38237 * 119.99388 * 269.97542 * 11 8 7 26 26 C 1.47078 * 118.23406 * 309.09080 * 7 6 5 27 27 H 1.08998 * 109.62644 * 170.62629 * 26 7 6 28 28 C 1.53008 * 109.62719 * 291.19732 * 26 7 6 29 29 H 1.09004 * 109.47097 * 299.94246 * 1 2 3 30 30 H 1.08995 * 109.47173 * 59.94455 * 1 2 3 31 31 H 1.08996 * 109.47144 * 179.97438 * 1 2 3 32 32 H 1.00895 * 110.99991 * 58.94011 * 4 2 1 33 33 H 1.08997 * 109.49803 * 176.93491 * 5 4 2 34 34 H 1.09001 * 109.51898 * 56.85944 * 5 4 2 35 35 H 1.09001 * 109.63035 * 294.12282 * 6 5 4 36 36 H 1.08998 * 109.78843 * 173.63572 * 6 5 4 37 37 H 1.07995 * 120.00333 * 359.97438 * 12 11 8 38 38 H 1.08004 * 120.00215 * 179.97438 * 13 12 11 39 39 H 1.09002 * 109.47060 * 330.00024 * 15 14 13 40 40 H 1.08998 * 109.47176 * 210.00671 * 15 14 13 41 41 H 0.97006 * 119.99995 * 359.97438 * 19 18 16 42 42 H 1.08001 * 119.99912 * 179.72830 * 24 14 13 43 43 H 1.07998 * 120.00364 * 0.02562 * 25 11 8 44 44 H 1.09010 * 109.46641 * 60.00473 * 28 26 7 45 45 H 1.09002 * 109.47313 * 180.02562 * 28 26 7 46 46 H 1.09002 * 109.47527 * 300.00703 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 7 2.0202 -0.6936 1.1986 5 6 3.4866 -0.6528 1.2756 6 6 4.0787 -1.4033 0.0778 7 7 3.5047 -0.8425 -1.1550 8 16 4.4798 -0.3581 -2.4027 9 8 5.7510 -0.0775 -1.8329 10 8 3.7344 0.5954 -3.1475 11 6 4.7044 -1.7498 -3.4598 12 6 3.8267 -1.9734 -4.5040 13 6 4.0034 -3.0650 -5.3336 14 6 5.0574 -3.9331 -5.1186 15 6 5.2496 -5.1235 -6.0227 16 6 6.1333 -4.7372 -7.1806 17 1 6.5176 -3.7307 -7.2543 18 6 6.4510 -5.6689 -8.1460 19 7 5.9826 -6.8945 -8.0565 20 14 7.5470 -5.1904 -9.5810 21 1 8.8662 -4.7410 -9.0680 22 1 6.9103 -4.0866 -10.3436 23 1 7.7363 -6.3633 -10.4719 24 6 5.9317 -3.7127 -4.0708 25 6 5.7587 -2.6177 -3.2450 26 6 2.0422 -0.7179 -1.2476 27 1 1.7793 -0.1412 -2.1343 28 6 1.4119 -2.1098 -1.3295 29 1 -0.3633 0.5130 0.8905 30 1 -0.3633 0.5147 -0.8894 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6827 -1.6439 1.2298 33 1 3.8157 -1.1267 2.2003 34 1 3.8235 0.3836 1.2580 35 1 3.8292 -2.4619 0.1492 36 1 5.1618 -1.2824 0.0653 37 1 3.0030 -1.2954 -4.6717 38 1 3.3174 -3.2400 -6.1492 39 1 4.2814 -5.4540 -6.3989 40 1 5.7174 -5.9332 -5.4627 41 1 5.4137 -7.1431 -7.3111 42 1 6.7526 -4.3935 -3.9002 43 1 6.4444 -2.4430 -2.4291 44 1 1.6709 -2.6790 -0.4366 45 1 0.3283 -2.0145 -1.3985 46 1 1.7877 -2.6275 -2.2121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886885438.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:08 Heat of formation + Delta-G solvation = -78.997360 kcal Electronic energy + Delta-G solvation = -27945.805262 eV Core-core repulsion = 24153.648676 eV Total energy + Delta-G solvation = -3792.156586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.52826 -40.38003 -38.53866 -37.09279 -36.00587 -34.81625 -34.04185 -33.29817 -32.09919 -29.50605 -28.95228 -28.12767 -25.57213 -25.03528 -23.90641 -23.53747 -22.73950 -21.06051 -19.97365 -19.21315 -19.06131 -18.57392 -17.35343 -16.62841 -16.52264 -16.29598 -15.94187 -15.79611 -15.70334 -15.55491 -15.29103 -15.15877 -14.90835 -14.60179 -14.07690 -13.97446 -13.87661 -13.60326 -13.58989 -13.36700 -13.29966 -13.05976 -12.91344 -12.59548 -12.58964 -12.57634 -12.44885 -12.19071 -12.17707 -12.00469 -11.89012 -11.69349 -11.62994 -11.17725 -10.65880 -10.55008 -10.09658 -10.03458 -9.16742 -8.77295 -6.51621 -0.79550 -0.19231 0.26114 1.48950 1.55563 1.76033 1.79308 2.40738 2.51578 2.65943 3.05125 3.09362 3.25445 3.68863 3.70765 3.82431 3.84025 3.96763 4.02723 4.06868 4.17734 4.31269 4.32597 4.42987 4.49665 4.52380 4.56211 4.66125 4.71625 4.75355 4.86904 4.92039 4.94610 4.96969 5.03746 5.04210 5.10242 5.16200 5.17148 5.31530 5.41677 5.55996 5.66841 5.74038 5.84961 6.02936 6.04279 6.44394 6.50868 7.27673 8.61979 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022240 B = 0.002799 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.669121 B =10002.937906 C =10295.139830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.083 3.917 3 H 0.074 0.926 4 N -0.676 5.676 5 C 0.051 3.949 6 C 0.071 3.929 7 N -0.987 5.987 8 S 2.714 3.286 9 O -0.979 6.979 10 O -0.981 6.981 11 C -0.698 4.698 12 C -0.017 4.017 13 C -0.154 4.154 14 C 0.000 4.000 15 C 0.034 3.966 16 C -0.610 4.610 17 H 0.045 0.955 18 C -0.028 4.028 19 N -0.930 5.930 20 Si 1.115 2.885 21 H -0.271 1.271 22 H -0.270 1.270 23 H -0.279 1.279 24 C -0.154 4.154 25 C -0.018 4.018 26 C 0.104 3.896 27 H 0.099 0.901 28 C -0.167 4.167 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.349 0.651 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.153 0.847 38 H 0.128 0.872 39 H 0.010 0.990 40 H 0.010 0.990 41 H 0.259 0.741 42 H 0.129 0.871 43 H 0.155 0.845 44 H 0.069 0.931 45 H 0.092 0.908 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.638 12.217 20.662 26.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 H 0.092 0.908 4 N -0.306 5.306 5 C -0.080 4.080 6 C -0.055 4.055 7 N -0.827 5.827 8 S 2.807 3.193 9 O -0.969 6.969 10 O -0.971 6.971 11 C -0.785 4.785 12 C -0.036 4.036 13 C -0.173 4.173 14 C -0.001 4.001 15 C -0.003 4.003 16 C -0.648 4.648 17 H 0.063 0.937 18 C -0.227 4.227 19 N -0.566 5.566 20 Si 0.936 3.064 21 H -0.196 1.196 22 H -0.196 1.196 23 H -0.204 1.204 24 C -0.173 4.173 25 C -0.037 4.037 26 C -0.003 4.003 27 H 0.117 0.883 28 C -0.225 4.225 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.170 0.830 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.171 0.829 38 H 0.146 0.854 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.068 0.932 42 H 0.147 0.853 43 H 0.173 0.827 44 H 0.088 0.912 45 H 0.111 0.889 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.655 13.013 19.593 25.426 hybrid contribution -0.300 -1.243 -0.037 1.279 sum -9.955 11.770 19.556 24.901 Atomic orbital electron populations 1.21858 0.91934 1.03387 1.02914 1.21763 0.96807 0.97630 0.86745 0.90777 1.60715 1.09067 1.22373 1.38481 1.22378 0.87565 1.01113 0.96980 1.22489 0.99907 0.99111 0.84040 1.57732 1.16522 1.79865 1.28577 1.01162 0.72444 0.73298 0.72430 1.93518 1.41746 1.83813 1.77861 1.93515 1.72635 1.58631 1.72300 1.30906 1.07065 1.23584 1.16958 1.20971 0.96554 0.94927 0.91179 1.21267 0.99249 0.95910 1.00829 1.20610 0.92137 0.95193 0.92119 1.18419 0.96331 0.91858 0.93724 1.22152 1.33639 0.99313 1.09703 0.93706 1.27360 0.98928 0.92926 1.03478 1.70921 1.33058 1.19737 1.32918 0.82954 0.74849 0.75895 0.72724 1.19577 1.19555 1.20382 1.21279 1.00233 0.99543 0.96237 1.21001 0.94107 0.91010 0.97563 1.21932 0.77605 0.98768 1.01955 0.88322 1.22241 1.02334 0.95364 1.02596 0.91315 0.91290 0.90933 0.83044 0.87117 0.91173 0.89674 0.88488 0.82895 0.85360 0.97192 0.97187 0.93163 0.85321 0.82698 0.91194 0.88930 0.93292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.96 71.98 0.64 -0.73 16 2 C 0.08 1.10 2.91 44.84 0.13 1.23 16 3 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 4 N -0.68 -7.93 6.47 -491.52 -3.18 -11.11 16 5 C 0.05 0.61 6.70 86.39 0.58 1.19 16 6 C 0.07 1.03 6.25 86.35 0.54 1.57 16 7 N -0.99 -18.66 3.03 -490.67 -1.49 -20.15 16 8 S 2.71 72.14 5.74 -56.49 -0.32 71.81 16 9 O -0.98 -29.82 15.89 -128.00 -2.03 -31.85 16 10 O -0.98 -30.18 15.89 -128.00 -2.03 -32.21 16 11 C -0.70 -21.16 5.97 22.27 0.13 -21.03 16 12 C -0.02 -0.55 9.52 22.27 0.21 -0.33 16 13 C -0.15 -5.79 9.70 22.27 0.22 -5.57 16 14 C 0.00 -0.01 5.07 -19.87 -0.10 -0.11 16 15 C 0.03 1.71 4.42 29.10 0.13 1.84 16 16 C -0.61 -34.50 9.09 25.60 0.23 -34.27 16 17 H 0.04 2.55 7.74 -2.91 -0.02 2.52 16 18 C -0.03 -1.61 5.46 84.66 0.46 -1.15 16 19 N -0.93 -56.11 13.65 21.45 0.29 -55.82 16 20 Si 1.12 49.82 29.90 68.60 2.05 51.87 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 C -0.15 -5.79 9.70 22.27 0.22 -5.58 16 25 C -0.02 -0.56 9.52 22.27 0.21 -0.35 16 26 C 0.10 1.66 2.88 44.81 0.13 1.79 16 27 H 0.10 1.75 6.93 -2.39 -0.02 1.73 16 28 C -0.17 -2.21 8.55 71.98 0.62 -1.59 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.55 6.36 -2.39 -0.02 0.54 16 32 H 0.35 3.24 7.19 -89.70 -0.65 2.59 16 33 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 1.00 7.65 -2.39 -0.02 0.98 16 36 H 0.10 1.50 6.93 -2.39 -0.02 1.48 16 37 H 0.15 4.05 7.62 -2.91 -0.02 4.02 16 38 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 39 H 0.01 0.52 7.95 -2.39 -0.02 0.50 16 40 H 0.01 0.52 7.95 -2.39 -0.02 0.51 16 41 H 0.26 15.64 7.22 -92.70 -0.67 14.98 16 42 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 43 H 0.16 4.02 7.62 -2.91 -0.02 4.00 16 44 H 0.07 0.77 6.12 -2.38 -0.01 0.76 16 45 H 0.09 0.90 6.39 -2.39 -0.02 0.89 16 46 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -71.60 375.23 -1.92 -73.52 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.44 Total: 17.02 kcal Atomic # 6 Polarization: -67.44 SS G_CDS: 4.35 Total: -63.09 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -4.37 Total: -87.07 kcal Atomic # 8 Polarization: -60.00 SS G_CDS: -4.07 Total: -64.06 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 2.05 Total: 51.87 kcal Atomic # 16 Polarization: 72.14 SS G_CDS: -0.32 Total: 71.81 kcal Total: -71.60 -1.92 -73.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886885438.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.475 kcal (2) G-P(sol) polarization free energy of solvation -71.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds