Wall clock time and date at job start Sat Apr 11 2020 05:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 119.99823 * 2 1 4 4 C 1.53119 * 109.52417 * 59.68008 * 3 2 1 5 5 C 1.53045 * 109.27647 * 182.44197 * 4 3 2 6 6 N 1.46838 * 109.52340 * 59.17873 * 5 4 3 7 7 C 1.46899 * 110.99865 * 174.15953 * 6 5 4 8 8 C 1.46848 * 111.20281 * 298.25728 * 6 5 4 9 9 C 1.53041 * 109.52118 * 61.73918 * 8 6 5 10 10 S 1.65596 * 120.00258 * 179.97438 * 2 1 3 11 11 O 1.42101 * 106.40184 * 345.27972 * 10 2 1 12 12 O 1.42095 * 106.40414 * 212.35944 * 10 2 1 13 13 C 1.76205 * 107.21943 * 98.81871 * 10 2 1 14 14 C 1.37628 * 120.13010 * 113.88816 * 13 10 2 15 15 C 1.38608 * 120.25179 * 180.30053 * 14 13 10 16 16 C 1.38666 * 120.49776 * 359.44254 * 15 14 13 17 17 C 1.37590 * 120.24758 * 0.56201 * 16 15 14 18 18 C 1.40698 * 120.12256 * 293.91640 * 13 10 2 19 19 C 1.41392 * 120.24838 * 359.95035 * 18 13 10 20 20 H 1.07994 * 120.00533 * 322.57005 * 19 18 13 21 21 C 1.39956 * 119.99918 * 142.56835 * 19 18 13 22 22 N 1.30821 * 119.99616 * 350.57872 * 21 19 18 23 23 Si 1.86795 * 120.00003 * 170.57863 * 21 19 18 24 24 H 1.48496 * 109.47199 * 89.99801 * 23 21 19 25 25 H 1.48500 * 109.47311 * 209.99917 * 23 21 19 26 26 H 1.48505 * 109.47027 * 330.00141 * 23 21 19 27 27 H 1.08992 * 109.47448 * 271.22209 * 1 2 3 28 28 H 1.09002 * 109.47376 * 31.22723 * 1 2 3 29 29 H 1.09010 * 109.47028 * 151.22268 * 1 2 3 30 30 H 1.08998 * 109.52435 * 179.87284 * 3 2 1 31 31 H 1.08998 * 109.50223 * 302.37821 * 4 3 2 32 32 H 1.08998 * 109.50359 * 62.49874 * 4 3 2 33 33 H 1.09005 * 109.45896 * 299.16032 * 5 4 3 34 34 H 1.09003 * 109.45740 * 179.19641 * 5 4 3 35 35 H 1.09006 * 109.47023 * 184.21113 * 7 6 5 36 36 H 1.09000 * 109.47459 * 304.20794 * 7 6 5 37 37 H 1.08997 * 109.47415 * 64.20991 * 7 6 5 38 38 H 1.09002 * 109.46150 * 301.72851 * 8 6 5 39 39 H 1.08996 * 109.45591 * 181.75493 * 8 6 5 40 40 H 1.09002 * 109.49865 * 180.88332 * 9 8 6 41 41 H 1.08998 * 109.50249 * 60.77162 * 9 8 6 42 42 H 1.08008 * 119.87561 * 0.02582 * 14 13 10 43 43 H 1.07999 * 119.75286 * 179.70657 * 15 14 13 44 44 H 1.08003 * 119.87288 * 180.29862 * 16 15 14 45 45 H 1.08002 * 120.13031 * 179.74436 * 17 16 15 46 46 H 0.96996 * 119.99286 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 1.8224 2.0762 1.2458 5 6 2.5436 3.4255 1.2093 6 7 2.1568 4.1561 -0.0042 7 6 2.7216 5.5122 -0.0048 8 6 2.5494 3.4220 -1.2139 9 6 1.8284 2.0726 -1.2499 10 16 2.2930 -1.4341 0.0006 11 8 1.3519 -2.4407 0.3475 12 8 3.4908 -1.2055 0.7301 13 6 2.7773 -1.7575 -1.6624 14 6 4.1099 -1.7561 -2.0066 15 6 4.4933 -2.0040 -3.3153 16 6 3.5422 -2.2674 -4.2894 17 6 2.2044 -2.2739 -3.9681 18 6 1.8031 -2.0177 -2.6436 19 6 0.4312 -2.0222 -2.3016 20 1 0.1131 -2.4219 -1.3501 21 6 -0.5147 -1.5088 -3.1962 22 7 -0.1221 -0.8601 -4.2623 23 14 -2.3378 -1.7497 -2.8681 24 1 -2.8500 -0.6131 -2.0613 25 1 -3.0694 -1.8099 -4.1589 26 1 -2.5433 -3.0178 -2.1230 27 1 -0.3634 0.0219 1.0273 28 1 -0.3634 0.8788 -0.5328 29 1 -0.3633 -0.9008 -0.4948 30 1 3.2693 1.0706 0.0023 31 1 0.7449 2.2399 1.2625 32 1 2.1216 1.5275 2.1388 33 1 3.6212 3.2613 1.2066 34 1 2.2675 4.0087 2.0879 35 1 2.3592 6.0564 -0.8770 36 1 2.4152 6.0338 0.9019 37 1 3.8094 5.4528 -0.0398 38 1 3.6270 3.2579 -1.2054 39 1 2.2775 4.0028 -2.0953 40 1 2.1321 1.5214 -2.1399 41 1 0.7510 2.2362 -1.2724 42 1 4.8595 -1.5566 -1.2550 43 1 5.5410 -1.9963 -3.5775 44 1 3.8526 -2.4641 -5.3050 45 1 1.4650 -2.4752 -4.7291 46 1 -0.7777 -0.5046 -4.8825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619571636.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:29 Heat of formation + Delta-G solvation = -68.323067 kcal Electronic energy + Delta-G solvation = -29479.757252 eV Core-core repulsion = 25688.063538 eV Total energy + Delta-G solvation = -3791.693714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.22549 -39.39157 -38.14799 -37.01865 -36.68795 -35.57517 -32.67327 -31.99941 -31.79179 -31.39826 -28.11341 -27.18950 -26.30218 -24.10289 -23.52554 -23.17266 -22.92372 -20.55523 -19.80690 -19.39870 -18.69114 -17.73348 -17.36229 -17.12009 -16.39428 -16.10780 -16.00101 -15.65765 -15.42041 -15.16744 -15.01637 -14.85425 -14.44967 -14.39522 -14.08690 -13.83122 -13.60832 -13.32413 -13.29062 -13.11514 -12.99740 -12.98157 -12.88733 -12.82852 -12.55875 -12.48065 -12.27040 -12.17303 -12.09590 -11.99681 -11.65284 -11.54852 -11.31545 -11.13417 -10.98714 -9.89423 -9.69194 -9.34799 -9.26160 -8.73662 -6.58663 -0.20152 0.52228 0.96804 1.40324 1.46613 1.52625 2.18888 2.23231 2.66101 2.98495 3.02211 3.44427 3.65526 3.75783 3.90381 4.04327 4.18931 4.22343 4.30152 4.39045 4.47284 4.49683 4.57984 4.63194 4.69262 4.73734 4.76180 4.79234 4.92001 4.93566 4.98089 5.05329 5.06888 5.09933 5.18042 5.24317 5.28630 5.31729 5.51572 5.53676 5.67086 5.83831 5.90192 5.97267 6.12046 6.15350 6.18257 6.52438 6.76847 6.82593 8.25387 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010441 B = 0.005644 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.997190 B = 4960.178731 C = 5591.334058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.982 5.982 3 C 0.152 3.848 4 C -0.119 4.119 5 C 0.060 3.940 6 N -0.552 5.552 7 C 0.026 3.974 8 C 0.064 3.936 9 C -0.117 4.117 10 S 2.714 3.286 11 O -0.998 6.998 12 O -1.008 7.008 13 C -0.786 4.786 14 C -0.021 4.021 15 C -0.242 4.242 16 C -0.076 4.076 17 C -0.177 4.177 18 C 0.178 3.822 19 C -0.506 4.506 20 H 0.105 0.895 21 C 0.060 3.940 22 N -0.806 5.806 23 Si 0.949 3.051 24 H -0.242 1.242 25 H -0.265 1.265 26 H -0.262 1.262 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.026 0.974 38 H 0.032 0.968 39 H 0.084 0.916 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.119 0.881 43 H 0.128 0.872 44 H 0.124 0.876 45 H 0.104 0.896 46 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.701 11.043 4.532 11.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.818 5.818 3 C 0.046 3.954 4 C -0.158 4.158 5 C -0.068 4.068 6 N -0.277 5.277 7 C -0.122 4.122 8 C -0.064 4.064 9 C -0.157 4.157 10 S 2.812 3.188 11 O -0.988 6.988 12 O -0.999 6.999 13 C -0.880 4.880 14 C -0.041 4.041 15 C -0.262 4.262 16 C -0.094 4.094 17 C -0.197 4.197 18 C 0.174 3.826 19 C -0.535 4.535 20 H 0.123 0.877 21 C -0.159 4.159 22 N -0.430 5.430 23 Si 0.769 3.231 24 H -0.166 1.166 25 H -0.190 1.190 26 H -0.186 1.186 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.045 0.955 38 H 0.051 0.949 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.137 0.863 43 H 0.146 0.854 44 H 0.141 0.859 45 H 0.122 0.878 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.246 10.701 5.092 11.853 hybrid contribution 0.329 -0.414 -1.208 1.318 sum 0.575 10.287 3.884 11.011 Atomic orbital electron populations 1.21782 0.77930 1.04396 1.01908 1.57109 1.15353 1.19865 1.89519 1.20941 0.94980 0.82969 0.96507 1.21919 1.02402 0.94893 0.96608 1.22095 0.97326 0.94002 0.93393 1.61953 1.60307 1.03507 1.01966 1.22398 0.97241 0.88883 1.03672 1.22000 0.97046 0.93866 0.93538 1.21827 1.01855 0.95004 0.96989 1.00586 0.71675 0.72467 0.74028 1.93424 1.63301 1.57804 1.84302 1.93406 1.48480 1.86124 1.71844 1.30343 1.01595 1.31994 1.24033 1.20578 0.93518 0.93226 0.96798 1.20907 0.99088 1.13047 0.93179 1.21250 0.93300 0.96102 0.98761 1.21435 0.95022 1.05823 0.97395 1.17276 0.92144 0.82326 0.90866 1.20379 0.91288 1.36552 1.05248 0.87700 1.26455 1.04872 0.91584 0.92978 1.69791 1.38829 1.24222 1.10119 0.85682 0.76887 0.80952 0.79589 1.16589 1.18965 1.18631 0.91699 0.90408 0.90641 0.90710 0.89941 0.90868 0.94825 0.88361 0.90842 0.90029 0.95505 0.94940 0.89803 0.93042 0.90757 0.86286 0.85406 0.85856 0.87750 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.95 8.95 127.77 1.14 4.10 16 2 N -0.98 -37.09 3.06 -516.10 -1.58 -38.67 16 3 C 0.15 4.98 2.55 45.07 0.11 5.09 16 4 C -0.12 -3.11 5.41 30.65 0.17 -2.94 16 5 C 0.06 1.32 5.46 86.33 0.47 1.79 16 6 N -0.55 -12.51 4.91 -922.57 -4.53 -17.04 16 7 C 0.03 0.44 9.59 127.69 1.22 1.66 16 8 C 0.06 1.65 5.46 86.33 0.47 2.12 16 9 C -0.12 -3.71 5.40 30.65 0.17 -3.55 16 10 S 2.71 122.17 5.03 -56.49 -0.28 121.89 16 11 O -1.00 -49.45 14.58 -128.00 -1.87 -51.31 16 12 O -1.01 -46.35 15.84 -128.00 -2.03 -48.38 16 13 C -0.79 -37.92 5.97 22.73 0.14 -37.79 16 14 C -0.02 -0.97 9.53 22.21 0.21 -0.75 16 15 C -0.24 -10.13 10.05 22.46 0.23 -9.90 16 16 C -0.08 -3.27 10.02 22.22 0.22 -3.04 16 17 C -0.18 -8.69 8.62 22.73 0.20 -8.50 16 18 C 0.18 9.07 5.43 -21.29 -0.12 8.95 16 19 C -0.51 -25.10 6.08 23.46 0.14 -24.96 16 20 H 0.11 5.36 4.50 -2.91 -0.01 5.34 16 21 C 0.06 2.72 5.20 85.26 0.44 3.17 16 22 N -0.81 -37.54 11.40 21.83 0.25 -37.29 16 23 Si 0.95 35.05 29.15 68.60 2.00 37.05 16 24 H -0.24 -8.19 7.11 99.48 0.71 -7.48 16 25 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 26 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.08 2.47 6.39 -2.39 -0.02 2.46 16 29 H 0.08 2.99 3.94 -2.38 -0.01 2.98 16 30 H 0.07 2.61 7.17 -2.39 -0.02 2.60 16 31 H 0.08 2.08 7.59 -2.39 -0.02 2.06 16 32 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.10 1.72 8.09 -2.39 -0.02 1.70 16 35 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 37 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 2.00 8.12 -2.39 -0.02 1.98 16 40 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.07 2.37 6.58 -2.39 -0.02 2.35 16 42 H 0.12 4.94 7.32 -2.91 -0.02 4.92 16 43 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 44 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 45 H 0.10 5.23 6.87 -2.91 -0.02 5.21 16 46 H 0.29 12.37 8.30 -92.71 -0.77 11.60 16 Total: -1.00 -59.89 365.11 -1.84 -61.72 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: 0.98 Total: 36.56 kcal Atomic # 6 Polarization: -69.76 SS G_CDS: 5.22 Total: -64.54 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -5.86 Total: -92.99 kcal Atomic # 8 Polarization: -95.80 SS G_CDS: -3.89 Total: -99.69 kcal Atomic # 14 Polarization: 35.05 SS G_CDS: 2.00 Total: 37.05 kcal Atomic # 16 Polarization: 122.17 SS G_CDS: -0.28 Total: 121.89 kcal Total: -59.89 -1.84 -61.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619571636.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.599 kcal (2) G-P(sol) polarization free energy of solvation -59.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds