Wall clock time and date at job start Sat Apr 11 2020 05:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46506 * 119.99594 * 2 1 4 4 S 1.65599 * 120.00377 * 180.02562 * 2 1 3 5 5 O 1.42104 * 106.39887 * 336.46135 * 4 2 1 6 6 O 1.42100 * 106.40397 * 203.54178 * 4 2 1 7 7 C 1.76197 * 107.21787 * 90.00060 * 4 2 1 8 8 C 1.38309 * 120.05935 * 90.00307 * 7 4 2 9 9 C 1.37910 * 120.26409 * 180.38450 * 8 7 4 10 10 C 1.39402 * 120.19860 * 359.47708 * 9 8 7 11 11 C 1.38969 * 119.08942 * 0.30282 * 10 9 8 12 12 C 1.37915 * 120.48166 * 0.03268 * 11 10 9 13 13 C 1.51573 * 107.95062 * 180.22958 * 11 10 9 14 14 C 1.54600 * 102.83093 * 16.02043 * 13 11 10 15 15 N 1.40032 * 129.94629 * 179.74941 * 10 9 8 16 16 C 1.46901 * 111.00439 * 284.02135 * 15 10 9 17 17 C 1.53002 * 109.47193 * 170.14033 * 16 15 10 18 18 C 1.53001 * 109.46747 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.46885 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00194 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00053 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99884 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00252 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46766 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47020 * 119.99444 * 23 21 19 26 26 H 1.48499 * 109.47044 * 239.99885 * 23 21 19 27 27 H 1.08998 * 109.47046 * 269.99729 * 1 2 3 28 28 H 1.08996 * 109.47005 * 30.00122 * 1 2 3 29 29 H 1.09002 * 109.46700 * 149.99652 * 1 2 3 30 30 H 1.09000 * 109.47054 * 239.99854 * 3 2 1 31 31 H 1.08998 * 109.47221 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.46698 * 119.99761 * 3 2 1 33 33 H 1.08002 * 119.86327 * 0.10031 * 8 7 4 34 34 H 1.07996 * 119.89803 * 179.76117 * 9 8 7 35 35 H 1.07997 * 119.96040 * 179.83865 * 12 11 10 36 36 H 1.08997 * 110.74214 * 134.35846 * 13 11 10 37 37 H 1.09003 * 110.74241 * 257.68554 * 13 11 10 38 38 H 1.09003 * 110.77889 * 92.72489 * 14 13 11 39 39 H 1.09002 * 110.78272 * 216.16463 * 14 13 11 40 40 H 1.09000 * 109.46623 * 290.14465 * 16 15 10 41 41 H 1.08998 * 109.46879 * 50.13658 * 16 15 10 42 42 H 1.08999 * 109.46954 * 299.99686 * 17 16 15 43 43 H 1.09000 * 109.47001 * 60.00082 * 17 16 15 44 44 H 1.09005 * 109.47473 * 299.99681 * 18 17 16 45 45 H 1.09000 * 109.47357 * 60.00235 * 18 17 16 46 46 H 0.97007 * 119.99995 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2931 -1.4341 -0.0006 5 8 1.4114 -2.4067 0.5434 6 8 3.5760 -1.1569 0.5440 7 6 2.5539 -1.8850 -1.6839 8 6 3.6932 -1.4637 -2.3454 9 6 3.8978 -1.8075 -3.6652 10 6 2.9624 -2.5916 -4.3386 11 6 1.8232 -3.0135 -3.6637 12 6 1.6200 -2.6611 -2.3459 13 6 0.9934 -3.8447 -4.6218 14 6 1.9973 -4.1708 -5.7514 15 7 2.9603 -3.0517 -5.6612 16 6 2.6034 -1.9737 -6.5931 17 6 2.8484 -2.4396 -8.0298 18 6 2.4773 -1.3165 -9.0003 19 6 2.7180 -1.7756 -10.4153 20 1 3.0980 -2.7688 -10.6036 21 6 2.4540 -0.9272 -11.4697 22 7 1.9917 0.2825 -11.2404 23 14 2.7529 -1.4960 -13.2237 24 1 3.2717 -2.8874 -13.2112 25 1 1.4778 -1.4494 -13.9833 26 1 3.7476 -0.6031 -13.8708 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 2.8241 1.3266 -0.8900 31 1 1.4891 2.0973 0.0005 32 1 2.8240 1.3266 0.8900 33 1 4.4232 -0.8592 -1.8276 34 1 4.7876 -1.4722 -4.1771 35 1 0.7305 -2.9915 -1.8302 36 1 0.6455 -4.7579 -4.1391 37 1 0.1536 -3.2663 -5.0069 38 1 2.4931 -5.1235 -5.5650 39 1 1.5000 -4.1757 -6.7214 40 1 1.5510 -1.7190 -6.4681 41 1 3.2166 -1.0966 -6.3860 42 1 3.9008 -2.6942 -8.1547 43 1 2.2352 -3.3167 -8.2368 44 1 1.4249 -1.0614 -8.8756 45 1 3.0908 -0.4397 -8.7931 46 1 1.8056 0.8792 -11.9822 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726596533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:55 Heat of formation + Delta-G solvation = -58.520193 kcal Electronic energy + Delta-G solvation = -26922.200240 eV Core-core repulsion = 23130.931610 eV Total energy + Delta-G solvation = -3791.268630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.97654 -38.44263 -38.31387 -37.11586 -36.95471 -35.98337 -34.14888 -32.90424 -30.87485 -30.07591 -28.95298 -28.11235 -25.62366 -25.10650 -24.49228 -22.92623 -22.57538 -21.32837 -19.98404 -18.73451 -18.55438 -18.32942 -17.65676 -17.56041 -16.85411 -16.50658 -16.45749 -15.78773 -15.52064 -15.37711 -15.11318 -14.90460 -14.45220 -14.32818 -14.26651 -14.12883 -13.88723 -13.64215 -13.49533 -13.41140 -13.34843 -13.26840 -13.17577 -12.77175 -12.65124 -12.56129 -12.51557 -12.36764 -12.30483 -12.09797 -11.99251 -11.56721 -11.47840 -11.24970 -10.71630 -10.56963 -10.07054 -10.01171 -9.19987 -8.21776 -6.32364 -0.73137 -0.31332 0.19499 1.39462 1.40338 1.53202 1.86487 2.27318 2.40101 2.57585 2.68773 3.11990 3.12924 3.48661 3.67741 3.84331 3.86714 3.93332 4.02302 4.13075 4.19893 4.28550 4.36331 4.50782 4.55389 4.58787 4.63957 4.69648 4.75296 4.82766 4.86402 4.89230 4.94909 4.96260 4.99656 5.00673 5.03680 5.05021 5.17388 5.26166 5.48965 5.53991 5.54472 5.68512 5.80357 5.83544 6.06571 6.23794 6.84388 7.37130 8.90234 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020760 B = 0.002239 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.417193 B =12501.867075 C =12986.469642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -1.004 6.004 3 C 0.078 3.922 4 S 2.716 3.284 5 O -0.980 6.980 6 O -0.979 6.979 7 C -0.698 4.698 8 C -0.006 4.006 9 C -0.146 4.146 10 C 0.136 3.864 11 C -0.170 4.170 12 C 0.004 3.996 13 C -0.104 4.104 14 C 0.040 3.960 15 N -0.505 5.505 16 C 0.075 3.925 17 C -0.089 4.089 18 C 0.027 3.973 19 C -0.541 4.541 20 H 0.059 0.941 21 C 0.000 4.000 22 N -0.933 5.933 23 Si 0.963 3.037 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.279 1.279 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.161 0.839 34 H 0.141 0.859 35 H 0.153 0.847 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.059 0.941 44 H -0.006 1.006 45 H -0.009 1.009 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.535 -1.697 24.135 24.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.845 5.845 3 C -0.067 4.067 4 S 2.807 3.193 5 O -0.970 6.970 6 O -0.970 6.970 7 C -0.786 4.786 8 C -0.026 4.026 9 C -0.167 4.167 10 C 0.038 3.962 11 C -0.174 4.174 12 C -0.015 4.015 13 C -0.141 4.141 14 C -0.086 4.086 15 N -0.221 5.221 16 C -0.050 4.050 17 C -0.127 4.127 18 C -0.011 4.011 19 C -0.579 4.579 20 H 0.078 0.922 21 C -0.198 4.198 22 N -0.573 5.573 23 Si 0.788 3.212 24 H -0.187 1.187 25 H -0.203 1.203 26 H -0.205 1.205 27 H 0.087 0.913 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.125 0.875 32 H 0.086 0.914 33 H 0.178 0.822 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.130 0.870 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.012 0.988 45 H 0.010 0.990 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.831 -2.161 24.549 24.806 hybrid contribution -0.475 0.352 -1.781 1.877 sum -3.305 -1.809 22.767 23.077 Atomic orbital electron populations 1.21817 0.76658 1.04578 1.03347 1.57202 1.16211 1.21307 1.89751 1.21835 0.97561 0.84742 1.02559 1.01158 0.72367 0.72401 0.73412 1.93537 1.66565 1.59844 1.77073 1.93533 1.41482 1.84919 1.77038 1.30887 1.05148 1.15921 1.26667 1.20882 0.94451 0.94231 0.93024 1.20849 0.99902 1.01071 0.94863 1.20243 0.93237 0.92439 0.90317 1.21381 0.96387 1.03549 0.96083 1.20262 0.97394 0.91750 0.92141 1.21742 0.97876 1.00420 0.94105 1.23401 0.91290 0.94023 0.99910 1.60131 1.49977 1.09519 1.02512 1.22139 0.98981 0.92194 0.91690 1.21441 1.00890 0.98677 0.91680 1.18951 0.94831 0.93689 0.93589 1.21688 1.43303 1.00222 0.92657 0.92226 1.25955 0.94853 0.94964 1.03992 1.70094 1.46089 1.08110 1.33004 0.85420 0.77950 0.78741 0.79076 1.18653 1.20302 1.20473 0.91325 0.88547 0.90919 0.91569 0.87498 0.91365 0.82190 0.84127 0.82950 0.86988 0.89256 0.88150 0.88720 0.94077 0.91287 0.92850 0.92236 0.98775 0.99011 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.26 127.77 1.31 2.15 16 2 N -1.00 -14.43 3.58 -562.68 -2.02 -16.44 16 3 C 0.08 0.82 10.30 127.77 1.32 2.14 16 4 S 2.72 55.45 5.65 -56.49 -0.32 55.13 16 5 O -0.98 -24.19 16.36 -128.00 -2.09 -26.28 16 6 O -0.98 -24.34 16.45 -128.00 -2.11 -26.45 16 7 C -0.70 -15.05 5.98 22.30 0.13 -14.92 16 8 C -0.01 -0.13 9.50 22.21 0.21 0.08 16 9 C -0.15 -3.63 10.07 22.47 0.23 -3.41 16 10 C 0.14 3.70 5.54 38.29 0.21 3.91 16 11 C -0.17 -4.10 6.23 -19.49 -0.12 -4.22 16 12 C 0.00 0.09 9.51 22.21 0.21 0.31 16 13 C -0.10 -2.11 6.93 30.67 0.21 -1.90 16 14 C 0.04 0.95 6.72 86.65 0.58 1.53 16 15 N -0.51 -14.70 5.04 -688.63 -3.47 -18.17 16 16 C 0.07 2.49 4.75 86.30 0.41 2.90 16 17 C -0.09 -3.53 5.19 30.59 0.16 -3.37 16 18 C 0.03 1.38 4.97 29.85 0.15 1.53 16 19 C -0.54 -30.24 9.11 25.60 0.23 -30.01 16 20 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 21 C 0.00 0.01 5.46 84.65 0.46 0.47 16 22 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16 23 Si 0.96 43.64 29.54 68.60 2.03 45.66 16 24 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 26 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.10 0.60 7.92 -2.39 -0.02 0.58 16 29 H 0.07 0.75 7.79 -2.39 -0.02 0.73 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.11 0.60 7.79 -2.39 -0.02 0.58 16 32 H 0.07 0.74 8.01 -2.39 -0.02 0.72 16 33 H 0.16 2.78 7.61 -2.91 -0.02 2.75 16 34 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 35 H 0.15 2.69 7.62 -2.91 -0.02 2.67 16 36 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.09 2.30 6.26 -2.39 -0.01 2.28 16 40 H 0.04 1.36 8.03 -2.39 -0.02 1.34 16 41 H 0.07 2.36 8.06 -2.39 -0.02 2.34 16 42 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.06 2.24 6.59 -2.39 -0.02 2.22 16 44 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 45 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 46 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 Total: -1.00 -72.98 386.66 -1.03 -74.01 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.96 Total: 10.93 kcal Atomic # 6 Polarization: -48.52 SS G_CDS: 5.71 Total: -42.81 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -5.20 Total: -90.20 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -4.20 Total: -52.73 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 55.45 SS G_CDS: -0.32 Total: 55.13 kcal Total: -72.98 -1.03 -74.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726596533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.494 kcal (2) G-P(sol) polarization free energy of solvation -72.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds