Wall clock time and date at job start Sat Apr 11 2020 05:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46895 * 111.00330 * 2 1 4 4 C 1.46900 * 110.99768 * 123.95592 * 2 1 3 5 5 C 1.53000 * 109.47604 * 66.04267 * 4 2 1 6 6 O 1.42893 * 109.46940 * 64.99918 * 5 4 2 7 7 C 1.35975 * 116.99954 * 180.02562 * 6 5 4 8 8 C 1.38718 * 119.98225 * 359.72351 * 7 6 5 9 9 C 1.38097 * 120.01173 * 179.72330 * 8 7 6 10 10 C 1.38841 * 119.98569 * 0.57541 * 9 8 7 11 11 N 1.40104 * 120.01794 * 179.67507 * 10 9 8 12 12 C 1.46500 * 120.00024 * 112.85409 * 11 10 9 13 13 C 1.34781 * 120.00426 * 292.85754 * 11 10 9 14 14 O 1.21297 * 119.99343 * 5.27428 * 13 11 10 15 15 C 1.50699 * 120.00050 * 185.27389 * 13 11 10 16 16 S 1.80997 * 109.46907 * 180.02562 * 15 13 11 17 17 C 1.76202 * 100.00046 * 179.97438 * 16 15 13 18 18 H 1.07998 * 119.99607 * 0.02562 * 17 16 15 19 19 C 1.38802 * 120.00048 * 179.97438 * 17 16 15 20 20 N 1.31628 * 119.99772 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00037 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47292 * 90.00009 * 21 19 17 23 23 H 1.48500 * 109.47096 * 210.00290 * 21 19 17 24 24 H 1.48507 * 109.46990 * 329.99800 * 21 19 17 25 25 C 1.38850 * 119.96777 * 359.70071 * 10 9 8 26 26 C 1.38083 * 119.98921 * 0.02562 * 25 10 9 27 27 H 1.09007 * 109.46996 * 296.05015 * 1 2 3 28 28 H 1.09003 * 109.46872 * 56.04494 * 1 2 3 29 29 H 1.08996 * 109.47773 * 176.04546 * 1 2 3 30 30 H 1.09005 * 109.47074 * 183.95104 * 3 2 1 31 31 H 1.08999 * 109.47076 * 303.94950 * 3 2 1 32 32 H 1.08999 * 109.47097 * 63.95403 * 3 2 1 33 33 H 1.09002 * 109.47055 * 306.04314 * 4 2 1 34 34 H 1.09000 * 109.47158 * 186.04757 * 4 2 1 35 35 H 1.09008 * 109.46864 * 305.00002 * 5 4 2 36 36 H 1.09000 * 109.47271 * 185.00106 * 5 4 2 37 37 H 1.08002 * 119.99789 * 359.97438 * 8 7 6 38 38 H 1.07998 * 120.00742 * 180.27259 * 9 8 7 39 39 H 1.09006 * 109.47374 * 90.00076 * 12 11 10 40 40 H 1.08992 * 109.47733 * 210.00471 * 12 11 10 41 41 H 1.08997 * 109.47151 * 330.00703 * 12 11 10 42 42 H 1.09001 * 109.47187 * 300.00130 * 15 13 11 43 43 H 1.08995 * 109.46903 * 60.00226 * 15 13 11 44 44 H 0.97000 * 119.99982 * 179.97438 * 20 19 17 45 45 H 1.08002 * 120.00426 * 179.97438 * 25 10 9 46 46 H 1.08003 * 119.99634 * 180.02562 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6313 -2.2427 0.9704 6 8 2.2954 -2.7696 -0.1799 7 6 2.0771 -4.0794 -0.4727 8 6 1.2453 -4.8410 0.3350 9 6 1.0186 -6.1698 0.0349 10 6 1.6328 -6.7465 -1.0687 11 7 1.4087 -8.0963 -1.3698 12 6 0.6754 -8.4640 -2.5836 13 6 1.8675 -9.0566 -0.5429 14 8 2.3899 -8.7524 0.5088 15 6 1.7316 -10.5080 -0.9248 16 16 2.4362 -11.5441 0.3814 17 6 2.1498 -13.1408 -0.3066 18 1 1.6659 -13.2358 -1.2674 19 6 2.5471 -14.2762 0.3858 20 7 3.1374 -14.1603 1.5566 21 14 2.2442 -15.9689 -0.3438 22 1 3.4112 -16.3675 -1.1710 23 1 2.0544 -16.9534 0.7516 24 1 1.0258 -15.9314 -1.1921 25 6 2.4698 -5.9850 -1.8734 26 6 2.6912 -4.6550 -1.5755 27 1 -0.3633 0.4513 0.9233 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3634 -1.0251 -0.0709 30 1 3.0828 1.3431 -0.0708 31 1 1.5899 1.9162 -0.8525 32 1 1.7044 1.8723 0.9233 33 1 1.5610 -0.3873 2.0628 34 1 3.0796 -0.6612 1.1757 35 1 0.5530 -2.3389 0.8434 36 1 1.9437 -2.7964 1.8558 37 1 0.7716 -4.3937 1.1964 38 1 0.3675 -6.7615 0.6613 39 1 1.3768 -8.5849 -3.4093 40 1 0.1447 -9.4014 -2.4177 41 1 -0.0407 -7.6793 -2.8273 42 1 0.6772 -10.7528 -1.0531 43 1 2.2629 -10.6891 -1.8591 44 1 3.4148 -14.9538 2.0406 45 1 2.9482 -6.4332 -2.7317 46 1 3.3419 -4.0625 -2.2015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732003605.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:22:09 Heat of formation + Delta-G solvation = -49.521102 kcal Electronic energy + Delta-G solvation = -25804.667190 eV Core-core repulsion = 22013.788790 eV Total energy + Delta-G solvation = -3790.878400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.63435 -40.64806 -38.84449 -37.80593 -36.15631 -34.58143 -32.30445 -31.78652 -30.98073 -29.30161 -28.49573 -27.70406 -27.40453 -25.57535 -23.89004 -23.42802 -21.77885 -20.85400 -19.62693 -19.25684 -18.34501 -17.61031 -17.38109 -17.27495 -16.87536 -16.41125 -16.14094 -16.05549 -15.72178 -15.65345 -15.36238 -14.85969 -14.57372 -14.46845 -14.37069 -14.06075 -13.71446 -13.60434 -13.53644 -13.29739 -13.23856 -13.17303 -13.07564 -12.88269 -12.66301 -12.62350 -12.55191 -12.33772 -11.84647 -11.74287 -11.61632 -11.13740 -10.99842 -10.27216 -10.09793 -10.01794 -9.29083 -8.96642 -8.67627 -8.34174 -6.12869 0.27619 0.32951 1.24697 1.43391 1.45428 1.51422 1.56918 2.05178 2.24895 2.27699 2.68655 2.98410 3.00153 3.26621 3.73399 3.79046 3.86014 3.95936 4.06291 4.16420 4.20077 4.24838 4.27435 4.37180 4.39275 4.45999 4.47092 4.50153 4.60204 4.64331 4.68528 4.74434 4.81512 4.88675 4.90492 5.01146 5.03332 5.03664 5.29462 5.42413 5.45339 5.51754 5.87879 6.03566 6.07524 6.17324 6.20740 6.46722 7.07004 7.11428 8.75088 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.034771 B = 0.001793 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.077480 B =15609.058988 C =15982.373727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.562 5.562 3 C 0.026 3.974 4 C 0.057 3.943 5 C 0.054 3.946 6 O -0.307 6.307 7 C 0.127 3.873 8 C -0.200 4.200 9 C -0.079 4.079 10 C 0.084 3.916 11 N -0.569 5.569 12 C 0.072 3.928 13 C 0.532 3.468 14 O -0.554 6.554 15 C -0.121 4.121 16 S -0.152 6.152 17 C -0.545 4.545 18 H 0.085 0.915 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.257 1.257 25 C -0.079 4.079 26 C -0.145 4.145 27 H 0.035 0.965 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.146 0.854 38 H 0.113 0.887 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.271 0.729 45 H 0.148 0.852 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.518 28.941 -8.273 31.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.287 5.287 3 C -0.122 4.122 4 C -0.071 4.071 5 C -0.021 4.021 6 O -0.221 6.221 7 C 0.081 3.919 8 C -0.219 4.219 9 C -0.099 4.099 10 C -0.007 4.007 11 N -0.299 5.299 12 C -0.068 4.068 13 C 0.321 3.679 14 O -0.431 6.431 15 C -0.272 4.272 16 S 0.075 5.925 17 C -0.693 4.693 18 H 0.103 0.897 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.181 1.181 25 C -0.098 4.098 26 C -0.164 4.164 27 H 0.053 0.947 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.164 0.836 38 H 0.131 0.869 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.080 0.920 45 H 0.165 0.835 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.421 29.216 -7.126 30.750 hybrid contribution -1.020 -1.218 -0.190 1.600 sum -7.440 27.997 -7.317 29.879 Atomic orbital electron populations 1.22473 0.86810 1.02319 1.01225 1.61929 1.08664 1.14830 1.43282 1.22397 1.00963 0.87770 1.01094 1.22205 1.01781 0.90508 0.92603 1.23100 0.97447 0.94608 0.86920 1.86164 1.67580 1.21324 1.47005 1.19145 0.94626 0.83775 0.94353 1.21231 1.03764 0.94379 1.02565 1.21094 0.98016 0.94633 0.96178 1.17688 1.00814 0.83814 0.98361 1.45367 1.56115 1.02906 1.25523 1.22184 0.96835 1.02974 0.84828 1.20354 0.77022 0.87297 0.83234 1.90699 1.44179 1.83343 1.24845 1.23367 1.06159 0.93330 1.04348 1.85625 1.78772 1.00796 1.27322 1.23203 1.45916 0.91579 1.08618 0.89723 1.26136 0.93928 1.04041 0.95020 1.70188 1.38772 1.31489 1.14367 0.84940 0.79251 0.75786 0.77921 1.19325 1.20373 1.18053 1.21168 0.95297 0.93275 1.00098 1.20476 1.03383 0.94659 0.97876 0.94686 0.90813 0.91711 0.91212 0.90809 0.94886 0.90797 0.89626 0.91077 0.90734 0.83597 0.86857 0.90293 0.89761 0.88800 0.86938 0.87060 0.92013 0.83475 0.83124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.33 127.69 1.19 1.41 16 2 N -0.56 -7.69 4.97 -948.85 -4.71 -12.40 16 3 C 0.03 0.26 9.57 127.69 1.22 1.48 16 4 C 0.06 0.69 5.34 86.30 0.46 1.15 16 5 C 0.05 0.81 4.79 71.98 0.35 1.15 16 6 O -0.31 -6.52 10.08 -93.27 -0.94 -7.46 16 7 C 0.13 2.95 6.69 22.50 0.15 3.10 16 8 C -0.20 -4.76 9.03 22.35 0.20 -4.56 16 9 C -0.08 -2.27 9.30 22.38 0.21 -2.06 16 10 C 0.08 2.39 4.83 38.11 0.18 2.57 16 11 N -0.57 -16.71 2.93 -654.43 -1.92 -18.62 16 12 C 0.07 1.39 10.10 127.77 1.29 2.69 16 13 C 0.53 20.95 7.57 87.66 0.66 21.62 16 14 O -0.55 -27.01 15.42 -3.08 -0.05 -27.06 16 15 C -0.12 -4.89 4.83 71.24 0.34 -4.54 16 16 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 17 C -0.55 -31.12 9.50 67.95 0.65 -30.47 16 18 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 19 C 0.01 0.77 5.49 84.86 0.47 1.23 16 20 N -0.91 -56.20 13.22 21.65 0.29 -55.92 16 21 Si 1.00 43.48 29.55 68.60 2.03 45.51 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 24 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 25 C -0.08 -1.90 9.85 22.38 0.22 -1.68 16 26 C -0.14 -3.26 9.98 22.35 0.22 -3.04 16 27 H 0.03 0.31 8.14 -2.38 -0.02 0.29 16 28 H 0.07 0.74 8.12 -2.39 -0.02 0.72 16 29 H 0.06 0.77 6.37 -2.39 -0.02 0.76 16 30 H 0.07 0.70 8.12 -2.38 -0.02 0.68 16 31 H 0.07 0.66 8.12 -2.39 -0.02 0.65 16 32 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 34 H 0.09 1.08 8.06 -2.39 -0.02 1.06 16 35 H 0.07 0.95 5.86 -2.38 -0.01 0.93 16 36 H 0.07 1.01 7.65 -2.39 -0.02 0.99 16 37 H 0.15 2.76 6.29 -2.91 -0.02 2.74 16 38 H 0.11 3.43 8.06 -2.91 -0.02 3.40 16 39 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.08 1.55 6.48 -2.39 -0.02 1.54 16 41 H 0.09 1.41 8.05 -2.39 -0.02 1.39 16 42 H 0.11 4.04 7.24 -2.39 -0.02 4.02 16 43 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 44 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 45 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 46 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -79.15 395.63 2.32 -76.84 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.96 Total: 18.76 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 7.82 Total: -9.94 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -6.34 Total: -86.94 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -0.99 Total: -34.51 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -79.15 2.32 -76.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732003605.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.314 kcal (2) G-P(sol) polarization free energy of solvation -79.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds